mRNA_Ecto-sp13_S_contig12726.2256.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12726.2256.1
Unique NamemRNA_Ecto-sp13_S_contig12726.2256.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12726.2256.1 vs. uniprot
Match: A0A6H5KTZ2_9PHAE (Myosin motor domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTZ2_9PHAE)

HSP 1 Score: 396 bits (1017), Expect = 6.900e-125
Identity = 226/279 (81.00%), Postives = 236/279 (84.59%), Query Frame = 1 
Query:    1 ARAGFPVRMQHLEFVNRYGLLAVNILQEAWAEAKKEFPDIVREQERAVAREILFEVVPMLSKNSVSKKDMTKSKNTPGVRLAGKLSGVAQQASFRDLCGQGGVQIGNTKVFFRQMAFNRAEKARTLRLSEACVTIQTAFRRHMIEQDYKTMRKGTVA--LQAQVRGHQARLKVLALRYLNACLMAQRIVRGFVKRTQYKRTKDAALKVQSWGRMSAVRRSYQEDRSRAITVQCLARTRSAKSELRKRKKEKENVDALQAKIKAYEQAAKAREAELRREQ 831
            ARAGFPVRMQHLEFVNRYGLLAVNILQEAWAEAKKEFPD+VREQERAVAREILFEVVPMLSKNSVSKKDMT+SKNT GVRLAGKLSGVAQQASFRDLCGQGGVQIGNTKVFFRQ+                C+                    G+V+   +AQVRGHQARLKVLA+RYLNACLMAQR+VRGFVKRTQYKRTKDAALKVQSWGRMS VRRSYQ+DRS  ITVQCLARTRSAKSELRKRKKEKENVDALQAKIKAYEQAAKAREAELRREQ
Sbjct:  780 ARAGFPVRMQHLEFVNRYGLLAVNILQEAWAEAKKEFPDMVREQERAVAREILFEVVPMLSKNSVSKKDMTQSKNTAGVRLAGKLSGVAQQASFRDLCGQGGVQIGNTKVFFRQV----------------CIGYD-----------------GSVSGMSKAQVRGHQARLKVLAVRYLNACLMAQRVVRGFVKRTQYKRTKDAALKVQSWGRMSVVRRSYQKDRSXXITVQCLARTRSAKSELRKRKKEKENVDALQAKIKAYEQAAKAREAELRREQ 1025
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BLAST of mRNA_Ecto-sp13_S_contig12726.2256.1 vs. uniprot
Match: D7G635_ECTSI (Myosin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G635_ECTSI)

HSP 1 Score: 313 bits (803), Expect = 2.200e-93
Identity = 259/269 (96.28%), Postives = 262/269 (97.40%), Query Frame = 1 
Query:  454 RKGTVALQAQVRGHQARLKVLALRYLNACLMAQRIVRGFVKRTQYKRTKDAALKVQSWGRMSAVRRSYQEDRSRAITVQCLARTRSAKSELRKRKKEKENVDALQAKIKAYEQAAKAREAELRREQEAAIARIKAEAEATARAEMREKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEAEMAAERAEAESKKAATAAAANGGTXXXXXXXXXXXXXXHSNARGGLRLASPGGSSDGTEMNSLSARSS 1260
            RKGTVALQAQVRGHQARLKVLALRYLNACLMAQRIVRGFVKRTQYKRTKDAALKVQSWGRMS V+RSYQ+DRSRAITVQCLARTRSAKSELRKR KEKENVDALQAKIKAYEQAAKAREAELRREQEAAIARIKAEAEATARAEMREK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  AE+AAERAEAESKKAATAAAANGGTXXXXXXXXXXXXXX SN RGGLRLASPGGSSDGTEMNSLSARSS
Sbjct:  688 RKGTVALQAQVRGHQARLKVLALRYLNACLMAQRIVRGFVKRTQYKRTKDAALKVQSWGRMSVVQRSYQKDRSRAITVQCLARTRSAKSELRKRXKEKENVDALQAKIKAYEQAAKAREAELRREQEAAIARIKAEAEATARAEMREKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAELAAERAEAESKKAATAAAANGGTXXXXXXXXXXXXXXXSNVRGGLRLASPGGSSDGTEMNSLSARSS 956
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BLAST of mRNA_Ecto-sp13_S_contig12726.2256.1 vs. uniprot
Match: A0A6H5JKL4_9PHAE (Myosin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKL4_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 5.260e-17
