mRNA_Ecto-sp13_S_contig12713.2250.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12713.2250.1
Unique NamemRNA_Ecto-sp13_S_contig12713.2250.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12713.2250.1 vs. uniprot
Match: D8LKV1_ECTSI (Coiled-coil domain-containing protein 94 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKV1_ECTSI)

HSP 1 Score: 254 bits (649), Expect = 1.520e-81
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1
Query:    1 MSTLAAARADNMYYPPEWRPEYGGISKFQGSNGHNQYEKYGKIRFELPDHGWCLGCGRHIGRGTRFNATKDQAGTYYSTKIWQFSMKCPSCSNVMVIKTDPKNTGYEYVEGIRKK 345
            MSTLAAARADNMYYPPEWRPEYGGISKFQGSNGHNQYEKYGKIRFELPDHGWCLGCGRHIGRGTRFNATKDQAGTYYSTKIWQFSMKCPSCSNVMVIKTDPKNTGYEYVEGIRKK
Sbjct:    1 MSTLAAARADNMYYPPEWRPEYGGISKFQGSNGHNQYEKYGKIRFELPDHGWCLGCGRHIGRGTRFNATKDQAGTYYSTKIWQFSMKCPSCSNVMVIKTDPKNTGYEYVEGIRKK 115          
BLAST of mRNA_Ecto-sp13_S_contig12713.2250.1 vs. uniprot
Match: A0A482S855_9ARCH (DUF572 domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S855_9ARCH)

HSP 1 Score: 174 bits (442), Expect = 1.650e-53
Identity = 77/114 (67.54%), Postives = 92/114 (80.70%), Query Frame = 1
Query:    1 MSTLAAARADNMYYPPEWRPEYGGISKFQGSNGHNQYEKYGKIRFELPDHGWCLGCGRHIGRGTRFNATKDQAGTYYSTKIWQFSMKCPSCSNVMVIKTDPKNTGYEYVEGIRK 342
            MS+LAA+RADN YYPPEWRPE GGISKFQGS G NQYE+YG IRFELP   WCL C RH+G+G RFNA KD+AG Y+ST IW+F  KC SC    VI+T+P+++ Y+YVEG+RK
Sbjct:    1 MSSLAASRADNFYYPPEWRPEMGGISKFQGSKGKNQYEQYGIIRFELPFDAWCLKCKRHMGKGLRFNAKKDKAGKYFSTTIWEFKTKCYSCDQKFVIRTNPQDSTYDYVEGLRK 114          
BLAST of mRNA_Ecto-sp13_S_contig12713.2250.1 vs. uniprot
Match: A0A835Z9T3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9T3_9STRA)

HSP 1 Score: 166 bits (421), Expect = 3.530e-48
Identity = 71/115 (61.74%), Postives = 89/115 (77.39%), Query Frame = 1
Query:    1 MSTLAAARADNMYYPPEWRPEYGGISKFQGSNGHNQYEKYGKIRFELPDHGWCLGCGRHIGRGTRFNATKDQAGTYYSTKIWQFSMKCPSCSNVMVIKTDPKNTGYEYVEGIRKK 345
            MS+LAA +AD  YYPP W P++G +SK  GS G NQYE+YG IRFELP + WC GCGR +G+GTRFNA K++AG Y++T +W F M+CPSCS   VIKTDPKN+ YE+  GIR+K
Sbjct:    1 MSSLAAVQADGFYYPPTWEPKHGSVSKAAGSKGSNQYEQYGVIRFELPYNAWCEGCGRPLGKGTRFNAKKEKAGAYFTTTVWAFHMRCPSCSTEFVIKTDPKNSDYEFSAGIRRK 115          
BLAST of mRNA_Ecto-sp13_S_contig12713.2250.1 vs. uniprot
Match: A0A7S3H3M3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3M3_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.060e-47
Identity = 74/116 (63.79%), Postives = 88/116 (75.86%), Query Frame = 1
Query:    1 MSTLAAARADNMYYPPEWRPEYGGISKFQGSNGHNQYEKYGKIRFELPDHGWCLGCGRHIGRGTRFNATKDQAGTYYSTKIWQFSMKC--PSCSNVMVIKTDPKNTGYEYVEGIRK 342
            MS+LAAARADN Y+PPEW P+ GGISKFQGS G NQYE+ G IRFELP  GWCLGCG H+ +G RFNA K++ G Y++T+IW F MKC   SC+    I TDPKN  Y++ EGIRK
Sbjct:    1 MSSLAAARADNFYFPPEWTPQMGGISKFQGSKGANQYEQKGIIRFELPFDGWCLGCGVHMTKGLRFNAKKEKEGKYFTTQIWSFHMKCFSTSCTQKYKILTDPKNCTYDFAEGIRK 116          
BLAST of mRNA_Ecto-sp13_S_contig12713.2250.1 vs. uniprot
Match: A0A7S2WQQ1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WQQ1_9STRA)

