mRNA_Ecto-sp13_S_contig12701.2236.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig12701.2236.1
Unique Name	mRNA_Ecto-sp13_S_contig12701.2236.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig12701.2236.1 vs. uniprot
Match: A0A6H5K2A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A5_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 2.070e-27
Identity = 99/118 (83.90%), Postives = 103/118 (87.29%), Query Frame = 1

Query:  109 MDMALMDQLIREHTYGGLFFSGADERESDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSSEPSSPVGHDAKRSSGGVGRDSEGEEEEKGGSAAGERGDGSXRRLNGKGKKRGEG 462
            MD+AL+DQLIREHTYGGLFFSGAD+RESD      XXXXXXXXXXXXXXXXXXXXXXX    SSEPS PVG DAKRSSGGVGR +EGEEEEKGGSAAG RGDGS RRLNGKGKKRGEG
Sbjct:    1 MDVALIDQLIREHTYGGLFFSGADKRESDSESEREXXXXXXXXXXXXXXXXXXXXXXXETL-SSEPSPPVGRDAKRSSGGVGRGNEGEEEEKGGSAAG-RGDGSGRRLNGKGKKRGEG 116

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BLAST of mRNA_Ecto-sp13_S_contig12701.2236.1 vs. uniprot
Match: D8LKU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU7_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.220e-7
Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  109 MDMALMDQLIREHTYGGLFFSGADERESD 195
            MD+ALMDQLIREHTYGGLFF+GADERESD
Sbjct:    1 MDVALMDQLIREHTYGGLFFAGADERESD 29

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig12701.2236.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig12701.2236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5K2A5_9PHAE	2.070e-27	83.90	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LKU7_ECTSI	1.220e-7	93.10	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig12701	contig	Ecto-sp13_S_contig12701:341..2201 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	60.1
Seed ortholog evalue	1.1e-06
Seed eggNOG ortholog	2880.D8LKU7
Preferred name	DCAF11
Model size	466
KEGG ko	ko:K10770,ko:K11801
Hectar predicted targeting category	other localisation
GOs	GO:0000122,GO:0000151,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0007568,GO:0008021,GO:0008134,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010259,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010941,GO:0010942,GO:0012505,GO:0016020,GO:0019219,GO:0019222,GO:0019538,GO:0019867,GO:0019941,GO:0030133,GO:0030163,GO:0030424,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031461,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0032501,GO:0032502,GO:0032991,GO:0036211,GO:0036477,GO:0040008,GO:0040014,GO:0040018,GO:0042995,GO:0043005,GO:0043025,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044449,GO:0044456,GO:0044464,GO:0045202,GO:0045892,GO:0045927,GO:0045934,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048638,GO:0048639,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051252,GO:0051253,GO:0051603,GO:0055120,GO:0060255,GO:0065007,GO:0070013,GO:0070382,GO:0071704,GO:0080008,GO:0080090,GO:0080134,GO:0080135,GO:0097458,GO:0097708,GO:0098588,GO:0098793,GO:0098805,GO:0099080,GO:0099081,GO:0099503,GO:0099512,GO:0120025,GO:1901214,GO:1901216,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1905802,GO:1905803,GO:1990234,GO:2000112,GO:2000113,GO:2001141
Exons	2
EggNOG free text desc.	WD repeat-containing protein
EggNOG OGs	KOG0266@1,KOG0266@2759
EC	2.1.1.229
Cds size	462
COG Functional cat.	B
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko01000,ko03016,ko04121

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462678.7196717-CDS-Ecto-sp13_S_contig12701:340..476	1681462678.7196717-CDS-Ecto-sp13_S_contig12701:340..476	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig12701 341..476 +
1681462678.7299316-CDS-Ecto-sp13_S_contig12701:1873..2199	1681462678.7299316-CDS-Ecto-sp13_S_contig12701:1873..2199	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig12701 1874..2199 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig12701.2236.1	prot_Ecto-sp13_S_contig12701.2236.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig12701 341..2199 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig12701:341..2201+
coding sequence from alignment at Ecto-sp13_S_contig12701:341..2201+

protein sequence of mRNA_Ecto-sp13_S_contig12701.2236.1

>prot_Ecto-sp13_S_contig12701.2236.1 ID=prot_Ecto-sp13_S_contig12701.2236.1|Name=mRNA_Ecto-sp13_S_contig12701.2236.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=154bp
FSSLPTPSLESTLVYRTAEAKSWFPGSSHVSTVLETMDMALMDQLIREHT
YGGLFFSGADERESDSESEREEEEEDSNDDDDASGSEVEEEEEEEEAPSS
EPSSPVGHDAKRSSGGVGRDSEGEEEEKGGSAAGERGDGSGRRLNGKGKK
RGEG

mRNA from alignment at Ecto-sp13_S_contig12701:341..2201+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig12701.2236.1 ID=mRNA_Ecto-sp13_S_contig12701.2236.1|Name=mRNA_Ecto-sp13_S_contig12701.2236.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1861bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12701:341..2201+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCTCCTCTCTACCCACCCCAAGCCTGGAGTCAACCCTCGTATACCGTAC
TGCTGAGGCAAAGAGCTGGTTCCCTGGAAGCTCCCACGTTTCCACTGTCC
TGGAGACGATGGACATGGCACTGATGGATCAATTGAGTGAGTTCGTGTAC
ATTTGCGAGACTGACACACCCGGTTTATCTACAGCATCGGTCAGTCGGAA
CCAGATCCGCATTTTGCTGCCCCGTGTCTGCAACTTGACTCTTCAGGCAC
ACGCCGTGCTTGTAGCGAGAGCGAACACAACGAGCTGGGAATAGAGGGGT
GAGCTTGCCAAGATCCATCCTTGATGGGCAAGTTTCGAGATGCGGGTCAG
AGAACACAACGTGCAGCAGCAGCGAATACGTGTAGCAGGGTTGATTTAGG
GCGTGCGTGCGACTGCAACGTTGCGGGCTAAATGGGACAAATATCATTCG
TGTTTCCCGACTCTCCGCTTGCTCTCCGCTGAGCCTCACACGCGTGCTGC
TATTGCCACAAAGGTTTAACTAGATGCTGCTTCTGTACAACAGAAGGTAA
GATACCTTCAGATGGTTTCCTGGCTTTTCTTGAAGTGTTTGCTCAGATTG
TCCTGCTGCTGCTCATCCCGGTCCTCGCGCATGAGGTGTGCTTCAGTAAG
AGAGCGGCACACGGCGGTATGCAACCGTTCAAGTCAGTAACACCAAGCCT
CACAGCCGTGATTTACTAATAACCGAGGGCGCAGCCTTGGCACTACAGTA
GAATAACGCGATTTAGCTGTCGAGAATGAGCGTTTGGAGTGGCTTCTCCG
GTGTCATTTCGTTCCTGCAGATGTGCGATAGCAACTACACAGCAGTAGAC
TGTTGTCCGTCGGTGTGTAGACTATGCATCCGACGACGTCGCCGGCACGC
TCCCACTGCTGTCGCGTCGGGGACGTCAGGCGGGGGGTTGGCCGGTATCA
TGGCAGCAGTTGCCGTGGAAGTGTGCGCAGCCGTTGGCCTAACAGCACTG
CTGTGTCAGGACAGAGACTTATTCTATTGACTCTCCTGATGGGGGTACCG
GACAAGGAGTGGCCGAAGCAGACGAGAAGTAGGGAGACCCCAACACACGC
TTGCCACCCCTCCCACCGGCATCACGGAGAACCGCCCGCACTTGAGAATC
TATACAAGTAGTGTTGGCCGAGCGGGTTTCTTGCTGGTCAATAGTTCCTA
CATAAATAGGGTTATGCTACCAATGGCCGCTATCTATTGATAGGTTTTAG
TGAAGGGGTTCTTGACCGAGCTCAAGCATGGTGTTAACCATAGGATGTAA
GTTTTTCGAGGGAATTTCAATTTTTTTCACTACTTATTACGAAACCCTAA
CGGAATCTTCGCACCACAAGACAATCGGTCCATTTTGTCTGCCGGCACGG
CTAGCTGTGTGCTCGCACCTCCCGATTCAACTCCCTCGAATGTTTTCGCT
CGTGTGGAAATTGACAACCCCTCTCCCCGCCCTTTGTGTTTGTGGTTGGG
CTCAATCTCCAAATTTCCGCCCATGTACGCAAGTCCGTGAACACACATAC
GGTGGCCTTTTCTTTTCGGGCGCCGACGAGCGTGAGTCTGATTCCGAGAG
CGAGAGAGAAGAAGAAGAAGAAGATTCTAACGATGACGACGATGCTAGTG
GCTCAGAGGTAGAGGAGGAGGAGGAGGAGGAAGAGGCGCCGTCGTCAGAG
CCATCTTCCCCGGTCGGGCATGATGCCAAGAGGAGCAGCGGCGGCGTTGG
CCGAGACAGCGAAGGAGAGGAGGAAGAGAAAGGAGGTTCGGCGGCGGGAG
AACGTGGTGATGGCAGCGGGAGGAGGCTTAACGGGAAGGGCAAGAAGAGA
GGAGAGGGGGC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12701:341..2201+

>mRNA_Ecto-sp13_S_contig12701.2236.1 ID=mRNA_Ecto-sp13_S_contig12701.2236.1|Name=mRNA_Ecto-sp13_S_contig12701.2236.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=462bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12701:341..2201+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCTCCTCTCTACCCACCCCAAGCCTGGAGTCAACCCTCGTATACCGTAC
TGCTGAGGCAAAGAGCTGGTTCCCTGGAAGCTCCCACGTTTCCACTGTCC
TGGAGACGATGGACATGGCACTGATGGATCAATTGATCCGTGAACACACA
TACGGTGGCCTTTTCTTTTCGGGCGCCGACGAGCGTGAGTCTGATTCCGA
GAGCGAGAGAGAAGAAGAAGAAGAAGATTCTAACGATGACGACGATGCTA
GTGGCTCAGAGGTAGAGGAGGAGGAGGAGGAGGAAGAGGCGCCGTCGTCA
GAGCCATCTTCCCCGGTCGGGCATGATGCCAAGAGGAGCAGCGGCGGCGT
TGGCCGAGACAGCGAAGGAGAGGAGGAAGAGAAAGGAGGTTCGGCGGCGG
GAGAACGTGGTGATGGCAGCGGGAGGAGGCTTAACGGGAAGGGCAAGAAG
AGAGGAGAGGGG