mRNA_Ecto-sp13_S_contig12731.2262.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12731.2262.1
Unique NamemRNA_Ecto-sp13_S_contig12731.2262.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12731.2262.1 vs. uniprot
Match: A0A6H5JS90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS90_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 5.320e-11
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 2 
Query:  212 LVVQEGEGNVNELGNIEGRYREMFEGWNSEEKTEAVLGSRKWFEKAGSDM 361
            L  +E E  + ELG I+G YREMFE WN EE+T AVLGSRKWFEKAG D+
Sbjct:  245 LYKKEREVYMTELGKIDGTYREMFEAWNREERTVAVLGSRKWFEKAGRDI 294
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BLAST of mRNA_Ecto-sp13_S_contig12731.2262.1 vs. uniprot
Match: A0A6H5JPI9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPI9_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.440e-10
Identity = 36/80 (45.00%), Postives = 44/80 (55.00%), Query Frame = 2 
Query:  122 VDEDFGR*AMKVQM*LRHRERRPGSCSYGVLVVQEGEGNVNELGNIEGRYREMFEGWNSEEKTEAVLGSRKWFEKAGSDM 361
            VDE++            HR      C    L  +E E  V ELG I+G YREMFE WN EE+T AV+G R+W EKAG D+
Sbjct:  659 VDEEYNEFKCDCGFVCEHRVHVVAECP---LYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVVGHRRWVEKAGRDI 735
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BLAST of mRNA_Ecto-sp13_S_contig12731.2262.1 vs. uniprot
Match: A0A6H5JTJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTJ8_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.530e-10
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 2 
Query:  212 LVVQEGEGNVNELGNIEGRYREMFEGWNSEEKTEAVLGSRKWFEKAGSDM 361
            L  +E E +V ELGN++G YREMFE WN EE+T AVLG R+W EKAG D+
Sbjct:   54 LYKKEMEVSVTELGNLDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDI 103
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BLAST of mRNA_Ecto-sp13_S_contig12731.2262.1 vs. uniprot
Match: A0A6H5K0I7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0I7_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 6.060e-10
Identity = 32/50 (64.00%), Postives = 37/50 (74.00%), Query Frame = 2 
Query:  212 LVVQEGEGNVNELGNIEGRYREMFEGWNSEEKTEAVLGSRKWFEKAGSDM 361
            L  +E E  V ELG I+G YREMFE W+ EEKTEAVLG R+W EKAG D+
Sbjct:  530 LYKKEREVYVTELGKIDGTYREMFEAWHREEKTEAVLGHRRWVEKAGRDI 579
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BLAST of mRNA_Ecto-sp13_S_contig12731.2262.1 vs. uniprot
Match: A0A6H5K453_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K453_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 8.770e-10
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 2 
Query:  212 LVVQEGEGNVNELGNIEGRYREMFEGWNSEEKTEAVLGSRKWFEKAGSDM 361
            L  +E E  V ELG I+G YREMFE WN EE+T AVLG R+W EKAG D+
Sbjct:   95 LYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWAEKAGRDI 144
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BLAST of mRNA_Ecto-sp13_S_contig12731.2262.1 vs. uniprot
Match: A0A6H5KJB2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB2_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.160e-9
Identity = 34/61 (55.74%), Postives = 39/61 (63.93%), Query Frame = 2 
Query:  179 ERRPGSCSYGVLVVQEGEGNVNELGNIEGRYREMFEGWNSEEKTEAVLGSRKWFEKAGSDM 361
            E R    S   L  +E E  V ELG I+G YREMFE WN EE+T AVLG R+W EKAG D+
Sbjct:  685 EDRGHGVSECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGKDI 745
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BLAST of mRNA_Ecto-sp13_S_contig12731.2262.1 vs. uniprot
Match: A0A6H5JCQ0_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ0_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.550e-9
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 2 
Query:  212 LVVQEGEGNVNELGNIEGRYREMFEGWNSEEKTEAVLGSRKWFEKAGSDM 361
            L  +E E  V ELG I+G YREMFE WN EE+T AVLG R+W EKAG D+
Sbjct:  163 LYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDI 212
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12731.2262.1 vs. uniprot
Match: A0A6H5JEG5_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEG5_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 2.050e-9
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 2 
Query:  212 LVVQEGEGNVNELGNIEGRYREMFEGWNSEEKTEAVLGSRKWFEKAGSDM 361
            +  +E E ++ ELG I+GRYREMFE WN EE+T AV+G R+W EKAG D+
Sbjct:  464 MYKKEREVHMTELGKIQGRYREMFEAWNREERTVAVVGHRRWVEKAGRDI 513
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12731.2262.1 vs. uniprot
Match: A0A6H5L729_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L729_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.380e-9
