mRNA_Ecto-sp13_S_contig12706.2239.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12706.2239.1
Unique NamemRNA_Ecto-sp13_S_contig12706.2239.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12706.2239.1 vs. uniprot
Match: D7G3M8_ECTSI (Similar to metal response element-binding transcription factor-1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3M8_ECTSI)

HSP 1 Score: 588 bits (1515), Expect = 1.440e-205
Identity = 333/372 (89.52%), Postives = 339/372 (91.13%), Query Frame = 1 
Query:  244 EAPAVQQQRRHPERVVSRWSAGAGSSNWGGGSAAGYECLICGKSFSKACKLARHAATHTGDKPFVCSEAGXXXXXXXXXXXXXXXXXXARRKAGLSTSVGDAARREAETRQRAAAFVAEAAAAGVSLEEPGAGGTAAPRRVLPLMKTTTAPLLEASRLERDRAVNGSGSGGGWAPGWKFTCGSCGRNFLDNYHLQRHIKAIHEAPRPYTCDHPVVVPPRTAPSAASAADSAAAAVSTASPGGSRARCERQAEEVVAEARGEANEGKDVARAKGSVGGVEAEGSATERGLQQXXXXXXXXXXXXRVLGVCGASFAKKWQLREHLFAEHGQSKFNSRQHRCSHAGCGRFFDRPSKLAAHEKTHKARFVCQFDGC 1359
            +APAVQQQRRH  RVVSR SAG GSS WGGGS AGYECLICGKSFSKACKLARHAATHTG+KPFVCSEAGXXXXXXXXXXXXXXXXXX RRKAGLSTSVGDAARREAETRQRAAAFVAEAAAAGVSLEEPGAGG  APRRVLPLMKTTTAPLLEASRLER+RAVNGSGSGGG A GWKFTCG+CGRNFLDNYHLQRHIKAIHEAPRPYTCDHPVVVPP TAPSAAS AD  AAA +TA PGGSRARCERQ EEVVAEARGEA EGKDV+RAKGSVGGVEAEG ATERGLQQ            RVLGVCGASFAKKWQLREHLFAEHGQSKFNSRQHRCSHAGCGR FDRPSKLAAHEKTHKARFVCQFDGC
Sbjct:   43 QAPAVQQQRRHQGRVVSRRSAGDGSS-WGGGSVAGYECLICGKSFSKACKLARHAATHTGEKPFVCSEAGXXXXXXXXXXXXXXXXXXXRRKAGLSTSVGDAARREAETRQRAAAFVAEAAAAGVSLEEPGAGGIGAPRRVLPLMKTTTAPLLEASRLERERAVNGSGSGGGGAQGWKFTCGNCGRNFLDNYHLQRHIKAIHEAPRPYTCDHPVVVPPPTAPSAASVADGTAAAFATAFPGGSRARCERQGEEVVAEARGEAKEGKDVSRAKGSVGGVEAEGGATERGLQQQPQQKQQ-----RVLGVCGASFAKKWQLREHLFAEHGQSKFNSRQHRCSHAGCGRSFDRPSKLAAHEKTHKARFVCQFDGC 408
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12706.2239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3M8_ECTSI1.440e-20589.52Similar to metal response element-binding transcri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12706contigEcto-sp13_S_contig12706:1..2591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1359
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionZinc finger C2H2-type/integrase DNA-binding domain
Ec32 orthologEc-24_001700.1
Cds size1359
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462678.866838-CDS-Ecto-sp13_S_contig12706:0..1241681462678.866838-CDS-Ecto-sp13_S_contig12706:0..124Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12706 1..124 -
1681462678.8754117-CDS-Ecto-sp13_S_contig12706:895..16781681462678.8754117-CDS-Ecto-sp13_S_contig12706:895..1678Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12706 896..1678 -
1681462678.884602-CDS-Ecto-sp13_S_contig12706:2139..25911681462678.884602-CDS-Ecto-sp13_S_contig12706:2139..2591Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12706 2140..2591 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12706.2239.1prot_Ecto-sp13_S_contig12706.2239.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12706 1..2591 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12706.2239.1

