mRNA_Ecto-sp13_S_contig1271.2246.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1271.2246.1
Unique NamemRNA_Ecto-sp13_S_contig1271.2246.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1271.2246.1 vs. uniprot
Match: D8LR56_ECTSI (Phosphatidylinositol-4-phosphate 5-kinase, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR56_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.080e-5
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = -2 
Query:  518 MEYEAEFVDGVMVRHDADHLRLAALR 595
            MEYEAEFVDGVMVRHDA+HLRLAALR
Sbjct:  775 MEYEAEFVDGVMVRHDAEHLRLAALR 800
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1271.2246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LR56_ECTSI1.080e-596.15Phosphatidylinositol-4-phosphate 5-kinase, putativ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1271contigEcto-sp13_S_contig1271:13972..14567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size596
Hectar predicted targeting categoryother localisation
Exons1
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462679.2540216-CDS-Ecto-sp13_S_contig1271:13971..143011681462679.2540216-CDS-Ecto-sp13_S_contig1271:13971..14301Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1271 13972..14301 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462679.2706134-UTR-Ecto-sp13_S_contig1271:14301..145671681462679.2706134-UTR-Ecto-sp13_S_contig1271:14301..14567Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1271 14302..14567 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1271.2246.1prot_Ecto-sp13_S_contig1271.2246.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1271 13972..14301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1271.2246.1

>prot_Ecto-sp13_S_contig1271.2246.1 ID=prot_Ecto-sp13_S_contig1271.2246.1|Name=mRNA_Ecto-sp13_S_contig1271.2246.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
PAHTTQPFLLPSDPYSKCVSRSQHAAPRAVVIQPKPRNPHAWLGRCTKFR
RLLVASPHAWLLLPTATNTMLIWPWRTSKSFCSSHKRKNVGRIILAFALR
ALRTSSCWP*
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mRNA from alignment at Ecto-sp13_S_contig1271:13972..14567+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1271.2246.1 ID=mRNA_Ecto-sp13_S_contig1271.2246.1|Name=mRNA_Ecto-sp13_S_contig1271.2246.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=596bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1271:13972..14567+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGCACACACGACCCAGCCTTTCCTCCTCCCTTCTGATCCCTACAGCAA
GTGTGTGTCACGTAGCCAGCATGCTGCCCCGCGTGCCGTGGTCATCCAAC
CCAAACCTCGTAATCCACACGCATGGCTTGGACGTTGCACAAAGTTTCGT
CGCCTATTGGTGGCCAGCCCGCACGCGTGGTTACTGTTGCCTACAGCAAC
CAACACAATGCTGATTTGGCCGTGGCGCACAAGCAAGAGTTTTTGTTCGT
CTCACAAAAGAAAAAACGTGGGGAGGATCATTTTGGCGTTCGCACTCAGG
GCGTTGCGCACTTCTTCATGTTGGCCTTGATTTTTACCCGCTGGTAATGA
CGTTTTTACCAGCTAGTTGTCGCCGTCGATATGCGAAACACACACACACA
CACACGCACCTCCAGGGATCTTGGTAAAACCCAATGGCCCTGACGTCTCT
TCATCGGTCAGCCGGTTGGCGATGTCCACACCACTTGAAGAAACACACAC
ACAAAACACACAACACACCTGAGCGCCGCCAGCCGAAGGTGGTCGGCATC
ATGCCGCACCATAACGCCGTCCACGAACTCGGCCTCGTACTCCATA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1271:13972..14567+

>mRNA_Ecto-sp13_S_contig1271.2246.1 ID=mRNA_Ecto-sp13_S_contig1271.2246.1|Name=mRNA_Ecto-sp13_S_contig1271.2246.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1271:13972..14567+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGCACACACGACCCAGCCTTTCCTCCTCCCTTCTGATCCCTACAGCAA
GTGTGTGTCACGTAGCCAGCATGCTGCCCCGCGTGCCGTGGTCATCCAAC
CCAAACCTCGTAATCCACACGCATGGCTTGGACGTTGCACAAAGTTTCGT
CGCCTATTGGTGGCCAGCCCGCACGCGTGGTTACTGTTGCCTACAGCAAC
CAACACAATGCTGATTTGGCCGTGGCGCACAAGCAAGAGTTTTTGTTCGT
CTCACAAAAGAAAAAACGTGGGGAGGATCATTTTGGCGTTCGCACTCAGG
GCGTTGCGCACTTCTTCATGTTGGCCTTGA
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