Identity = 59/171 (34.50%), Postives = 91/171 (53.22%), Query Frame = 1 
Query:    1 ARAGFPVRMQHLEFVNRYGLLAVNILQEAWAEAKKEFPDIVREQERAVAREILFEVVPMLSKNSVSKKDMTKSKNTPGVRLAGKLSGVAQQASFRDLCGQGGVQIGNTKVFFRQMAFNRAEKARTLRLSEACVTIQTAFRRHMIEQDYKTMRKGTVALQAQVRGHQARLKV 513
            ARAGFPVR+   EF++RYG+LA  +++ A+    ++  +I +E ERAV + ++  +V  ++K   +                      + +  F  LC   G+Q+G TKVFF+Q AFN  E+ RT  +S +   IQTA R  +  + +   RK  V++QA VRG Q R  V
Sbjct:  335 ARAGFPVRLGIQEFIDRYGVLAPLVVETAYRNCAQDGGEIDQESERAVCKALVVSIVAKVTKGKAN---------------------ASTEEQFMALCRDVGMQMGLTKVFFQQKAFNSIERLRTAMISNSITKIQTALRCWLARKKFCRDRKAAVSVQAWVRGEQVRATV 484
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BLAST of mRNA_Ecto-sp13_S_contig12726.2256.1 vs. uniprot
Match: D8LLV4_ECTSI (Myosin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV4_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.970e-16
Identity = 58/171 (33.92%), Postives = 90/171 (52.63%), Query Frame = 1 
Query:    1 ARAGFPVRMQHLEFVNRYGLLAVNILQEAWAEAKKEFPDIVREQERAVAREILFEVVPMLSKNSVSKKDMTKSKNTPGVRLAGKLSGVAQQASFRDLCGQGGVQIGNTKVFFRQMAFNRAEKARTLRLSEACVTIQTAFRRHMIEQDYKTMRKGTVALQAQVRGHQARLKV 513
            ARAGFPVR+   EF++RYG+LA  +++ A+    ++  +I +E ERAV + ++  +V  ++K   +                      + +  F  LC   G+Q+G TKVFF+Q AFN  E+ RT  +S +   IQT  R  +  + +   RK  V++QA VRG Q R  V
Sbjct:  773 ARAGFPVRLGIQEFIDRYGVLAPLVVETAYRNCAQDGGEIDQESERAVCKALVVSIVAKVTKGRAN---------------------ASTEEQFMALCRDVGMQMGLTKVFFQQKAFNSIERLRTAMISNSITKIQTTLRCWLARKKFLRDRKAAVSVQAWVRGEQVRATV 922
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BLAST of mRNA_Ecto-sp13_S_contig12726.2256.1 vs. uniprot
Match: A0A836CJ42_9STRA (Myosin-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ42_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 7.500e-12
Identity = 58/158 (36.71%), Postives = 81/158 (51.27%), Query Frame = 1 
Query:    1 ARAGFPVRMQHLEFVNRYGLLAVNILQEAWAEAKKEFPDIVREQERAVAREILFEVVPMLSKNSVSKKDMTKSKNTPGVRLAGKLSGVAQQASFRDLCGQGGVQIGNTKVFFRQMAFNRAEKARTLRLSEACVTIQTAFRRHMI-EQDYKTMRKGTVA 471
            ARAGFPVR+   EFV RYGLLA   L+ A+  +  E      +QER V RE++  V+ + +  S    D++K                     F   C   G+Q+G TKVFF+Q AFN+ EK RT  L++A   IQ  +R + + E+    +RKG  A
Sbjct:  755 ARAGFPVRLGVSEFVQRYGLLAPGALESAYRRSVME-----ADQERFVCRELIVAVLKLANGGSA---DVSKD--------------------FARACRDNGLQLGLTKVFFQQRAFNKVEKLRTAALAQAATKIQRQWRCYRLPERQEYLLRKGFAA 884
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BLAST of mRNA_Ecto-sp13_S_contig12726.2256.1 vs. uniprot
Match: A0A835ZAR7_9STRA (Myosin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAR7_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.000e-11
Identity = 55/140 (39.29%), Postives = 77/140 (55.00%), Query Frame = 1 
Query:    1 ARAGFPVRMQHLEFVNRYGLLAVNILQEAWAEAKKEFPDIVREQERAVAREILFEVVPMLSKNSVSKKDMTKSKNTPGVRLAGKLSGVAQQASFRDLCGQGGVQIGNTKVFFRQMAFNRAEKARTLRLSEACVTIQTAFR 420