>prot_Ecto-sp13_S_contig12706.2239.1 ID=prot_Ecto-sp13_S_contig12706.2239.1|Name=mRNA_Ecto-sp13_S_contig12706.2239.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=453bp
MASVGLIQRVDPPHGRSCKRRRPYQDAGAARSAPATSRQRTTVACTLQQQ
DADAEKETDEASGDSDSGSEYQEDEDDEDVDEAPAVQQQRRHPERVVSRW
SAGAGSSNWGGGSAAGYECLICGKSFSKACKLARHAATHTGDKPFVCSEA
GCGKAFATKDKLERHTLSHARRKAGLSTSVGDAARREAETRQRAAAFVAE
AAAAGVSLEEPGAGGTAAPRRVLPLMKTTTAPLLEASRLERDRAVNGSGS
GGGWAPGWKFTCGSCGRNFLDNYHLQRHIKAIHEAPRPYTCDHPVVVPPR
TAPSAASAADSAAAAVSTASPGGSRARCERQAEEVVAEARGEANEGKDVA
RAKGSVGGVEAEGSATERGLQQQQQQKQQQQQQQRVLGVCGASFAKKWQL
REHLFAEHGQSKFNSRQHRCSHAGCGRFFDRPSKLAAHEKTHKARFVCQF
DGC
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mRNA from alignment at Ecto-sp13_S_contig12706:1..2591-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12706.2239.1 ID=mRNA_Ecto-sp13_S_contig12706.2239.1|Name=mRNA_Ecto-sp13_S_contig12706.2239.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2591bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12706:1..2591- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTTCGGTAGGACTTATTCAACGTGTGGATCCGCCTCATGGCAGGTC
TTGCAAGCGCCGCCGTCCCTACCAGGATGCGGGGGCGGCGAGGTCCGCCC
CGGCCACCTCGCGACAACGCACTACTGTTGCCTGTACGCTGCAGCAGCAG
GATGCAGATGCAGAGAAGGAGACAGACGAAGCAAGCGGTGACAGCGATAG
CGGCAGTGAGTACCAGGAAGACGAGGATGATGAGGATGTGGACGAGGCAC
CCGCAGTACAGCAACAGCGGCGCCATCCGGAACGAGTGGTGTCTCGATGG
TCTGCTGGCGCCGGCAGCAGCAACTGGGGAGGTGGCAGTGCTGCTGGATA
CGAATGCCTGATCTGCGGCAAGTCGTTTAGCAAGGCCTGCAAGCTGGCGC
GGCACGCCGCGACACACACAGGGGATAAACCATTCGTTTGTAGCGAGGCT
GGGTAAGTGAGGTTTGCCGTTTGTTTGGGATGTAGCTACAGCAGTCGTGC
AGCGTTTCTGTCAACTTTCGTAGCAAGCGAACGCTTAAATCAGCTTGGTA
CTCCGTCCATTACACGCAGCGGCCTCCAGGCGGCAGAATACCCCTCCGCC
CTCCAAACCCTCCATCAGCCTCCATCAGCACCAAACCAAACGCCAACACG
ACCATGTCTCGCGTATGCTACAGCGGTTGTGTACTTGTAGGAAAATGCTT
GGAACCCGAGGGTCGTAGAACGGAAATGCGGAGGAAATAAATTTATACGC
CCATTTTCCACTAAATCACGAAAGCAAGACACTGAGTAGCACAAGTGGAG
TCGAGGTTACGTCCTTTCTCTACTTGCCATTCACCCCTCCATCTGTGCCG
AGAGACCTCCCAAACACCCTCTCCTCCATCCTTTCTCTCTTACGACCCTG
GGGGGATTGTCAGCTGCGGCAAGGCGTTCGCGACCAAGGACAAGCTCGAG
CGACACACCCTCTCCCACGCCCGCCGGAAGGCCGGTCTCTCGACGTCCGT
GGGCGATGCCGCCCGCCGCGAAGCCGAAACCCGGCAACGCGCGGCCGCTT
TCGTCGCCGAGGCCGCAGCGGCGGGCGTCTCGCTCGAGGAGCCGGGGGCA
GGGGGAACAGCGGCGCCTCGGCGTGTGCTTCCCTTGATGAAGACGACCAC
GGCTCCGCTTTTGGAGGCGTCGAGGTTGGAGAGGGATCGGGCGGTAAATG
GCTCCGGCAGCGGAGGCGGCTGGGCTCCAGGGTGGAAGTTCACCTGCGGG
AGCTGCGGGAGGAATTTCTTGGACAACTACCACCTCCAGCGCCACATCAA
GGCCATCCACGAGGCCCCTCGTCCGTACACCTGCGACCATCCAGTGGTCG
TGCCGCCCCGAACAGCCCCTTCTGCCGCTAGCGCAGCCGACAGCGCTGCT
GCGGCCGTTTCCACCGCGTCTCCTGGCGGTTCGCGGGCGAGGTGTGAGCG
GCAGGCAGAGGAGGTTGTCGCTGAAGCGCGCGGGGAGGCGAATGAAGGGA
AGGATGTGGCAAGGGCGAAAGGGTCGGTAGGAGGAGTGGAGGCTGAAGGG
AGTGCCACAGAACGGGGGCTTCAGCAGCAGCAGCAGCAGAAGCAGCAGCA