HSP 1 Score: 159 bits (402), Expect = 5.330e-45
Identity = 72/115 (62.61%), Postives = 88/115 (76.52%), Query Frame = 1
Query:    1 MSTLAAARADNMYYPPEWRPEYGGISKFQGSNGHNQYEKYGKIRFELPDHGWCLGCGRHIGRGTRFNATKDQAGTYYSTKIWQFSMKCPSCSNVMVIKTDPKNTGYEYVEGIRKK 345
            MS+LAAARAD  Y+PP+W P      KFQGS G NQYEKYG IRFELP  GWC GC RH G+GTRFNA K++ G Y+ T+I++F+MKC SCS+ +VI TDPKNT Y++  GI+KK
Sbjct:    1 MSSLAAARADGFYHPPDWDPNKTSRKKFQGSRGANQYEKYGVIRFELPYDGWCEGCERHYGKGTRFNAKKEKDGMYFRTQIFKFTMKCHSCSHELVIATDPKNTDYDFRSGIKKK 115          
BLAST of mRNA_Ecto-sp13_S_contig12713.2250.1 vs. uniprot
Match: W7TDI8_9STRA (Coiled-coil domain-containing protein 130 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TDI8_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.210e-43
Identity = 71/115 (61.74%), Postives = 86/115 (74.78%), Query Frame = 1
Query:    1 MSTLAAARADNMYYPPEWRPEYGGISKFQGSNGHNQYEKYGKIRFELPDHGWCLGCGRHIGRGTRFNATKDQAGTYYSTKIWQFSMKCPSCSNVMVIKTDPKNTGYEYVEGIRKK 345
            MS+LAAA+AD  Y PP+W  +   + K  GS GHNQY + G IRFELP + WCL C RHIG+G RFNA K QAG Y+STKIW+F MKC SC N +VI+TDPKN  YE+VEGIR++
Sbjct:    1 MSSLAAAQADGYYRPPDWDGK-SSLKKITGSKGHNQYTQSGIIRFELPYNSWCLKCDRHIGKGVRFNAKKIQAGNYFSTKIWEFHMKCASCKNRLVIRTDPKNCDYEFVEGIRRR 114          
BLAST of mRNA_Ecto-sp13_S_contig12713.2250.1 vs. uniprot
Match: A0A7S3PEB4_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PEB4_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.510e-42
Identity = 65/115 (56.52%), Postives = 89/115 (77.39%), Query Frame = 1
Query:    1 MSTLAAARADNMYYPPEWRPE-YGGISKFQGSNGHNQYEKYGKIRFELPDHGWCLGCGRHIGRGTRFNATKDQAGTYYSTKIWQFSMKCPSCSNVMVIKTDPKNTGYEYVEGIRK 342
            MS+LAAA+AD  Y+PPE+ P  +GG+SK+ GS G NQ+EK G +RFELP + WCLGC R IG+GTR+NA K++AG Y++T+IW+F  KC +C    VI+TDPKN  YE+V G+++
Sbjct:    1 MSSLAAAQADGFYHPPEYDPRRHGGLSKYNGSTGSNQWEKRGIVRFELPYNAWCLGCKRAIGQGTRYNAKKEKAGKYFTTQIWEFHTKCATCPQKFVIRTDPKNADYEFVSGLKR 115          
BLAST of mRNA_Ecto-sp13_S_contig12713.2250.1 vs. uniprot
Match: X6LQ05_RETFI (Uncharacterized protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6LQ05_RETFI)

