mRNA_Ecto-sp13_S_contig12731.2263.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12731.2263.1
Unique NamemRNA_Ecto-sp13_S_contig12731.2263.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12731.2263.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE)

HSP 1 Score: 304 bits (778), Expect = 5.590e-98
Identity = 162/181 (89.50%), Postives = 163/181 (90.06%), Query Frame = 1
Query:    4 SLGCTPPPAS--PRACRTYVSRPLTAVTGPPSREVFDPRVGLATAHLDSLGLMNGGGIGVGSSGSGVAAGRVLVAEAKLSGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCVQVAAEGG 540
            S G  P  AS  P A R   S     VTGPPSREVFDPRVGLATAHLD+LGLMNGGGIGVGSSGSG AAGRVLVAEAKLSGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCVQVAAEGG
Sbjct:   58 SAGSAPASASLAPAAARPGASTGGN-VTGPPSREVFDPRVGLATAHLDALGLMNGGGIGVGSSGSGFAAGRVLVAEAKLSGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCVQVAAEGG 237          
BLAST of mRNA_Ecto-sp13_S_contig12731.2263.1 vs. uniprot
Match: A0A835YSR1_9STRA (WD40-repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR1_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.170e-28
Identity = 69/151 (45.70%), Postives = 79/151 (52.32%), Query Frame = 1
Query:   85 PPSREVFDPRVGLATAHLDSLGLMNGGGIGVGSSGSGVAAGRVLVAEAKLSGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCVQVAAEG 537
            PPSR    P     +AH               + G+  A  R L    KL GHTAAVY   FSP  +LVAS GFDRT+RLWEG YP+SQVACL  HRQL+SD                      DTETGQRV N+L LEG++QCV  A  G
Sbjct:   43 PPSRPGHPPSPFKVSAH---------------AHGASAAPDRRLNPAGKLVGHTAAVYAVAFSPCGNLVASGGFDRTVRLWEGGYPHSQVACLAEHRQLVSDXXXXXXXXXXXXXXXXXXXXXXDTETGQRVNNVLRLEGMLQCVSYADGG 178          
BLAST of mRNA_Ecto-sp13_S_contig12731.2263.1 vs. uniprot
Match: D7FIJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ7_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 2.690e-18
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 1
Query:   76 VTGPPSREVFDPRVGLATAHLDSLGLMNGGGIGVGSSGSGVAAGRVLVAEAKL 234
            VTGPPSR+VFDPRVG+ATAHLDSLGLMNGGGI VGS+G  + AGR+LVAEAKL
Sbjct:   83 VTGPPSRKVFDPRVGIATAHLDSLGLMNGGGIRVGSNGIRIPAGRILVAEAKL 135          
BLAST of mRNA_Ecto-sp13_S_contig12731.2263.1 vs. uniprot
Match: A0A1V8SS61_9PEZI (Uncharacterized protein n=4 Tax=Rachicladosporium TaxID=470018 RepID=A0A1V8SS61_9PEZI)

HSP 1 Score: 89.0 bits (219), Expect = 9.760e-18
Identity = 45/136 (33.09%), Postives = 78/136 (57.35%), Query Frame = 1
Query:  130 AHLDSLGLMNGGGIGVGSSGSGVAAGRVLVAEAKLSGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCVQVAAEG 537
            A+ + +  +NGGG      G G A+G +  +  +++GH+A ++ A+FSP  + +ASAG DR + LW  +   +    L GH+  + DL W+ D + + SAS D  +A W+ ETG+R+   +  E ++ C+ V+  G
Sbjct:   23 ANSNEVAKVNGGGSNALIYGGGRASG-LQASVMEMTGHSAEIFAARFSPSGAHIASAGADRDILLWHSSGDCANYGTLVGHKSAVLDLHWSRDSQVIYSASADMHIASWNVETGERIRRHVGHEEVINCIDVSKRG 157          
BLAST of mRNA_Ecto-sp13_S_contig12731.2263.1 vs. uniprot
Match: A0A1V9Z1V2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1V2_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.110e-17
Identity = 49/106 (46.23%), Postives = 66/106 (62.26%), Query Frame = 1
Query:  208 RVLVAEAKLSGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQ--VACLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCV 519
            RVL  +++L GH  AVY  KFSP   L+AS   D  + LW+    ++Q  +A L  H QL+ D+ W+ D RSLLSAS+D TV  WDT+ GQ + N + + GLVQ V
Sbjct:  107 RVLYQKSELRGHGGAVYTTKFSPCGRLLASGSLDCRVLLWDITTKFNQQQLASLASHNQLVIDMSWSNDSRSLLSASYDHTVNLWDTDKGQLL-NSIGVNGLVQTV 211          
BLAST of mRNA_Ecto-sp13_S_contig12731.2263.1 vs. uniprot
Match: T0QW05_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QW05_SAPDV)