            ARAGFPVR+   EFV RYGLLA   L++A+  + +E     R+QER V RE++  V+ + +               PG    G++S     A F   C   G+Q+G TKVFF+Q AFN+ E+ RT  ++ A V IQ  +R
Sbjct:  758 ARAGFPVRLGVSEFVQRYGLLAPGALEDAYRRSVRENE---RDQERFVCRELIVAVLKLAN---------------PG----GEVS-----ADFARACRDNGLQMGLTKVFFQQRAFNKIEQLRTASVTTAAVKIQARWR 870
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12726.2256.1 vs. uniprot
Match: D7FGT5_ECTSI (Myosin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT5_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.840e-10
Identity = 67/238 (28.15%), Postives = 112/238 (47.06%), Query Frame = 1 
Query:    1 ARAGFPVRMQHLEFVNRYGLLAVNILQEAWAEAKKEFPDIVREQERAVAREILFEVVPMLSKNSVSKKDMTKSKNTPGVRLAGKLSGVAQQASFRDLCGQGGVQIGNTKVFFRQMAFNRAEKARTLRLSEACVTIQTAFRRHMIEQDYKTMRKGTVAL---QAQVRGHQA-RLKVLALRYLNACLMAQRIVRGFVKRTQYKRTKDAALKVQSWGRMSAVRRSYQEDRSRAITVQCLAR 702
            ARAGFPVR+   EFV RY LL   +++ A+  A     D   +QER+V + ++  +   L   S S                          +F+++C + G+Q+G TK+FF+Q AFN  EK RT  +S +   +QT +R     + +  ++KG +A      ++RG  A R++ LA RY+      +R      +R      +   L+++  G ++ +R    E +  A   Q LA+
Sbjct:  806 ARAGFPVRLGLHEFVERYALLGARVVEAAYRRAVH---DAELDQERSVCKALIMAIQEKLKPGSPS-----------------------SAGNFQEICREQGMQMGLTKIFFQQKAFNSIEKLRTTIVSRSATIVQTFWRGVSCRRAF-LIQKGLMAAGDGTRRLRGLAACRIQRLARRYIWTVTKNRREAAARAEREAQLVAQMEELRIKMQGEINELRAELAEAKQLAKQGQALAK 1016
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BLAST of mRNA_Ecto-sp13_S_contig12726.2256.1 vs. uniprot
Match: A0A7S3UT43_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UT43_HETAK)

HSP 1 Score: 67.8 bits (164), Expect = 1.390e-8
Identity = 52/180 (28.89%), Postives = 89/180 (49.44%), Query Frame = 1 
Query:  265 AQQASFRDLCGQGGVQIGNTKVFFRQMAFNRAEKARTLRLSEACVTIQTAFRRHMIEQDYKTMRKGTVALQAQVRGHQARLKVLALRYLNACLM------AQRIVRGFVKRTQYKRTKDAALKVQSWGRMSAVRRSYQEDRSRAITVQCLARTRSAKSELRKRKKEKENVDALQAKIKAY 786
            A + +F+   G  GVQ+G TK FFRQ AFN  E+ART +L      IQ A+RRH  +  Y+ ++     LQ   RG              A L        Q+  + + +R   +RT   A  +Q + R S  R+ +   R+ A+ +Q   R ++A + +R  K++ ++V+ L+ +++ +
Sbjct:    2 ADERAFQAAMGAAGVQVGLTKCFFRQAAFNALERARTAKLVAGATQIQAAYRRHREQAWYEVVKFAVRFLQRVGRGRLXXXXXXXXXXXRAALRIQTAFRCQKAYKAYQRRVLEERT---ATALQGFLRSSRDRKRFLVKRAAAVHIQATLRRKAAAARMRVLKRQSKDVNHLKYQLEEF 178
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BLAST of mRNA_Ecto-sp13_S_contig12726.2256.1 vs. uniprot
Match: A0A7S3UTF1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTF1_HETAK)

HSP 1 Score: 67.8 bits (164), Expect = 1.660e-8
Identity = 52/180 (28.89%), Postives = 89/180 (49.44%), Query Frame = 1 
Query:  265 AQQASFRDLCGQGGVQIGNTKVFFRQMAFNRAEKARTLRLSEACVTIQTAFRRHMIEQDYKTMRKGTVALQAQVRGHQARLKVLALRYLNACLM------AQRIVRGFVKRTQYKRTKDAALKVQSWGRMSAVRRSYQEDRSRAITVQCLARTRSAKSELRKRKKEKENVDALQAKIKAY 786
