mRNA_Ecto-sp13_S_contig12720.2253.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12720.2253.1 vs. uniprot
Match: A0A6H5JXU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU8_9PHAE) HSP 1 Score: 304 bits (778), Expect = 3.940e-103 Identity = 140/176 (79.55%), Postives = 154/176 (87.50%), Query Frame = 1
Query: 28 MASWYTPERYGDWPGSSPPERNTDIPDTLLGQHVFLGGLGVKTHVHVAVVQAGLRGYDTTL*WT*ILVLPRRREEDPLPFLMRWEFCPTLVTPGLVAKPSLAVWHETAPCFLYGVVTTVTKIAIHGRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKLPGVQPVKRGIMLFNACCR 555
M+SWYTP+RYGDWPGSSPPERNTD+ D LL QHVFL GLG+KTHVHVAVV+AGLRG D T + P++ E DPLP L+RWEFCPT TPG+V++P+LAVWHETAPCFL GV+TTVTKIAI GRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKLPGVQPVKR IMLFNACCR
Sbjct: 1 MSSWYTPDRYGDWPGSSPPERNTDLRDLLLWQHVFLAGLGMKTHVHVAVVEAGLRGCDETCMMDVVFGTPKK-EGDPLPILLRWEFCPTQNTPGVVSEPTLAVWHETAPCFLDGVMTTVTKIAIRGRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKLPGVQPVKRRIMLFNACCR 175
BLAST of mRNA_Ecto-sp13_S_contig12720.2253.1 vs. uniprot
Match: D7G025_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G025_ECTSI) HSP 1 Score: 287 bits (734), Expect = 6.360e-97 Identity = 136/175 (77.71%), Postives = 146/175 (83.43%), Query Frame = 1
Query: 28 MASWYTPERYGDWPGSSPPERNTDIPDTLLGQHVFLGGLGVKTHVHVAVVQAGLRGYDTTL*WT*ILVLPRRREEDPLPFLMRWEFCPTLVTPGLVAKPSLAVWHETAPCFLYGVVTTVTKIAIHGRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKLPGVQPVKRGIMLFNACC 552
M+SWYTPERY DWPGSSPPERNT + + LL QHVFLGGLG+KTHVHVAVVQAGLRG DTT +V ++ PLP LMRW+FCPTL+TPGLVAKPSLAVWHETAPCFL GVVTTVTKIAIHGRIPLEWAWPNPR LPTARRP HLQWAIK P VQPVKR +MLFNA C
Sbjct: 1 MSSWYTPERYADWPGSSPPERNTAMREALLWQHVFLGGLGMKTHVHVAVVQAGLRGCDTTFMMD--VVFGTAKKGKPLPILMRWDFCPTLITPGLVAKPSLAVWHETAPCFLTGVVTTVTKIAIHGRIPLEWAWPNPRTLTLPTARRPRTHLQWAIKSPRVQPVKRRMMLFNAWC 173
BLAST of mRNA_Ecto-sp13_S_contig12720.2253.1 vs. uniprot
Match: A0A6H5KM83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM83_9PHAE) HSP 1 Score: 215 bits (548), Expect = 1.000e-68 Identity = 96/105 (91.43%), Postives = 101/105 (96.19%), Query Frame = 1
Query: 241 RREEDPLPFLMRWEFCPTLVTPGLVAKPSLAVWHETAPCFLYGVVTTVTKIAIHGRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKLPGVQPVKRGIMLFNACCR 555
++E DPLP LMRWE CPTL+TPGLVAKPSLAVWHETAPCFL GVVTTVTKIAIHGRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKLPGVQPV+RGI+LFNACCR
Sbjct: 10 KKEGDPLPILMRWEICPTLITPGLVAKPSLAVWHETAPCFLDGVVTTVTKIAIHGRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKLPGVQPVERGIILFNACCR 114
BLAST of mRNA_Ecto-sp13_S_contig12720.2253.1 vs. uniprot
Match: A0A6H5L242_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L242_9PHAE) HSP 1 Score: 198 bits (503), Expect = 5.720e-62 Identity = 104/177 (58.76%), Postives = 119/177 (67.23%), Query Frame = 1
Query: 28 MASWYTPERYGDWPGSSPPERNTDIPDTLLGQHVFLGGLGVKTHVHVAVVQAGLRGYDTTL*WT*ILVLPRRREEDPLPFLMRWEFCPTLVTPGLVAKPSLAVWHETAPCFLYGVVTTVTKIAIHGRIPLEWAW-PNPRAGRLPTARRPLPHLQWAIKLPGVQPVKRGIMLFNACCR 555
M+SWYTPERY D PGSS E NT I + LL QHVFLGGLG T V +V + T ++ +PLP L+RW+FCPTL+ PGLVAKPSLAVWHETAPCFL G+V+TVTKIAIHGR PL+ P G + P+LQ AIKLPGVQPVKR IMLFNACCR
Sbjct: 1 MSSWYTPERYADGPGSSSSEYNTAIREALLWQHVFLGGLGCGTTFMVDIV------FGTA------------KKGEPLPILLRWDFCPTLIAPGLVAKPSLAVWHETAPCFLDGIVSTVTKIAIHGRNPLDRVGLAKPSGGATTHSTTAPPNLQCAIKLPGVQPVKRRIMLFNACCR 159
BLAST of mRNA_Ecto-sp13_S_contig12720.2253.1 vs. uniprot
Match: D7FPI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI1_ECTSI) HSP 1 Score: 85.9 bits (211), Expect = 8.740e-19 Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 2
Query: 2 AETRVCCRRWLLGTLRKGMVTGRDPRLPSAIQIYRTLFLGSTYFWGDWV 148
AETRVC RR LLGTLRKGM+TGRDPRLPSAIQ+ F GSTYFWGDWV
Sbjct: 37 AETRVCVRRCLLGTLRKGMLTGRDPRLPSAIQLCGKHFFGSTYFWGDWV 85 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12720.2253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12720.2253.1 >prot_Ecto-sp13_S_contig12720.2253.1 ID=prot_Ecto-sp13_S_contig12720.2253.1|Name=mRNA_Ecto-sp13_S_contig12720.2253.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=96bp MRWEFCPTLVTPGLVAKPSLAVWHETAPCFLYGVVTTVTKIAIHGRIPLEback to top mRNA from alignment at Ecto-sp13_S_contig12720:574..1131+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12720.2253.1 ID=mRNA_Ecto-sp13_S_contig12720.2253.1|Name=mRNA_Ecto-sp13_S_contig12720.2253.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=558bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12720:574..1131+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12720:574..1131+ >mRNA_Ecto-sp13_S_contig12720.2253.1 ID=mRNA_Ecto-sp13_S_contig12720.2253.1|Name=mRNA_Ecto-sp13_S_contig12720.2253.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12720:574..1131+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |