mRNA_Ecto-sp13_S_contig12701.2237.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12701.2237.1
Unique NamemRNA_Ecto-sp13_S_contig12701.2237.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12701.2237.1 vs. uniprot
Match: D8LKU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU7_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 3.440e-49
Identity = 89/129 (68.99%), Postives = 89/129 (68.99%), Query Frame = 1 
Query:    1 GSFIPNTFCRPLGRSQQKMFCGRFSTSGDVLLTASQDSVINLYDSES----------------------------------------PLKTIRCLDTAWSVISTDFSPDEKWLAYSSWSPYVHLCNTRG 267
            GSFIPNTFCRPLGRSQQKMFCGRFSTSGDVLLTASQDSVINLYDSES                                        PLKTIRCLDTAWSVISTDFSPDEKWLAYSSWSPYVHLCNTRG
Sbjct:  202 GSFIPNTFCRPLGRSQQKMFCGRFSTSGDVLLTASQDSVINLYDSESVYRWSAKSADPEENYRDEFPGFTRGMFRSSRRRLWHGAPKPLKTIRCLDTAWSVISTDFSPDEKWLAYSSWSPYVHLCNTRG 330
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BLAST of mRNA_Ecto-sp13_S_contig12701.2237.1 vs. uniprot
Match: A0A6H5K2A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A5_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 4.740e-49
Identity = 89/129 (68.99%), Postives = 89/129 (68.99%), Query Frame = 1 
Query:    1 GSFIPNTFCRPLGRSQQKMFCGRFSTSGDVLLTASQDSVINLYDSES----------------------------------------PLKTIRCLDTAWSVISTDFSPDEKWLAYSSWSPYVHLCNTRG 267
            GSFIPNTFCRPLGRSQQKMFCGRFSTSGDVLLTASQDSVINLYDSES                                        PLKTIRCLDTAWSVISTDFSPDEKWLAYSSWSPYVHLCNTRG
Sbjct:  266 GSFIPNTFCRPLGRSQQKMFCGRFSTSGDVLLTASQDSVINLYDSESVYRWSAKPADPEENYRDEFPDFTYHMFRSSRRRLWHGAPKPLKTIRCLDTAWSVISTDFSPDEKWLAYSSWSPYVHLCNTRG 394
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BLAST of mRNA_Ecto-sp13_S_contig12701.2237.1 vs. uniprot
Match: A0A2P6NAE7_9EUKA (WD repeat domain 23 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NAE7_9EUKA)

HSP 1 Score: 99.0 bits (245), Expect = 2.610e-22
Identity = 46/89 (51.69%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:    7 FIPNTFCRPLGRSQQKMFCGRFSTSGDVLLTASQDSVINLYDSESPLKT--IRCLDTAWSVISTDFSPDEKWLAYSSWSPYVHLCNTRG 267
            +IP  F R   R + ++FCGRFS SG V ++A QD VI +YD  S  KT  I+  +  WS+I TD+SPD++WL YSSWS Y+HLCN  G
Sbjct:  146 YIPQ-FSRNWDRYRNQIFCGRFSRSGQVFMSACQDRVIRIYDYHSGKKTKEIQARNIGWSIIDTDYSPDQRWLIYSSWSEYIHLCNITG 233
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BLAST of mRNA_Ecto-sp13_S_contig12701.2237.1 vs. uniprot
Match: UPI00077A1D94 (DDB1- and CUL4-associated factor 11-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A1D94)

HSP 1 Score: 97.4 bits (241), Expect = 1.030e-21
Identity = 45/91 (49.45%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:    7 FIPNTFCRPLGRSQQKMFCGRFSTSGDVLLTASQDSVINLYDSESP----LKTIRCLDTAWSVISTDFSPDEKWLAYSSWSPYVHLCNTRG 267
            F+PN       R  QK+FCGR+ST+GD+ L+A QD  I L+D+ +      + IR  D  WS+I TD+SPD+++L YSSWS YVHLCN  G
Sbjct:  152 FLPNMM-ETKARYHQKLFCGRYSTNGDIFLSACQDEHIRLFDTSNGQFKLFRDIRARDVGWSIIDTDYSPDQQYLIYSSWSNYVHLCNIYG 241
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BLAST of mRNA_Ecto-sp13_S_contig12701.2237.1 vs. uniprot
Match: A0A2P6NFA9_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NFA9_9EUKA)

HSP 1 Score: 95.9 bits (237), Expect = 2.140e-21
Identity = 37/76 (48.68%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:   46 QQKMFCGRFSTSGDVLLTASQDSVINLYDS--ESPLKTIRCLDTAWSVISTDFSPDEKWLAYSSWSPYVHLCNTRG 267
            + ++FCG++S  GD+ ++ASQD +I +YD+     +K I+  +  WS+I TD+SPD++WL YSSWSPY+HLCN +G
Sbjct:  101 RNRIFCGKYSKQGDMFMSASQDRMIRIYDTVTSEKVKVIQARNIGWSIIDTDYSPDKRWLIYSSWSPYIHLCNIQG 176
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BLAST of mRNA_Ecto-sp13_S_contig12701.2237.1 vs. uniprot
Match: A0A1X7VXM2_AMPQE (Uncharacterized protein n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VXM2_AMPQE)

HSP 1 Score: 92.4 bits (228), Expect = 6.390e-20
Identity = 41/91 (45.05%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:    7 FIPNTFCRPLGRSQQKMFCGRFSTSGDVLLTASQDSVINLYDSESP----LKTIRCLDTAWSVISTDFSPDEKWLAYSSWSPYVHLCNTRG 267
            F+P   C  +G  + ++FCG +S SGDV ++A Q   I+LYD+        K++   D  WSV+STDFSPD+ W  YS+WSP +HLCN  G
Sbjct:  203 FLPRHCCL-VGSYEARVFCGNYSKSGDVFISAGQSDKIDLYDTAGNKFKCYKSVGARDVGWSVLSTDFSPDQNWFIYSTWSPSIHLCNVYG 292
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BLAST of mRNA_Ecto-sp13_S_contig12701.2237.1 vs. uniprot
Match: K1QJD4_CRAGI (WD repeat-containing protein 23 n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1QJD4_CRAGI)

HSP 1 Score: 84.7 bits (208), Expect = 3.060e-17
Identity = 40/91 (43.96%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:    7 FIPNTFCRPLGRSQQKMFCGRFSTSGDVLLTASQDSVINLYDSESP----LKTIRCLDTAWSVISTDFSPDEKWLAYSSWSPYVHLCNTRG 267
            ++PN     +   + K FCG +S SG++ L+ASQD  I +Y++E      +K IR  D  WSV+ T FSPD  +L YSSWS  +HLCN  G
Sbjct:   85 YLPNQMS-VMANYRHKTFCGTYSKSGNIFLSASQDQNIRIYNTEDDNFDLIKRIRARDVGWSVLDTAFSPDGNYLIYSSWSDAIHLCNIHG 174
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BLAST of mRNA_Ecto-sp13_S_contig12701.2237.1 vs. uniprot
Match: UPI0009E59638 (DDB1- and CUL4-associated factor 11-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E59638)

HSP 1 Score: 84.0 bits (206), Expect = 6.040e-17
Identity = 40/92 (43.48%), Postives = 54/92 (58.70%), Query Frame = 1 
Query:    4 SFIPNTFCRPLGRSQQKMFCGRFSTSGDVLLTASQDSVINLYDSE----SPLKTIRCLDTAWSVISTDFSPDEKWLAYSSWSPYVHLCNTRG 267
            ++IPN       +   K+FCG +S  G V L+A QD  + LYD+        + I   D  WS+I TD+SPD+++L YSSWS YVHLCN  G
Sbjct:  161 NYIPNKM-ETKAQYHNKLFCGSYSRDGTVFLSACQDQRLRLYDTTLGQFKVFRNIVARDVEWSIIDTDYSPDQQYLIYSSWSDYVHLCNIYG 251
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BLAST of mRNA_Ecto-sp13_S_contig12701.2237.1 vs. uniprot
Match: A0A8J4V637_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V637_9MYCE)