            A + +F+   G  GVQ+G TK FFRQ AFN  E+ART +L      IQ A+RRH  +  Y+ ++     LQ   RG              A L        Q+  + + +R   +RT   A  +Q + R S  R+ +   R+ A+ +Q   R ++A + +R  K++ ++V+ L+ +++ +
Sbjct:    2 ADERAFQAAMGAAGVQVGLTKCFFRQAAFNALERARTAKLVAGATQIQAAYRRHREQAWYEVVKFAVRFLQRVGRGRLXXXXXXXXXXXRAALRIQTAFRCQKAYKAYQRRVLEERT---ATALQGFLRSSRDRKRFLVKRAAAVHIQATLRRKAAAARMRVLKRQSKDVNHLKYQLEEF 178
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BLAST of mRNA_Ecto-sp13_S_contig12726.2256.1 vs. uniprot
Match: A0A8J4R3Z8_9ROSI (Uncharacterized protein n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4R3Z8_9ROSI)

HSP 1 Score: 66.2 bits (160), Expect = 6.820e-8
Identity = 74/279 (26.52%), Postives = 110/279 (39.43%), Query Frame = 1 
Query:    7 AGFPVRMQHLEFVNRYGLLAVNILQEAWAEAKKEFPDIVREQERAVAREILFEVVPMLSKNSVSKKDMTKSKNTPGVRLAGKLSGVAQQASFRDLCGQGGVQIGNTKVFFRQMAFNRAEKARTLRLSEACVTIQTAFRRHMIEQDYKTMRKGTVALQAQVRGHQAR-----------------------LKVLALRYLNACLMAQRIVRGFVKRTQY---KRTKDAALKVQSWGRMSAVRRSYQEDRSRAITVQCLARTRSAKSELRKRKKEKENVDAL 765
            AG+P R  + EF++RYGLLA+ +L   +              E+A+  +IL                                    Q+    +       Q+G TKVF R       +  R   L  A   +Q  FR  +  +D+ + R    ALQA  RG  AR                       L    ++  +A ++ Q  VRGF  R ++   KR K A L +Q+  RM  VR  ++  ++  I +QCL R + AK ELR+RK+E     AL
Sbjct:  667 AGYPTRRTYSEFIDRYGLLALELLDGCY-------------DEKALTEKIL------------------------------------QKLKLENF------QLGRTKVFLRAGQIGILDSRRAEILDNAAKCVQRQFRTFIARRDFLSTRTAASALQACCRGCLAREVYAAKRETAAAVSIQKYVRRWLLSCAYMKLCSAAIVIQSNVRGFTIRQRFLQGKRHKAATL-IQARWRMHKVRMIFRHRQTSIIAIQCLWRQKLAKRELRRRKQEANEAGAL 889
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12726.2256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5KTZ2_9PHAE6.900e-12581.00Myosin motor domain-containing protein (Fragment) ... [more]
D7G635_ECTSI2.200e-9396.28Myosin-like protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5JKL4_9PHAE5.260e-1734.50Myosin motor domain-containing protein n=1 Tax=Ect... [more]
D8LLV4_ECTSI1.970e-1633.92Myosin-like protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A836CJ42_9STRA7.500e-1236.71Myosin-like protein (Fragment) n=1 Tax=Tribonema m... [more]
A0A835ZAR7_9STRA1.000e-1139.29Myosin-like protein n=1 Tax=Tribonema minus TaxID=... [more]
D7FGT5_ECTSI1.840e-1028.15Myosin-like protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A7S3UT43_HETAK1.390e-828.89Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3UTF1_HETAK1.660e-828.89Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J4R3Z8_9ROSI6.820e-826.52Uncharacterized protein n=1 Tax=Castanea mollissim... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12726contigEcto-sp13_S_contig12726:871..4956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score317.4