HSP 1 Score: 80.5 bits (197), Expect = 1.970e-14
Identity = 45/92 (48.91%), Postives = 57/92 (61.96%), Query Frame = 1
Query:  250 AVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQ--VACLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCV 519
            AVY  KFSP   L+AS   D  + LW+    ++Q  +A L  H QLI D+ W+ D RSLLSAS+D TV  WDT+ GQ V N + + GLVQ V
Sbjct:  134 AVYTTKFSPCGRLLASGSLDCRVLLWDITTKFNQQQLASLTQHNQLIIDISWSNDSRSLLSASYDHTVNLWDTDKGQLV-NSVGVNGLVQTV 224          
BLAST of mRNA_Ecto-sp13_S_contig12731.2263.1 vs. uniprot
Match: A0A1A0HJF3_9ASCO (Uncharacterized protein n=1 Tax=Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993 TaxID=869754 RepID=A0A1A0HJF3_9ASCO)

HSP 1 Score: 72.8 bits (177), Expect = 5.570e-12
Identity = 44/106 (41.51%), Postives = 58/106 (54.72%), Query Frame = 1
Query:  232 LSGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVA----CLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCVQVAAEG 537
            LSGHT AV+  +FS     +ASAG DRT+RLW         A     +EGH++ I+ L W    + +LSAS D TV+ WD ETGQR+      E  V     ++EG
Sbjct:   24 LSGHTGAVFSIEFSADGHNIASAGMDRTIRLWNLPTTADNEAPNYGVIEGHKKAITSLSWILSSK-ILSASADSTVSVWDAETGQRLKTGKGHELTVNDCSTSSEG 128          
BLAST of mRNA_Ecto-sp13_S_contig12731.2263.1 vs. uniprot
Match: A9V9T1_MONBE (Lactoylglutathione lyase n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V9T1_MONBE)

HSP 1 Score: 70.5 bits (171), Expect = 6.520e-11
Identity = 35/84 (41.67%), Postives = 46/84 (54.76%), Query Frame = 1
Query:  229 KLSGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRV 480
            +L GH  AVY   FSP   ++A+AGFDR + +W        +  L+GH   +  L WA     L S S D+TVA WD  TG+RV
Sbjct:   73 RLEGHAEAVYAGTFSPSGHMLATAGFDRNVYVWNTFGNCENIMSLQGHTGAVLGLHWAKLENRLFSCSSDKTVAVWDGNTGERV 156          
BLAST of mRNA_Ecto-sp13_S_contig12731.2263.1 vs. uniprot
Match: A0A512UMM7_9ASCO (Uncharacterized protein n=1 Tax=Metschnikowia sp. JCM 33374 TaxID=2562755 RepID=A0A512UMM7_9ASCO)

HSP 1 Score: 69.3 bits (168), Expect = 9.710e-11
Identity = 38/87 (43.68%), Postives = 53/87 (60.92%), Query Frame = 1
Query:  232 LSGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVA----CLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRV 480
            LSGH+ AV+  KFSP    +ASAG DRT+RLW      ++ +     +EGH+  ++ L W    + +LS S D TV+ WD ETGQR+
Sbjct:   24 LSGHSGAVFSVKFSPDGQHIASAGTDRTIRLWNLPTRANEESPNYGVIEGHKGGLTALSWLSQSK-ILSTSADSTVSIWDAETGQRL 109          
BLAST of mRNA_Ecto-sp13_S_contig12731.2263.1 vs. uniprot
Match: A0A4P6XGR8_9ASCO (Prp8 binding protein n=1 Tax=Metschnikowia aff. pulcherrima TaxID=2163413 RepID=A0A4P6XGR8_9ASCO)