HSP 1 Score: 147 bits (370), Expect = 3.440e-42
Identity = 67/115 (58.26%), Postives = 84/115 (73.04%), Query Frame = 1
Query:    1 MSTLAAARADNMYYPPEWRPEYGGISKFQGSNGHNQYEKYGKIRFELPDHGWCLGCGRHIGRGTRFNATKDQAGTYYSTKIWQFSMKCPSCSNVMVIKTDPKNTGYEYVEGIRKK 345
            MS+LAAARADN Y PP+W P      KFQGS GHNQYE+ G IRFE+P   +CL C +HI +G RFNA KD  G Y+STK+W+FSM+C SC N++ I+TDP+   Y+ VEG +KK
Sbjct:    1 MSSLAAARADNFYNPPDWDPNQISRDKFQGSKGHNQYEQKGLIRFEMPFPIFCLKCDKHIDKGVRFNAKKDHIGHYFSTKLWEFSMRCYSCGNMIKIQTDPEACDYKVVEGAKKK 115          
BLAST of mRNA_Ecto-sp13_S_contig12713.2250.1 vs. uniprot
Match: F0YIK6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIK6_AURAN)

HSP 1 Score: 154 bits (390), Expect = 2.620e-41
Identity = 68/116 (58.62%), Postives = 85/116 (73.28%), Query Frame = 1
Query:    1 MSTLAAARADNMYYPPEWRPEYGGISKFQG-SNGHNQYEKYGKIRFELPDHGWCLGCGRHIGRGTRFNATKDQAGTYYSTKIWQFSMKCPSCSNVMVIKTDPKNTGYEYVEGIRKK 345
            MSTL+AARADN YYPP W P    +S+  G + G NQYE+ G IRFELP  GWC GCGRH+G+G RFNA KD  G Y+ST +W+F+M+CPSC+   VIKTDP  + Y++  GIR+K
Sbjct:    1 MSTLSAARADNFYYPPNWDPSKESLSQHTGDTRGRNQYEQEGLIRFELPFDGWCEGCGRHVGKGVRFNAKKDADGKYHSTTVWKFTMQCPSCTTKFVIKTDPAKSDYDFASGIRRK 116          
BLAST of mRNA_Ecto-sp13_S_contig12713.2250.1 vs. uniprot
Match: X6PCF0_RETFI (Uncharacterized protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6PCF0_RETFI)

HSP 1 Score: 147 bits (370), Expect = 4.510e-40
Identity = 67/115 (58.26%), Postives = 84/115 (73.04%), Query Frame = 1
Query:    1 MSTLAAARADNMYYPPEWRPEYGGISKFQGSNGHNQYEKYGKIRFELPDHGWCLGCGRHIGRGTRFNATKDQAGTYYSTKIWQFSMKCPSCSNVMVIKTDPKNTGYEYVEGIRKK 345
            MS+LAAARADN Y PP+W P      KFQGS GHNQYE+ G IRFE+P   +CL C +HI +G RFNA KD  G Y+STK+W+FSM+C SC N++ I+TDP+   Y+ VEG +KK
Sbjct:    1 MSSLAAARADNFYNPPDWDPNQISRDKFQGSKGHNQYEQKGLIRFEMPFPIFCLKCDKHIDKGVRFNAKKDHIGHYFSTKLWEFSMRCYSCGNMIKIQTDPEACDYKVVEGAKKK 115          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12713.2250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKV1_ECTSI1.520e-81100.00Coiled-coil domain-containing protein 94 n=2 Tax=E... [more]
A0A482S855_9ARCH1.650e-5367.54DUF572 domain-containing protein (Fragment) n=1 Ta... [more]
A0A835Z9T3_9STRA3.530e-4861.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3H3M3_9STRA1.060e-4763.79Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2WQQ1_9STRA5.330e-4562.61Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7TDI8_9STRA1.210e-4361.74Coiled-coil domain-containing protein 130 n=2 Tax=... [more]
A0A7S3PEB4_9STRA1.510e-4256.52Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
X6LQ05_RETFI3.440e-4258.26Uncharacterized protein n=1 Tax=Reticulomyxa filos... [more]
F0YIK6_AURAN2.620e-4158.62Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
X6PCF0_RETFI4.510e-4058.26Uncharacterized protein n=1 Tax=Reticulomyxa filos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12713contigEcto-sp13_S_contig12713:1878..3042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score256.1
Seed ortholog evalue7.6e-66
Seed eggNOG ortholog2880.D8LKV1
Model size345
KEGG koko:K13115
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.response to virus
EggNOG OGsCOG5134@1,KOG2990@2759
Cds size345
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462679.770779-CDS-Ecto-sp13_S_contig12713:1877..20631681462679.770779-CDS-Ecto-sp13_S_contig12713:1877..2063Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12713 1878..2063 +
1681462679.7831721-CDS-Ecto-sp13_S_contig12713:2883..30421681462679.7831721-CDS-Ecto-sp13_S_contig12713:2883..3042Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12713 2884..3042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12713.2250.1prot_Ecto-sp13_S_contig12713.2250.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12713 1878..3042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12713.2250.1