Seed ortholog evalue9.9e-84
Seed eggNOG ortholog2880.D7G635
Model size1260
KEGG koko:K10357
Hectar predicted targeting categoryother localisation
GOsGO:0000146,GO:0000166,GO:0000278,GO:0000281,GO:0000302,GO:0000910,GO:0001891,GO:0001931,GO:0003674,GO:0003774,GO:0003779,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006935,GO:0006950,GO:0006970,GO:0006971,GO:0006979,GO:0006996,GO:0007010,GO:0007015,GO:0007033,GO:0007049,GO:0007154,GO:0008064,GO:0008092,GO:0008104,GO:0008144,GO:0008150,GO:0008360,GO:0009267,GO:0009581,GO:0009582,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010639,GO:0014070,GO:0014074,GO:0015629,GO:0016020,GO:0016043,GO:0016050,GO:0016459,GO:0016460,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022603,GO:0022604,GO:0022607,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030038,GO:0030048,GO:0030139,GO:0030554,GO:0030587,GO:0030832,GO:0030833,GO:0030837,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030898,GO:0031033,GO:0031034,GO:0031152,GO:0031154,GO:0031254,GO:0031268,GO:0031270,GO:0031333,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032060,GO:0032153,GO:0032155,GO:0032271,GO:0032272,GO:0032502,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032796,GO:0032956,GO:0032970,GO:0032982,GO:0032991,GO:0033036,GO:0033043,GO:0033275,GO:0033298,GO:0033554,GO:0034461,GO:0034622,GO:0035639,GO:0036094,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042542,GO:0042594,GO:0042623,GO:0042641,GO:0042802,GO:0042803,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044464,GO:0044764,GO:0044877,GO:0045177,GO:0045179,GO:0045335,GO:0046677,GO:0046683,GO:0046847,GO:0046983,GO:0048519,GO:0048523,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050982,GO:0051015,GO:0051017,GO:0051128,GO:0051129,GO:0051179,GO:0051301,GO:0051493,GO:0051494,GO:0051591,GO:0051606,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0060327,GO:0060328,GO:0061572,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070252,GO:0070938,GO:0071496,GO:0071840,GO:0071889,GO:0071944,GO:0090066,GO:0090702,GO:0097159,GO:0097204,GO:0097367,GO:0097435,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568,GO:0099738,GO:0110053,GO:0120025,GO:0120031,GO:0120036,GO:1901265,GO:1901363,GO:1901698,GO:1901700,GO:1902903,GO:1902904,GO:1903047,GO:1990753
Exons7
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
Ec32 ortholog descriptionP-type ATPase, A domain
Ec32 orthologEc-27_001110.6
Cds size1236
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12726.2256.1prot_Ecto-sp13_S_contig12726.2256.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12726 871..4932 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462680.290734-CDS-Ecto-sp13_S_contig12726:870..11731681462680.290734-CDS-Ecto-sp13_S_contig12726:870..1173Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12726 871..1173 -