HSP 1 Score: 67.8 bits (164), Expect = 3.600e-10
Identity = 37/87 (42.53%), Postives = 47/87 (54.02%), Query Frame = 1
Query:  232 LSGHTAAVYVAKFSPRDSLVASAGFDRTLRLW----EGAYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRV 480
            LSGH  A    KFSP    +ASAG DRT+RLW    +          +EGH+  ++ L W    + + + S D TVA WD ETGQRV
Sbjct:   33 LSGHEGAALCVKFSPDGQNIASAGLDRTIRLWNLPTDAKDEVPNYGVIEGHKGAVTCLDWLAQSK-IFTGSADSTVAFWDAETGQRV 118          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12731.2263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNQ7_9PHAE5.590e-9889.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YSR1_9STRA1.170e-2845.70WD40-repeat-containing domain protein (Fragment) n... [more]
D7FIJ7_ECTSI2.690e-1883.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1V8SS61_9PEZI9.760e-1833.09Uncharacterized protein n=4 Tax=Rachicladosporium ... [more]
A0A1V9Z1V2_9STRA1.110e-1746.23Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
T0QW05_SAPDV1.970e-1448.91Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1A0HJF3_9ASCO5.570e-1241.51Uncharacterized protein n=1 Tax=Metschnikowia bicu... [more]
A9V9T1_MONBE6.520e-1141.67Lactoylglutathione lyase n=1 Tax=Monosiga brevicol... [more]
A0A512UMM7_9ASCO9.710e-1143.68Uncharacterized protein n=1 Tax=Metschnikowia sp. ... [more]
A0A4P6XGR8_9ASCO3.600e-1042.53Prp8 binding protein n=1 Tax=Metschnikowia aff. pu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12731contigEcto-sp13_S_contig12731:2692..3928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score92.4
Seed ortholog evalue2.3e-16
Seed eggNOG ortholog272952.HpaP812042
Model size542
KEGG koko:K14963
KEGG Pathwayko04934,map04934
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.WD domain, G-beta repeat
EggNOG OGs3Q7SN@4776,KOG0266@1,KOG0266@2759
Cds size540
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462680.8391821-CDS-Ecto-sp13_S_contig12731:2691..29251681462680.8391821-CDS-Ecto-sp13_S_contig12731:2691..2925Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12731 2692..2925 +
1681462680.8513267-CDS-Ecto-sp13_S_contig12731:3146..33531681462680.8513267-CDS-Ecto-sp13_S_contig12731:3146..3353Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12731 3147..3353 +
1681462680.8662026-CDS-Ecto-sp13_S_contig12731:3827..39261681462680.8662026-CDS-Ecto-sp13_S_contig12731:3827..3926Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12731 3828..3926 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12731.2263.1prot_Ecto-sp13_S_contig12731.2263.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12731 2692..3926 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12731.2263.1

>prot_Ecto-sp13_S_contig12731.2263.1 ID=prot_Ecto-sp13_S_contig12731.2263.1|Name=mRNA_Ecto-sp13_S_contig12731.2263.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=180bp
FSLGCTPPPASPRACRTYVSRPLTAVTGPPSREVFDPRVGLATAHLDSLG
LMNGGGIGVGSSGSGVAAGRVLVAEAKLSGHTAAVYVAKFSPRDSLVASA
GFDRTLRLWEGAYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQTVA
KWDTETGQRVGNMLSLEGLVQCVQVAAEGG
back to top