>prot_Ecto-sp13_S_contig12713.2250.1 ID=prot_Ecto-sp13_S_contig12713.2250.1|Name=mRNA_Ecto-sp13_S_contig12713.2250.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=115bp
MSTLAAARADNMYYPPEWRPEYGGISKFQGSNGHNQYEKYGKIRFELPDH
GWCLGCGRHIGRGTRFNATKDQAGTYYSTKIWQFSMKCPSCSNVMVIKTD
PKNTGYEYVEGIRKK
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mRNA from alignment at Ecto-sp13_S_contig12713:1878..3042+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12713.2250.1 ID=mRNA_Ecto-sp13_S_contig12713.2250.1|Name=mRNA_Ecto-sp13_S_contig12713.2250.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12713:1878..3042+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGACACTCGCCGCCGCTCGTGCGGACAACATGTACTACCCCCCGGA GTGGAGGCCGGAGTATGGGGGCATCTCCAAGTTCCAGGGCTCGAACGGCC ACAACCAGTACGAGAAGTACGGCAAGATAAGGTTCGAGTTGCCGGATCAC GGATGGTGCCTCGGCTGTGGGCGGCACATCGGCAGGGTGAGGGCTGAAAT CGGTTTTTATTTTGGCTCCTCCTACTACTGCTGTGTTACCTGCTTCTGTC GTGCAGCTTTCAGTATTCGAGAAGGAAAGAGGGCGAAGGACGAGACAGCC CTGTGTTGTACACGCTTTGTTTTGGGCGAACGAGCTGTGATTTCAGCTTA TGCCCCTGCTGCTGGGGACGTATCGACTCGTCTCTCGTCAGTCCTCCTTG TGTTGTAACACTGGCATTGCCGCCAACAATAAGATACATGTGGAAAACAA CTCAAAAGCATTGCTTCTTGTTTTTCATCTGAAATATATTCGCAGTGTAG CATCTATTTAGAGCGTACTGGTATTAAACAGCTGTACACGCAGTAACGCG TCGGCGTGGCCTACCGCAGGACCTGTTGGTCTGCGAACGGATGCACTTGG AAGTATCGATGAGTACGTGGTTCTAGATGAGACGTATTGTAAGAGTACTG TTAGGACATGCTCGACAAAGGGCGCAGCTGGTTTTGATGGGAAGAAAACC GCAGACGCTGTGCTAAGAAACGCTCACAATACTTTCGTAGCTCTCCCCTC GTCGAGCTTGACAGACGTGTCCTGCGATTTTCGTTGAATCGGCTGTCCGC TCATTACCCTCAAGACCCACCAGTCTGAAAAGATGAGCTCTGTGAACCAT GCGCTAGCCTCCCCTACATCTGATACCAGATCGAACGGGTGTAGGTAAGC ACACAACGTTCCCCCCCTCCCACACGCCCATGGTTTGTCCCTCGGAACCT CAATGCCCCTTGCTTGAACGAAAAAATGCGCCACTCGCTGCCCGCACACC GTACAGGGAACACGGTTCAACGCGACCAAGGACCAGGCGGGCACCTACTA CAGCACCAAGATCTGGCAGTTCTCCATGAAGTGCCCCTCGTGCAGCAACG TGATGGTCATTAAGACCGACCCCAAGAACACCGGCTACGAGTACGTGGAG GGCATCCGCAAGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12713:1878..3042+

>mRNA_Ecto-sp13_S_contig12713.2250.1 ID=mRNA_Ecto-sp13_S_contig12713.2250.1|Name=mRNA_Ecto-sp13_S_contig12713.2250.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12713:1878..3042+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGACACTCGCCGCCGCTCGTGCGGACAACATGTACTACCCCCCGGA
GTGGAGGCCGGAGTATGGGGGCATCTCCAAGTTCCAGGGCTCGAACGGCC
ACAACCAGTACGAGAAGTACGGCAAGATAAGGTTCGAGTTGCCGGATCAC
GGATGGTGCCTCGGCTGTGGGCGGCACATCGGCAGGGGAACACGGTTCAA
CGCGACCAAGGACCAGGCGGGCACCTACTACAGCACCAAGATCTGGCAGT
TCTCCATGAAGTGCCCCTCGTGCAGCAACGTGATGGTCATTAAGACCGAC
CCCAAGAACACCGGCTACGAGTACGTGGAGGGCATCCGCAAGAAG
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