1681462680.3021746-CDS-Ecto-sp13_S_contig12726:1648..18161681462680.3021746-CDS-Ecto-sp13_S_contig12726:1648..1816Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12726 1649..1816 -
1681462680.3103263-CDS-Ecto-sp13_S_contig12726:2256..24601681462680.3103263-CDS-Ecto-sp13_S_contig12726:2256..2460Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12726 2257..2460 -
1681462680.3184838-CDS-Ecto-sp13_S_contig12726:2768..29061681462680.3184838-CDS-Ecto-sp13_S_contig12726:2768..2906Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12726 2769..2906 -
1681462680.3268383-CDS-Ecto-sp13_S_contig12726:3446..35511681462680.3268383-CDS-Ecto-sp13_S_contig12726:3446..3551Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12726 3447..3551 -
1681462680.3375757-CDS-Ecto-sp13_S_contig12726:3880..40731681462680.3375757-CDS-Ecto-sp13_S_contig12726:3880..4073Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12726 3881..4073 -
1681462680.345662-CDS-Ecto-sp13_S_contig12726:4807..49321681462680.345662-CDS-Ecto-sp13_S_contig12726:4807..4932Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12726 4808..4932 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462680.355735-UTR-Ecto-sp13_S_contig12726:4932..49561681462680.355735-UTR-Ecto-sp13_S_contig12726:4932..4956Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12726 4933..4956 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12726.2256.1

>prot_Ecto-sp13_S_contig12726.2256.1 ID=prot_Ecto-sp13_S_contig12726.2256.1|Name=mRNA_Ecto-sp13_S_contig12726.2256.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=412bp
MQHLEFVNRYGLLAVNILQEAWAEAKKEFPDIVREQERAVAREILFEVVP
MLSKNSVSKKDMTKSKNTPGVRLAGKLSGVAQQASFRDLCGQGGVQIGNT
KVFFRQMAFNRAEKARTLRLSEACVTIQTAFRRHMIEQDYKTMRKGTVAL
QAQVRGHQARLKVLALRYLNACLMAQRIVRGFVKRTQYKRTKDAALKVQS
WGRMSAVRRSYQEDRSRAITVQCLARTRSAKSELRKRKKEKENVDALQAK
IKAYEQAAKAREAELRREQEAAIARIKAEAEATARAEMREKARLEEERRV
REEHEAKVRAQEEKMEKDAAEMKARIEEEYRVKAETEARAKIEAEMAAER
AEAESKKAATAAAANGGTAAGTANGGVGAGSSHSNARGGLRLASPGGSSD
GTEMNSLSARSS
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mRNA from alignment at Ecto-sp13_S_contig12726:871..4956-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12726.2256.1 ID=mRNA_Ecto-sp13_S_contig12726.2256.1|Name=mRNA_Ecto-sp13_S_contig12726.2256.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4086bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12726:871..4956- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTCGGGCCGGCTTCCCCGTCCGCATGCAGCACCTGGAGTTCGTAAATAG
ATACGGTCTTCTCGCCGTGAACATCCTCCAGGAGGCGTGGGCGGAGGCGA
AGAAGGAGTTCCCTGATATCGTTAGAGAACAAGAGAGGGCCGTCGCCAGG
TGAGTTTTGTCTGTGGGGGTGTGGATCGGTGTCTCGTACTTGGGGGGGGG
GGGATATTTCTTGTTGTTCGCATCGACGGACGTCGATCCTGGTGCGGCTG