mRNA from alignment at Ecto-sp13_S_contig12731:2692..3928+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12731.2263.1 ID=mRNA_Ecto-sp13_S_contig12731.2263.1|Name=mRNA_Ecto-sp13_S_contig12731.2263.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12731:2692..3928+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCTCACTTGGTTGCACCCCCCCCCCGGCCTCTCCGCGCGCCTGTCGTAC ATACGTATCCCGTCCTTTGACTGCAGTCACGGGGCCGCCAAGCCGAGAAG TGTTCGACCCCCGCGTCGGACTCGCGACGGCCCACTTGGACTCTCTCGGC CTCATGAACGGGGGCGGGATAGGGGTCGGCAGCAGCGGCAGCGGAGTCGC GGCAGGACGAGTTCTCGTGGCAGAGGCAAAACTGGTGAGTATTGACCGCG GGGTTTCGAAGTCTGTATTGTTCCCCGTTTTCGTTTCTTGGTGTTGTCGT CGAACCTGACGAGAGCGCATATCCCGGTGTCCCATCTGTTGGCTACTCCG CGGTTCGCTATCGCGACTACAATCGCACTTCTGTCTGCCGCATATACCAC TATCACGGTCTATCTCTTTGCCCAAACCTTGCCCCCCCCCCACCCCCCTC CGCAGTCGGGCCACACGGCGGCCGTGTACGTGGCCAAATTCTCCCCGCGA GACAGCCTTGTTGCCTCCGCTGGGTTCGACCGGACCCTGCGGCTATGGGA GGGCGCCTACCCTTACAGCCAGGTGGCGTGCTTGGAGGGGCACCGCCAGT TGATCAGCGACCTCTGCTGGGCCCCTGACGGGAGGTCGCTTCTCAGCGCT TCGTTCGATCAGGTTTGGGGGCTCTGTTCTGGGTTGAATGAGTTGCACCT CGGAGATGACGCGCAGCTTAGGCAGAAGTGGGTTGTTGTCGAAATTTAGC TAAGTCGGTTGGCTTCTGACGGGATATGGGTTAGGTGGTGCTGGAACTAC TCTAGGCAGGCATCAGTAGTTGAGGGCTCCCCGGTCTGACAGCTCCCACT GACCGTGGGGGGGGGGGGCATGACGCACAACCGGGCCTCTCTCTTCTTCC TCTCTCTGGTGTTTCTCTCTTTGGTGTTTTGTGGTTGCACAGCGTAGTAC ATGCCACAAGGAAGCGTTGGTTGCTGTACATGCCAGCCTTTACGTGTTGT TACCAGGTAACTTCTGCCGTGCCGGCCCTCTATGGTCACACGTCATGGCG TCATGGCCACTGTGTTGTCTCTCAAGCTACAGCAAGACTTCCTCACCGCC GCCGACCCCCACCCCCCCCCTGTCACCGCGCTCCAGACCGTCGCCAAGTG GGACACGGAAACCGGCCAGAGAGTGGGCAACATGCTCTCGCTCGAAGGAC TAGTGCAGTGCGTCCAAGTGGCGGCAGAAGGCGGAGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12731:2692..3928+

>mRNA_Ecto-sp13_S_contig12731.2263.1 ID=mRNA_Ecto-sp13_S_contig12731.2263.1|Name=mRNA_Ecto-sp13_S_contig12731.2263.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=540bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12731:2692..3928+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCTCACTTGGTTGCACCCCCCCCCCGGCCTCTCCGCGCGCCTGTCGTAC
ATACGTATCCCGTCCTTTGACTGCAGTCACGGGGCCGCCAAGCCGAGAAG
TGTTCGACCCCCGCGTCGGACTCGCGACGGCCCACTTGGACTCTCTCGGC
CTCATGAACGGGGGCGGGATAGGGGTCGGCAGCAGCGGCAGCGGAGTCGC
GGCAGGACGAGTTCTCGTGGCAGAGGCAAAACTGTCGGGCCACACGGCGG
CCGTGTACGTGGCCAAATTCTCCCCGCGAGACAGCCTTGTTGCCTCCGCT
GGGTTCGACCGGACCCTGCGGCTATGGGAGGGCGCCTACCCTTACAGCCA
GGTGGCGTGCTTGGAGGGGCACCGCCAGTTGATCAGCGACCTCTGCTGGG
CCCCTGACGGGAGGTCGCTTCTCAGCGCTTCGTTCGATCAGACCGTCGCC
AAGTGGGACACGGAAACCGGCCAGAGAGTGGGCAACATGCTCTCGCTCGA
AGGACTAGTGCAGTGCGTCCAAGTGGCGGCAGAAGGCGGA
back to top