HSP 1 Score: 84.0 bits (206), Expect = 6.170e-17
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:    7 FIPNTFCRPLG--RSQQKMFCGRFSTSGDVLLTASQDSVINLY--DSESPLKTIRCLDTAWSVISTDFSPDEKWLAYSSWSPYVHLCNTR 264
            F+P+   RPL       K+FC + S+ G + ++ASQD +I  +  DS    K+I   D  WS+I TD+SPD+ WL YSSWSPY+ LC  +
Sbjct:  251 FLPS---RPLNIINVHHKIFCCKMSSDGKIFMSASQDKMIRFFHTDSWQEFKSIEARDINWSIIDTDYSPDQNWLVYSSWSPYIQLCKIK 337
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BLAST of mRNA_Ecto-sp13_S_contig12701.2237.1 vs. uniprot
Match: UPI000719CD5B (DDB1- and CUL4-associated factor 11-like isoform X5 n=2 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719CD5B)

HSP 1 Score: 83.6 bits (205), Expect = 7.880e-17
Identity = 42/91 (46.15%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:    7 FIPNTFCRPLGRSQQKMFCGRFSTSGDVLLTASQDSVINLYDSES----PLKTIRCLDTAWSVISTDFSPDEKWLAYSSWSPYVHLCNTRG 267
            FIPN   R +     K FCG+FS SGDV +TA QD  I +YD+       LK +   D  WSV+ T FSPD  ++ YSSWS +VH+ N  G
Sbjct:   88 FIPNCMER-VASYHHKAFCGQFSQSGDVFITACQDQNIRIYDTTGNRFRQLKGVAARDVGWSVVDTAFSPDGNFVIYSSWSEFVHMVNVYG 177
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12701.2237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKU7_ECTSI3.440e-4968.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2A5_9PHAE4.740e-4968.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2P6NAE7_9EUKA2.610e-2251.69WD repeat domain 23 n=1 Tax=Planoprotostelium fung... [more]
UPI00077A1D941.030e-2149.45DDB1- and CUL4-associated factor 11-like n=1 Tax=A... [more]
A0A2P6NFA9_9EUKA2.140e-2148.68Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A1X7VXM2_AMPQE6.390e-2045.05Uncharacterized protein n=2 Tax=Amphimedon queensl... [more]
K1QJD4_CRAGI3.060e-1743.96WD repeat-containing protein 23 n=2 Tax=Crassostre... [more]
UPI0009E596386.040e-1743.48DDB1- and CUL4-associated factor 11-like n=1 Tax=O... [more]
A0A8J4V637_9MYCE6.170e-1743.33Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
UPI000719CD5B7.880e-1746.15DDB1- and CUL4-associated factor 11-like isoform X... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12701contigEcto-sp13_S_contig12701:3947..4761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score173.3
Seed ortholog evalue5e-41
Seed eggNOG ortholog2880.D8LKU7
Preferred nameDCAF11
Model size270
KEGG koko:K10770,ko:K11801
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000151,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0007568,GO:0008021,GO:0008134,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010259,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010941,GO:0010942,GO:0012505,GO:0016020,GO:0019219,GO:0019222,GO:0019538,GO:0019867,GO:0019941,GO:0030133,GO:0030163,GO:0030424,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031461,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0032501,GO:0032502,GO:0032991,GO:0036211,GO:0036477,GO:0040008,GO:0040014,GO:0040018,GO:0042995,GO:0043005,GO:0043025,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044449,GO:0044456,GO:0044464,GO:0045202,GO:0045892,GO:0045927,GO:0045934,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048638,GO:0048639,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051252,GO:0051253,GO:0051603,GO:0055120,GO:0060255,GO:0065007,GO:0070013,GO:0070382,GO:0071704,GO:0080008,GO:0080090,GO:0080134,GO:0080135,GO:0097458,GO:0097708,GO:0098588,GO:0098793,GO:0098805,GO:0099080,GO:0099081,GO:0099503,GO:0099512,GO:0120025,GO:1901214,GO:1901216,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1905802,GO:1905803,GO:1990234,GO:2000112,GO:2000113,GO:2001141
Exons2
EggNOG free text desc.WD repeat-containing protein
EggNOG OGsKOG0266@1,KOG0266@2759
EC2.1.1.229
Cds size270
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462678.7581394-CDS-Ecto-sp13_S_contig12701:3946..40871681462678.7581394-CDS-Ecto-sp13_S_contig12701:3946..4087Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12701 3947..4087 +
1681462678.7785602-CDS-Ecto-sp13_S_contig12701:4632..47611681462678.7785602-CDS-Ecto-sp13_S_contig12701:4632..4761Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12701 4633..4761 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12701.2237.1prot_Ecto-sp13_S_contig12701.2237.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12701 3947..4761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12701.2237.1