AAAACAGAAAATGCTTCGAAAGGCGATGTGCGTCGTGTTTGTGTGATTGG
CATCGACCCGTGCTCACCGTGTTAATCAGTACGGCGGGCTGGCGCGGAGG
AGGGTGCGACAACCTATCCTCCATCTGGCTCTATTTCCTTAGCCGTGACC
CTCAGCCTATCTCAACCATCAATGTCTCAACCCAATCCTCTCTCATCACA
ACAACCGCTAATCCCAACCCTAGACGACTCCCTCCCAAAAACTAGTACAA
AGAAACGGCGTGTCTAAATACCCCACCAGCTGCATCTCGCCCTACAAGAC
ATAAATCGACGAAGGACATGCTGCTGTGTTGTGGGCTATGGTGGGACCCA
TCGTACCGCCGAAACGGTTCAGATTTGGTGCAGCCACAGCTGAGGGAGGA
AATTTATCAGCTGCCCCAAGCTCCTGCACTGGTGGGGTACACCCCCCCAG
GAGAAAGAAGCGCAGCTTTCAGTGATTTTGGGTGCCTGGGGAGCACCATT
GCGCTGACCTATGCTCTTACCCCAATGGTGTGGGATTTAGACGCGCCGAG
AACGAAACGGACCAACAACAGCAACAACCCCAACCCTGAACAACATTCCC
CCCCCCAAAAAAAATGTAAACATATATGAATAGGGAGATTTTGTTCGAGG
TGGTGCCGATGCTGAGCAAGAACTCGGTGTCGAAGAAGGACATGACCAAG
TCCAAGAACACGCCTGGGGTGAGGCTCGCCGGCAAGCTGTCGGGGGTGGC
CCAACAGGCTAGCTTCCGAGACCTGTGCGGGCAGGGTGGGGTACAGATCG
GGAACACTAAGGTGTTCTTCCGACAGGTGAGCTGTTTATAGCTGCAGCTA
AGATAGGCAACCGTTTTTAGGGCTGTTCCTTGTGGCATGTGGATTAGGCA
GGCCTGATACGTACGCATCATGTTTTCGAGCTGTGCTGGTTCTGGGATGG
GTAAGGTAAGTAGGAAGATACGCACCCTCAAAAGCAAGGCCTAGCAGGTG
CTGTGGATGACACGTGTGTATTGTGCTAGGAACCCTGTTTGAAGAGGATC
TCCACATGACCCTGTAATTTGTGTTTACGTACGAATTTTGTCTCAGAAGT
GTTGGCTTTTTTTTTTCGTCTTCGTTCTTCTTCCCTTCCTTGTCTTGTGG
CGCAGATGGCTTTCAACCGCGCGGAGAAGGCGAGGACTTTGAGGCTCTCG
GAAGCGTGCGTGACGATACAGACGGCCTTCCGGCGACACATGATCGAGCA
AGACTACAAGGCAAGATATGTACAGATTGGCGCTATTTCATGTTGTTGGT
GGAGCAAGACTACAAAGCAAGACTGCTGTATAGATTATCCAGGTTTTTCA
GTTTTTTTTTGTTGTGGGTTCGTTGAGGTCTGCTGAGCTCTTCGTGTCAA
AAACACGTCAGTGGGTGTGAGCTATTCGAGGTTGGGAAACGTCACCGATG
GCAGCTAGCAGCTGGTTCACACCCGCCAAAAAGATGCTTTCCTTTCATCT
TGCATCACGCCTTGACGGCACGACTTTTTCGATGCTCTGATGAGCCCTTT
TCGGAGGCTCGCCTTGTGGACTATGGTATGCATATGTTGCAGATTCCTAG
GGAAGACGAAAGTACGAAGGGCACTCTCCAGCTAGTGGTAGGTGTGTGTG
CGGACCCCCCCCCCTCGCCACCGACTGTCACCCACTCTAATGCGATTTTA
GCCAGTGCTGGTTTGTGTCTAATCGACTCCCACTCACTCTCTTTCTCTCC
ATCTCTCTCCCCTTTTGCCTCTTTTGGGGTTGGGCTTGACGGCCGACCAG
ACGATGAGAAAGGGGACGGTGGCCTTGCAGGCCCAGGTGCGGGGCCACCA
GGCGAGACTAAAGGTGCTGGCGCTTCGCTACCTCAACGCCTGCCTCATGG
CTCAGAGGATCGTAAGGGGCTTCGTCAAGCGAACTCAGGTATTGCCGGTA
GTTTTAGTAGTAGCAGCAATACAGCAGCGGGAGGAATGGTATAAATTGTA
GTGAAAAGTAGAGGTAGTAGTAGAGTAGTAGAGTTGGGGGTCATCTTACG
AACACTACCCGGACACGAACGCGGAGATGGATACCTCACGTAGGGTTGGG
GGTCAATTTACTAACATTCCCCCGCCACCAACCCGGAGATATATACCCCA
CCTTTTCACATTACCCCCCCCCCCCCCCCCGAATTCTCGATATCCCGTGC
CCCCCTCTGCGAACCCCACCAAATTTCCACAACTCCAACACAACAGTACA
AGCGAACCAAGGATGCGGCGTTGAAGGTGCAGTCATGGGGGAGGATGTCG
GCGGTTCGGAGAAGCTACCAGGAGGACCGGTCGAGGGCGATTACGGTGCA
GTGCCTGGCGAGGACGAGGTCGGCCAAATCAGAGCTGCGGAAACGTAAAA
AGGAGAAGGAGAACGTGGATGCCTTGCAGGCCAAGATCAAGGCCTACGAG
GTGTGTGTGCGTGGTGAAGGATATCATGCGCGCGACTTTTTTCTGGTTTT
TCTCCTCTCTCATGTTTTGTCTATTTATTTTCCTTTTTCTCCTGTTCTTA
CTCTTTTTTTTTTTTTTTTTTTGTTTTTTGCGCTTCTTTCTGATGGTTTG
GTCGAGAGGGAAACGTACATGCGTGTGTACACATGGCTGTGTGTTGTGTT
GGTCTTGTTAGTCGCTGTACTTGTTTTGCCATGCCCAGGGCGAGCCCTGT
TTTTCCCTGGTATGTTGATGGCACCCGACAAGAAACGAGAAAAGCGGTGG
