mRNA_Ecto-sp13_S_contig12710.2247.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12710.2247.1
Unique NamemRNA_Ecto-sp13_S_contig12710.2247.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12710.2247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12710contigEcto-sp13_S_contig12710:2152..2793 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size295
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-28_000130.1
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462679.495385-CDS-Ecto-sp13_S_contig12710:2151..22421681462679.495385-CDS-Ecto-sp13_S_contig12710:2151..2242Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12710 2152..2242 -
1681462679.5066206-CDS-Ecto-sp13_S_contig12710:2589..27681681462679.5066206-CDS-Ecto-sp13_S_contig12710:2589..2768Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12710 2590..2768 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462679.5143535-UTR-Ecto-sp13_S_contig12710:2768..27931681462679.5143535-UTR-Ecto-sp13_S_contig12710:2768..2793Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12710 2769..2793 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12710.2247.1prot_Ecto-sp13_S_contig12710.2247.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12710 2152..2768 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12710.2247.1

>prot_Ecto-sp13_S_contig12710.2247.1 ID=prot_Ecto-sp13_S_contig12710.2247.1|Name=mRNA_Ecto-sp13_S_contig12710.2247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
MEEQGRKARVAAARLEEVGAITGSAAFTPVAPSYDEESGSKSAAMVMNGM
MPLRCGVNGRASFPTVVFRDVRMTTGAGKNAQGASIRNLW
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mRNA from alignment at Ecto-sp13_S_contig12710:2152..2793-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12710.2247.1 ID=mRNA_Ecto-sp13_S_contig12710.2247.1|Name=mRNA_Ecto-sp13_S_contig12710.2247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=642bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12710:2152..2793- (Ectocarpus species13 EcNAP12_S_4_19m)
TGAGCCTTCCCCTCTCGAGACCGACATGGAAGAACAGGGTCGCAAGGCAC
GGGTGGCTGCGGCCAGGCTCGAGGAGGTGGGAGCAATAACAGGATCAGCG
GCATTCACACCGGTCGCCCCAAGCTACGACGAGGAATCGGGGAGTAAAAG
TGCAGCGATGGTGATGAACGGAATGATGCCGCTGCGATGTGGTGTCAATG
GAAGGCAAGCCTGAGTCCCGTAGTGCGTTCGTCCGTTCAGAGATTATTTA
CTGCATACGTGAGGTCAGTAGGGTCGTCAGATGAACGCGCTATTTACCGA
CTTAAACTGTTCATATATTGCAGCGCAGCGTTTCACTCTTGTCGGCGTCT
TGACCTCAAGAGTCGTCGTGTGTTATATCTGAACGAAACACGAGGCCTAT
ATTTACCCGACTCCGTAGAAGACAAGACCTCTGTCCCGATATCCCATGCA
GATACCGAACAACCAACAATCGGAAAGCGTGCACCTCGAGACTCGTCGAT
TCAAATGCTCCCACCTTCAATCGTGCGTGAAAATCGTACGTTCTACTCCA
GGGCATCTTTTCCAACGGTGGTGTTTCGAGACGTTCGAATGACGACGGGA
GCCGGGAAAAACGCGCAGGGGGCGTCCATCCGCAATCTGTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12710:2152..2793-

>mRNA_Ecto-sp13_S_contig12710.2247.1 ID=mRNA_Ecto-sp13_S_contig12710.2247.1|Name=mRNA_Ecto-sp13_S_contig12710.2247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12710:2152..2793- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGAACAGGGTCGCAAGGCACGGGTGGCTGCGGCCAGGCTCGAGGA
GGTGGGAGCAATAACAGGATCAGCGGCATTCACACCGGTCGCCCCAAGCT
ACGACGAGGAATCGGGGAGTAAAAGTGCAGCGATGGTGATGAACGGAATG
ATGCCGCTGCGATGTGGTGTCAATGGAAGGGCATCTTTTCCAACGGTGGT
GTTTCGAGACGTTCGAATGACGACGGGAGCCGGGAAAAACGCGCAGGGGG
CGTCCATCCGCAATCTGTGG
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