mRNA_Ecto-sp13_S_contig12728.2258.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12728.2258.1
Unique NamemRNA_Ecto-sp13_S_contig12728.2258.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12728.2258.1 vs. uniprot
Match: D7FWP5_ECTSI (Arrestin_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWP5_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 2.440e-47
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:    1 SSADELVLRLYGVAKTRVMYDTTNMAHNNSNAQSYTHREMLTEKKEFLSYDVQLAAFGGKAASGSHSFPFQVMLPPGLPPSM 246
            SSADELVLRLYGVAKTRVMYDTTNMAHNNSNAQSYTHREMLTEKKEFLSYDVQLAAFGGKAASGSHSFPFQVMLPPGLPPSM
Sbjct:   36 SSADELVLRLYGVAKTRVMYDTTNMAHNNSNAQSYTHREMLTEKKEFLSYDVQLAAFGGKAASGSHSFPFQVMLPPGLPPSM 117
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BLAST of mRNA_Ecto-sp13_S_contig12728.2258.1 vs. uniprot
Match: A0A6H5KH15_9PHAE (Arrestin_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH15_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.740e-20
Identity = 48/82 (58.54%), Postives = 57/82 (69.51%), Query Frame = 1 
Query:    1 SSADELVLRLYGVAKTRVMYDTTNMAHNNSNAQSYTHREMLTEKKEFLSYDVQLAAFGGKAASGSHSFPFQVMLPPGLPPSM 246
            S A  LV+RL G+AKTR M+  T +    S A  YT+R+ML+E  EFL YDVQLA FGGKAASG H++ F V LPP LP SM
Sbjct:   35 SPAGSLVIRLVGLAKTRAMFIATGVVPTTSGAAPYTYRDMLSEDVEFLGYDVQLADFGGKAASGEHTYDFSVTLPPSLPASM 116
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BLAST of mRNA_Ecto-sp13_S_contig12728.2258.1 vs. uniprot
Match: D7FWP6_ECTSI (Arrestin_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWP6_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.730e-19
Identity = 46/82 (56.10%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:    1 SSADELVLRLYGVAKTRVMYDTTNMAHNNSNAQSYTHREMLTEKKEFLSYDVQLAAFGGKAASGSHSFPFQVMLPPGLPPSM 246
            S A  LV+RL G+AKTR M+  T +    S A  YT+R+ L+E  EFL YDVQLA FGG+AASG H++ F V LPP LP SM
Sbjct:   35 SPAGSLVIRLVGLAKTRAMFTATGVVPTESGAAPYTYRDTLSEDVEFLGYDVQLADFGGRAASGEHTYDFSVTLPPSLPASM 116
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12728.2258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FWP5_ECTSI2.440e-47100.00Arrestin_N domain-containing protein n=2 Tax=Ectoc... [more]
A0A6H5KH15_9PHAE1.740e-2058.54Arrestin_C domain-containing protein n=1 Tax=Ectoc... [more]
D7FWP6_ECTSI1.730e-1956.10Arrestin_N domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12728contigEcto-sp13_S_contig12728:4517..4762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size246
Hectar predicted targeting categoryother localisation
Exons1
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462680.4609928-CDS-Ecto-sp13_S_contig12728:4516..47621681462680.4609928-CDS-Ecto-sp13_S_contig12728:4516..4762Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12728 4517..4762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12728.2258.1prot_Ecto-sp13_S_contig12728.2258.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12728 4517..4762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12728.2258.1

>prot_Ecto-sp13_S_contig12728.2258.1 ID=prot_Ecto-sp13_S_contig12728.2258.1|Name=mRNA_Ecto-sp13_S_contig12728.2258.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
SSADELVLRLYGVAKTRVMYDTTNMAHNNSNAQSYTHREMLTEKKEFLSY
DVQLAAFGGKAASGSHSFPFQVMLPPGLPPSM
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mRNA from alignment at Ecto-sp13_S_contig12728:4517..4762+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12728.2258.1 ID=mRNA_Ecto-sp13_S_contig12728.2258.1|Name=mRNA_Ecto-sp13_S_contig12728.2258.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12728:4517..4762+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTCGGCGGATGAGCTCGTGCTCCGACTGTATGGCGTGGCCAAGACTCG
GGTCATGTACGACACGACGAACATGGCCCACAACAATAGCAACGCGCAGT
CGTACACCCACCGAGAAATGCTGACCGAGAAGAAGGAGTTCCTCTCGTAC
GATGTCCAGCTAGCGGCTTTCGGGGGGAAGGCGGCGTCAGGGAGCCATAG
CTTCCCTTTCCAAGTGATGCTTCCCCCGGGGCTGCCGCCATCCATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12728:4517..4762+

>mRNA_Ecto-sp13_S_contig12728.2258.1 ID=mRNA_Ecto-sp13_S_contig12728.2258.1|Name=mRNA_Ecto-sp13_S_contig12728.2258.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12728:4517..4762+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTCGGCGGATGAGCTCGTGCTCCGACTGTATGGCGTGGCCAAGACTCG
GGTCATGTACGACACGACGAACATGGCCCACAACAATAGCAACGCGCAGT
CGTACACCCACCGAGAAATGCTGACCGAGAAGAAGGAGTTCCTCTCGTAC
GATGTCCAGCTAGCGGCTTTCGGGGGGAAGGCGGCGTCAGGGAGCCATAG
CTTCCCTTTCCAAGTGATGCTTCCCCCGGGGCTGCCGCCATCCATG
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