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 2 
Query:  212 LVVQEGEGNVNELGNIEGRYREMFEGWNSEEKTEAVLGSRKWFEKAGSDM 361
            L  +E E  V ELG I+G YREMFE WN EE+T AVLG R+W EKAG D+
Sbjct:  218 LYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDI 267
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12731.2262.1 vs. uniprot
Match: A0A6H5K863_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K863_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.680e-9
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 2 
Query:  212 LVVQEGEGNVNELGNIEGRYREMFEGWNSEEKTEAVLGSRKWFEKAGSDM 361
            L  +E E  V ELG I+G YREMFE WN EE+T AVLG R+W EKAG D+
Sbjct:  154 LYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDI 203
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12731.2262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JS90_9PHAE5.320e-1166.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPI9_9PHAE2.440e-1045.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JTJ8_9PHAE2.530e-1062.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0I7_9PHAE6.060e-1064.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K453_9PHAE8.770e-1062.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KJB2_9PHAE1.160e-955.74Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JCQ0_9PHAE1.550e-962.00Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEG5_9PHAE2.050e-958.00Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L729_9PHAE2.380e-962.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K863_9PHAE2.680e-962.00Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12731contigEcto-sp13_S_contig12731:1144..1645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size370
Hectar predicted targeting categoryother localisation
Exons2
Cds size201
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462680.7780845-CDS-Ecto-sp13_S_contig12731:1143..12211681462680.7780845-CDS-Ecto-sp13_S_contig12731:1143..1221Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12731 1144..1221 +
1681462680.7889943-CDS-Ecto-sp13_S_contig12731:1355..14781681462680.7889943-CDS-Ecto-sp13_S_contig12731:1355..1478Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12731 1356..1478 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462680.800083-UTR-Ecto-sp13_S_contig12731:1478..16451681462680.800083-UTR-Ecto-sp13_S_contig12731:1478..1645Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12731 1479..1645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12731.2262.1prot_Ecto-sp13_S_contig12731.2262.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12731 1144..1478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12731.2262.1

>prot_Ecto-sp13_S_contig12731.2262.1 ID=prot_Ecto-sp13_S_contig12731.2262.1|Name=mRNA_Ecto-sp13_S_contig12731.2262.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=67bp
GAPFQPQHRQALHLRQQALVHQRGATLKVKFRAGDIGLRERRRRFRKVGD
ESSNVIATPRAKTGFM*
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mRNA from alignment at Ecto-sp13_S_contig12731:1144..1645+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12731.2262.1 ID=mRNA_Ecto-sp13_S_contig12731.2262.1|Name=mRNA_Ecto-sp13_S_contig12731.2262.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=502bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12731:1144..1645+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGCGCCGTTTCAGCCCCAGCATCGGCAAGCCTTGCACCTGCGGCAGCA
AGCCCTGGTGCACCAACGGGGGGCAACGGTGAGTAGAGAGTCCGTCGATA
AATACTGGAGAGAGCGTAGTCGTCGCCATGCAGGGCCCTCCTCGTACAAC
TGTAAGCCCCCCACCATGCGAGGTCACGTCGTAAGACAAGCCCCTCCCTC
GGTGTTGCAAAGCTGAAGGTCAAATTCAGGGCCGGGGACATTGGCCTTCG
AGAACGTAGACGAAGATTTCGGAAGGTAGGCGATGAAAGTTCAAATGTGA
TTGCGACACCGAGAGCGAAGACCGGGTTCATGTAGCTACGGAGTCTTGGT
CGTACAAGAAGGAGAGGGGAATGTAAATGAACTGGGAAATATAGAAGGAA
GGTATAGGGAGATGTTTGAGGGATGGAATAGCGAGGAAAAGACGGAAGCC
GTACTGGGGAGTAGGAAGTGGTTTGAAAAGGCGGGAAGCGATATGGATGG
GA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12731:1144..1645+

>mRNA_Ecto-sp13_S_contig12731.2262.1 ID=mRNA_Ecto-sp13_S_contig12731.2262.1|Name=mRNA_Ecto-sp13_S_contig12731.2262.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12731:1144..1645+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGCGCCGTTTCAGCCCCAGCATCGGCAAGCCTTGCACCTGCGGCAGCA
AGCCCTGGTGCACCAACGGGGGGCAACGCTGAAGGTCAAATTCAGGGCCG
GGGACATTGGCCTTCGAGAACGTAGACGAAGATTTCGGAAGGTAGGCGAT
GAAAGTTCAAATGTGATTGCGACACCGAGAGCGAAGACCGGGTTCATGTA
G
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