TTGCCTTGGTTCGTTTTTTCCCACCGCTACAAGTCCTCGCACTAATTTCA
CACCGTCGGACGCACAACGGCTCCACTTGTCTACTTATTCTTGTGCTTTT
CGCTGTTGTGTTTTCTTGTCTGTATATGTTTTTTTTTCAGCAAGCGGCGA
AGGCGAGGGAGGCGGAGTTACGGCGGGAGCAGGAGGCGGCTATCGCTCGG
ATCAAGGCGGAAGCGGAGGCGACGGCCAGGGCGGAGATGCGGGAAAAGGC
GCGGCTGGAGGAGGAGCGGAGGGTACGAGAAGAGCACGAGGCGAAAGTCA
GGGCTCAGGTGAGAGAGAGAGGGGGGGGGGGGCGGAGGCGAGCCTGCAGT
AAGTCCGGTTTTGCGAACAGGCGGGCAGAATCTGAGAGAGGGATGGCGCT
TTTTGTTGGTGGTTGCACAATATTTCTCTGGGAAATATCTGGTAAAAAAT
TGAAATCGCTAACTTAAAGGCAGTGCAAGATAGCAAGCTCGAGCTTGACT
GCTCCTCTCGCGTACGCTGGAGGTTAGCTGATGCACGACCTTCTTTATGA
GAACGGGCTTTGAAAGTCGGTCTAGGGGGGGGTGTCATATTCCCTCCCCC
TCTTGCGGTAGTTGGCGTGTGTCATGGCGTCTTGTCCCGTCCGTTGGACC
TAAGTGGATGTTACTGTAGAAAGTACTGAGCAGAGACCGGAACGCGTTTG
CAACTCCAAGACAAAAACTACAACGTGAACTAAAAACAACAACAACAACA
ACAACAACGTTTGTCCTCCCTGACGAACCACAGGAGGAGAAGATGGAGAA
GGACGCGGCGGAGATGAAGGCGAGGATAGAGGAGGAGTACCGAGTCAAGG
CGGAGACCGAGGCGCGGGCGAAGATCGAGGCGGAGATGGCGGCCGAAAGA
GCGGAGGCCGAGAGCAAAAAGGCAGCCACCGCCGCTGCTGCCAACGGGGG
CACGGCAGCCGGGACCGCGAACGGGGGGGTGGGGGCCGGGTCGAGTCACA
GCAATGCGAGGGGGGGGCTGCGTCTCGCCAGCCCCGGAGGATCGAGCGAC
GGGACCGAGATGAACTCCCTCTCGGCGCGGTCGAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12726:871..4956-

>mRNA_Ecto-sp13_S_contig12726.2256.1 ID=mRNA_Ecto-sp13_S_contig12726.2256.1|Name=mRNA_Ecto-sp13_S_contig12726.2256.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1236bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12726:871..4956- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGCACCTGGAGTTCGTAAATAGATACGGTCTTCTCGCCGTGAACAT
CCTCCAGGAGGCGTGGGCGGAGGCGAAGAAGGAGTTCCCTGATATCGTTA
GAGAACAAGAGAGGGCCGTCGCCAGGGAGATTTTGTTCGAGGTGGTGCCG
ATGCTGAGCAAGAACTCGGTGTCGAAGAAGGACATGACCAAGTCCAAGAA
CACGCCTGGGGTGAGGCTCGCCGGCAAGCTGTCGGGGGTGGCCCAACAGG
CTAGCTTCCGAGACCTGTGCGGGCAGGGTGGGGTACAGATCGGGAACACT
AAGGTGTTCTTCCGACAGATGGCTTTCAACCGCGCGGAGAAGGCGAGGAC
TTTGAGGCTCTCGGAAGCGTGCGTGACGATACAGACGGCCTTCCGGCGAC
ACATGATCGAGCAAGACTACAAGACGATGAGAAAGGGGACGGTGGCCTTG
CAGGCCCAGGTGCGGGGCCACCAGGCGAGACTAAAGGTGCTGGCGCTTCG
CTACCTCAACGCCTGCCTCATGGCTCAGAGGATCGTAAGGGGCTTCGTCA
AGCGAACTCAGTACAAGCGAACCAAGGATGCGGCGTTGAAGGTGCAGTCA
TGGGGGAGGATGTCGGCGGTTCGGAGAAGCTACCAGGAGGACCGGTCGAG
GGCGATTACGGTGCAGTGCCTGGCGAGGACGAGGTCGGCCAAATCAGAGC
TGCGGAAACGTAAAAAGGAGAAGGAGAACGTGGATGCCTTGCAGGCCAAG
ATCAAGGCCTACGAGCAAGCGGCGAAGGCGAGGGAGGCGGAGTTACGGCG
GGAGCAGGAGGCGGCTATCGCTCGGATCAAGGCGGAAGCGGAGGCGACGG
CCAGGGCGGAGATGCGGGAAAAGGCGCGGCTGGAGGAGGAGCGGAGGGTA
CGAGAAGAGCACGAGGCGAAAGTCAGGGCTCAGGAGGAGAAGATGGAGAA
GGACGCGGCGGAGATGAAGGCGAGGATAGAGGAGGAGTACCGAGTCAAGG
CGGAGACCGAGGCGCGGGCGAAGATCGAGGCGGAGATGGCGGCCGAAAGA
GCGGAGGCCGAGAGCAAAAAGGCAGCCACCGCCGCTGCTGCCAACGGGGG
CACGGCAGCCGGGACCGCGAACGGGGGGGTGGGGGCCGGGTCGAGTCACA
GCAATGCGAGGGGGGGGCTGCGTCTCGCCAGCCCCGGAGGATCGAGCGAC
GGGACCGAGATGAACTCCCTCTCGGCGCGGTCGAGC
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