GCAGCAGCAGCAACGAGTGTTGGGGGTGTGCGGCGCGTCGTTTGCGAAGA
AGTGGCAGCTGCGGGAACACCTTTTCGCGGAACACGGCCAATCCAAGTGA
GGGAGGCATCCATTGGGCGCCGTTATGGAGATCGAACTGTAGTCCACTCG
CGCACGTCTCGATCGTTTTTTGCAGCTTGTCCCAGAGTGTTGTTTTCCTT
GCGGGTACGGCACGTCGTGCCTTGGCTTCATTTTTGTGTTCGTTTTCTTC
TCGATGTTACGCTTGTGAAAAGAGGAAACAGTGTTGGTGTTTCGCCTTGC
GTGCGCGTTGTCGCTGTGCTGCATATTATACAGGGGGTTAGCGACACCTG
GTGTCACGACGAAATGTGGTCGCTATCCAGGCCAGTACGCTAAACCGAGC
GAACAACTATGTAGCAGTTTTACAACCGAGGAGCGGCGGTGCCACCGAAT
TTTGTGGTCGCTGAACAGCGCATGTCACTGAACGGGGAGTTGCTAAACCG
AGAGCCCCACTGTTTTTGCTCGTCGTCACGCGCCTTTGGTGCGCAATTCG
TCTTCGCGCCGACCAAGCCGATCATGGCAGCTAAACATTGTGCCCCTGAT
GTTTTTTGATGCTTGTGGTGGAAGTCTTTCGTAGTTTGTCGATCGTTTCT
CGAGTCCAGTTTGCTCCCAAGACGGGTTGGATCACCGCCCGCGGCGTCAC
CCTCTCTTCTTCGAGATCAGTGTTTTATCAACTGTCGGCTTTACGTCCAT
ATTGGTAAATAATTTTTTTGTGCTTCAAGAGGAATACTCAGTCCATGTAC
GATGAAGTCTGTTCCGAGAACAACGATGAGGCTCCTAACGCTCAAAGCCT
CGGGGGGGGTGGCGCAGGTTCAACAGCAGGCAGCACCGGTGCTCCCACGC
TGGGTGCGGGCGGTTCTTCGACCGGCCGAGCAAGCTGGCCGCCCACGAGA
AGACCCACAAGGCCCGCTTCGTGTGCCAGTTCGACGGCTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12706:1..2591-

>mRNA_Ecto-sp13_S_contig12706.2239.1 ID=mRNA_Ecto-sp13_S_contig12706.2239.1|Name=mRNA_Ecto-sp13_S_contig12706.2239.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1359bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12706:1..2591- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTTCGGTAGGACTTATTCAACGTGTGGATCCGCCTCATGGCAGGTC
TTGCAAGCGCCGCCGTCCCTACCAGGATGCGGGGGCGGCGAGGTCCGCCC
CGGCCACCTCGCGACAACGCACTACTGTTGCCTGTACGCTGCAGCAGCAG
GATGCAGATGCAGAGAAGGAGACAGACGAAGCAAGCGGTGACAGCGATAG
CGGCAGTGAGTACCAGGAAGACGAGGATGATGAGGATGTGGACGAGGCAC
CCGCAGTACAGCAACAGCGGCGCCATCCGGAACGAGTGGTGTCTCGATGG
TCTGCTGGCGCCGGCAGCAGCAACTGGGGAGGTGGCAGTGCTGCTGGATA
CGAATGCCTGATCTGCGGCAAGTCGTTTAGCAAGGCCTGCAAGCTGGCGC
GGCACGCCGCGACACACACAGGGGATAAACCATTCGTTTGTAGCGAGGCT
GGCTGCGGCAAGGCGTTCGCGACCAAGGACAAGCTCGAGCGACACACCCT
CTCCCACGCCCGCCGGAAGGCCGGTCTCTCGACGTCCGTGGGCGATGCCG
CCCGCCGCGAAGCCGAAACCCGGCAACGCGCGGCCGCTTTCGTCGCCGAG
GCCGCAGCGGCGGGCGTCTCGCTCGAGGAGCCGGGGGCAGGGGGAACAGC
GGCGCCTCGGCGTGTGCTTCCCTTGATGAAGACGACCACGGCTCCGCTTT
TGGAGGCGTCGAGGTTGGAGAGGGATCGGGCGGTAAATGGCTCCGGCAGC
GGAGGCGGCTGGGCTCCAGGGTGGAAGTTCACCTGCGGGAGCTGCGGGAG
GAATTTCTTGGACAACTACCACCTCCAGCGCCACATCAAGGCCATCCACG
AGGCCCCTCGTCCGTACACCTGCGACCATCCAGTGGTCGTGCCGCCCCGA
ACAGCCCCTTCTGCCGCTAGCGCAGCCGACAGCGCTGCTGCGGCCGTTTC
CACCGCGTCTCCTGGCGGTTCGCGGGCGAGGTGTGAGCGGCAGGCAGAGG
AGGTTGTCGCTGAAGCGCGCGGGGAGGCGAATGAAGGGAAGGATGTGGCA
AGGGCGAAAGGGTCGGTAGGAGGAGTGGAGGCTGAAGGGAGTGCCACAGA
ACGGGGGCTTCAGCAGCAGCAGCAGCAGAAGCAGCAGCAGCAGCAGCAGC
AACGAGTGTTGGGGGTGTGCGGCGCGTCGTTTGCGAAGAAGTGGCAGCTG
CGGGAACACCTTTTCGCGGAACACGGCCAATCCAAGTTCAACAGCAGGCA
GCACCGGTGCTCCCACGCTGGGTGCGGGCGGTTCTTCGACCGGCCGAGCA
AGCTGGCCGCCCACGAGAAGACCCACAAGGCCCGCTTCGTGTGCCAGTTC
GACGGCTGC
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