mRNA_Ecto-sp13_S_contig12703.2238.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12703.2238.1
Unique NamemRNA_Ecto-sp13_S_contig12703.2238.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12703.2238.1 vs. uniprot
Match: A0A6H5L5T7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5T7_9PHAE)

HSP 1 Score: 272 bits (696), Expect = 6.530e-91
Identity = 150/174 (86.21%), Postives = 158/174 (90.80%), Query Frame = 1 
Query:    1 MIRRFWRSSGLPLDHIFATAAGVYRRSRLRSALLSWHSVAKAETHRINHRIEAAEVIQRATRVF-ARRTAERRRRVRAPAVLAASRIIQAEFRSWKARTKTADVAVRQKKAQELRERYWRDETAKDEQRRRYASIVIQAAWRGVAGREIGLSRARQKLRGVLNELGGGRGRMHR 519
            MIRRFWRSSGLPLDHIFATAAGVYRRSRLR+AL +WHSVAKAETH IN+RIEAAEVIQRATRVF AR TAERRRRVR PAVLAASR+IQAEFRS KAR KTADVAVRQ+  QELR+RYW DETAKDEQRRR AS VIQAAWRG AGR  GL+RAR+ LRGVLNELGGGRGRMHR
Sbjct:   30 MIRRFWRSSGLPLDHIFATAAGVYRRSRLRTALSTWHSVAKAETHHINYRIEAAEVIQRATRVFIARHTAERRRRVRGPAVLAASRMIQAEFRSRKARVKTADVAVRQQNRQELRKRYWCDETAKDEQRRRDASTVIQAAWRGAAGRAAGLNRARRTLRGVLNELGGGRGRMHR 203
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12703.2238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L5T7_9PHAE6.530e-9186.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12703contigEcto-sp13_S_contig12703:3669..4492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size522
Hectar predicted targeting categorymitochondrion
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_003450.1
Cds size522
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462678.8146975-CDS-Ecto-sp13_S_contig12703:3668..41611681462678.8146975-CDS-Ecto-sp13_S_contig12703:3668..4161Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12703 3669..4161 -
1681462678.8356276-CDS-Ecto-sp13_S_contig12703:4463..44921681462678.8356276-CDS-Ecto-sp13_S_contig12703:4463..4492Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12703 4464..4492 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12703.2238.1prot_Ecto-sp13_S_contig12703.2238.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12703 3669..4492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12703.2238.1

>prot_Ecto-sp13_S_contig12703.2238.1 ID=prot_Ecto-sp13_S_contig12703.2238.1|Name=mRNA_Ecto-sp13_S_contig12703.2238.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=174bp
MIRRFWRSSGLPLDHIFATAAGVYRRSRLRSALLSWHSVAKAETHRINHR
IEAAEVIQRATRVFARRTAERRRRVRAPAVLAASRIIQAEFRSWKARTKT
ADVAVRQKKAQELRERYWRDETAKDEQRRRYASIVIQAAWRGVAGREIGL
SRARQKLRGVLNELGGGRGRMHR*
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mRNA from alignment at Ecto-sp13_S_contig12703:3669..4492-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12703.2238.1 ID=mRNA_Ecto-sp13_S_contig12703.2238.1|Name=mRNA_Ecto-sp13_S_contig12703.2238.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=824bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12703:3669..4492- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTCGCCGTTTCTGGCGTTCCTCCGGGTAAGGCTTGAGGTGAATATT
TTTGCTATGGTTCGGTCGCGGTAGCTGGAGAGGCTTCCGCCGGACTGATA
TGAATACCATGAAAACTACGGTCTTGTGGCCGATATGGTGCTATCCTGAA
ATGCAGGCACGCTCCAGGATTGGGGCTACTGTAACCCGAATTTCCATGTC
GTGCGAATGCTGCACTCCATCAGGAGTAAACACGTCCCTTGCTTTAGTGG
GAGGTTATCGCGTCTCCACCTCCTAGATAATCATGAAGCGCTCACACAAA
TGTCGTTGGAATGTTCTCACCGAACCTCCAGGCTTCCTTTGGATCACATA
TTTGCAACCGCTGCGGGCGTATACCGTCGATCGCGCCTCCGAAGTGCGCT
CTTAAGCTGGCATTCCGTGGCCAAGGCAGAAACCCATCGCATCAACCACA
GAATCGAGGCAGCAGAAGTCATTCAACGCGCTACACGAGTCTTCGCAAGA
CGTACAGCTGAGCGTCGCCGCCGCGTGCGTGCTCCGGCGGTGTTGGCAGC
CTCCCGCATCATTCAGGCCGAATTTCGCTCGTGGAAAGCCCGAACAAAGA
CTGCTGACGTAGCAGTTCGACAGAAAAAAGCACAAGAGCTTCGAGAACGA
TACTGGCGCGACGAGACTGCGAAAGACGAACAAAGGCGACGATATGCGTC
GATCGTGATACAAGCGGCGTGGAGGGGGGTTGCTGGGCGCGAAATAGGAT
TGAGTAGGGCACGACAAAAACTGAGGGGGGTGTTGAATGAGCTGGGTGGT
GGTCGGGGGCGCATGCACAGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12703:3669..4492-

>mRNA_Ecto-sp13_S_contig12703.2238.1 ID=mRNA_Ecto-sp13_S_contig12703.2238.1|Name=mRNA_Ecto-sp13_S_contig12703.2238.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=522bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12703:3669..4492- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTCGCCGTTTCTGGCGTTCCTCCGGGCTTCCTTTGGATCACATATT
TGCAACCGCTGCGGGCGTATACCGTCGATCGCGCCTCCGAAGTGCGCTCT
TAAGCTGGCATTCCGTGGCCAAGGCAGAAACCCATCGCATCAACCACAGA
ATCGAGGCAGCAGAAGTCATTCAACGCGCTACACGAGTCTTCGCAAGACG
TACAGCTGAGCGTCGCCGCCGCGTGCGTGCTCCGGCGGTGTTGGCAGCCT
CCCGCATCATTCAGGCCGAATTTCGCTCGTGGAAAGCCCGAACAAAGACT
GCTGACGTAGCAGTTCGACAGAAAAAAGCACAAGAGCTTCGAGAACGATA
CTGGCGCGACGAGACTGCGAAAGACGAACAAAGGCGACGATATGCGTCGA
TCGTGATACAAGCGGCGTGGAGGGGGGTTGCTGGGCGCGAAATAGGATTG
AGTAGGGCACGACAAAAACTGAGGGGGGTGTTGAATGAGCTGGGTGGTGG
TCGGGGGCGCATGCACAGGTAG
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