>prot_Ecto-sp13_S_contig12701.2237.1 ID=prot_Ecto-sp13_S_contig12701.2237.1|Name=mRNA_Ecto-sp13_S_contig12701.2237.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
GSFIPNTFCRPLGRSQQKMFCGRFSTSGDVLLTASQDSVINLYDSESPLK
TIRCLDTAWSVISTDFSPDEKWLAYSSWSPYVHLCNTRG*
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mRNA from alignment at Ecto-sp13_S_contig12701:3947..4761+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12701.2237.1 ID=mRNA_Ecto-sp13_S_contig12701.2237.1|Name=mRNA_Ecto-sp13_S_contig12701.2237.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=815bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12701:3947..4761+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAGTTTCATCCCCAACACGTTCTGCCGCCCCCTGGGCCGGTCCCAGCA
GAAGATGTTCTGCGGTCGGTTCTCCACTTCGGGCGACGTCCTTCTCACGG
CAAGCCAGGACTCGGTCATCAACCTCTACGATTCCGAGAGCGTTTATCGC
TGGAGCGCCAAGGCTACAGGTGAAGAAGCCGCGGTATAGTCGCATCCCCC
CCCCCTTTTTATTGTCACACGTCGCCCCCCCCCCCCCCTATCCTCCTGTT
GTTTCCCTTCTTACGGCACAACATTTTCATACGCTCCTCCACAGATGAGA
GTTTAGGGCAGATTAGCACAGCGTCTGTGGAAGCTATCTGATCTGTACGA
GACTCGTGGTGGTGTCGATAAGTCGAGGGGCTTCGTCTACCCAGTGCTTG
TGGTTGGCATTCTTTCGTCGTGTGTGCTACATAACCGGTCACTAAACTCA
ACGAACTCCCCACGTTCCACCATCAACCCCGCTTACTCCTATTGTCCAGA
CAGCGTTGTATGACACGGCCAACATGCGGCGCAACTGTAGCTAATTATCC
GATTATCTCCCCCGTCCTCACGCCTTTTACCGGAACACGGTTAGACCCTG
AAGAGAACTATCGCGACGAGTTCCCGGACTTCACCTACCACATGTTCCGT
TCCAGCCGGCGGAGGCTGTGGCACGGTGCCCCCAAGCCGCTCAAGACCAT
CAGGTGCCTCGACACGGCGTGGAGCGTGATCTCGACCGACTTCTCACCCG
ACGAGAAGTGGCTGGCGTACTCGAGCTGGTCCCCGTACGTCCATCTATGC
AACACTAGGGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12701:3947..4761+

>mRNA_Ecto-sp13_S_contig12701.2237.1 ID=mRNA_Ecto-sp13_S_contig12701.2237.1|Name=mRNA_Ecto-sp13_S_contig12701.2237.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12701:3947..4761+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAGTTTCATCCCCAACACGTTCTGCCGCCCCCTGGGCCGGTCCCAGCA
GAAGATGTTCTGCGGTCGGTTCTCCACTTCGGGCGACGTCCTTCTCACGG
CAAGCCAGGACTCGGTCATCAACCTCTACGATTCCGAGAGCCCGCTCAAG
ACCATCAGGTGCCTCGACACGGCGTGGAGCGTGATCTCGACCGACTTCTC
ACCCGACGAGAAGTGGCTGGCGTACTCGAGCTGGTCCCCGTACGTCCATC
TATGCAACACTAGGGGGTGA
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