mRNA_Ecto-sp13_S_contig102.223.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig102.223.1
Unique NamemRNA_Ecto-sp13_S_contig102.223.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig102.223.1 vs. uniprot
Match: D7G0V1_ECTSI (Transcription initiation factor TFIID n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0V1_ECTSI)

HSP 1 Score: 413 bits (1061), Expect = 4.010e-142
Identity = 208/214 (97.20%), Postives = 211/214 (98.60%), Query Frame = 1 
Query:    1 MEHPQGYAHAPASQPAAAGNPPHDQPQQPVVRVALQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGATGVEAAREAAQRFVAVVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQPDA 642
            MEHPQGYAHAPA+QPAAAGNPP ++PQQPVVRV LQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGA GVEAAREAAQRFVAVVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQPDA
Sbjct:    1 MEHPQGYAHAPAAQPAAAGNPPQNEPQQPVVRVVLQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGAAGVEAAREAAQRFVAVVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQPDA 214
[Close]
BLAST of mRNA_Ecto-sp13_S_contig102.223.1 vs. uniprot
Match: F0YMS8_AURAN (Uncharacterized protein GTF n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMS8_AURAN)

HSP 1 Score: 172 bits (436), Expect = 3.540e-47
Identity = 88/179 (49.16%), Postives = 120/179 (67.04%), Query Frame = 1 
Query:   97 VALQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGATGVEAAREAAQRFVAVVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQ 633
            + +QNV ATVN+RI+ID  +LA   R+AEYNPKK  AV+MR+REP+ T L+FS+GK+VITGA   +AAR  A++F A++  +G  P        F VQNMVAT +   PI LE + Y  A++  YEPELFPGLIY+      V  +F SGR+VLTGGK   HL  A  ++ P+L ++++
Sbjct:   48 IDVQNVVATVNLRISIDLRTLALNARNAEYNPKKFAAVIMRVREPRCTALVFSTGKMVITGAKSEDAARRGARKFAAIIRKIGFQPKFG----EFKVQNMVATSDAGFPIRLEALVYAHAKFSSYEPELFPGLIYRLVIPKTVLLLFVSGRMVLTGGKSLGHLRTAFEKMYPVLTEFKK 222
[Close]
BLAST of mRNA_Ecto-sp13_S_contig102.223.1 vs. uniprot
Match: A0A7S3JUH6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUH6_9STRA)

HSP 1 Score: 172 bits (437), Expect = 1.440e-44
Identity = 86/180 (47.78%), Postives = 120/180 (66.67%), Query Frame = 1 
Query:   94 RVALQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGATGVEAAREAAQRFVAVVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQ 633
            R+ +QNV AT N+RI ID  +LA   R+AEYNPKK  AV+MR+REP+ TGL+FS+GK+V TGA     +R  A++F AV++ +G NP        F +QNMVAT +V+ PI LE + Y  +++C YEPELFPG IY+      V  +F SGR+V+TG K   HL  A  ++ P+L Q+++
Sbjct:   61 RIVIQNVVATANLRIAIDLKTLATSARNAEYNPKKFAAVIMRLREPRCTGLIFSTGKMVCTGAKSEHESRMGARKFAAVLDKIGWNPKFT----EFTIQNMVATADVNFPIRLEQLVYSHSKFCSYEPELFPGCIYRLVVPKTVILLFVSGRMVITGAKSVSHLQTAFDKIFPVLLQFKK 236
[Close]
BLAST of mRNA_Ecto-sp13_S_contig102.223.1 vs. uniprot
Match: A9CTI1_ENTBH (Transcription initiation factor TFIID n=1 Tax=Enterocytozoon bieneusi (strain H348) TaxID=481877 RepID=A9CTI1_ENTBH)

HSP 1 Score: 164 bits (414), Expect = 1.890e-44
Identity = 82/177 (46.33%), Postives = 121/177 (68.36%), Query Frame = 1 
Query:  103 LQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGATGVEAAREAAQRFVAVVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQ 633
            LQNV ATVN+   +D  S+A   R+AEYNPKK  AV+MRIREP+ T L+F+SGK+V+TGA   +A+R A+QR+  +++ +G +   +     F VQN+V++ ++  PI LE +AY  + +C YEPELFPGLIY+     +V  +F SG++VLTG K+ + + EA   + P+L QYR+
Sbjct:   60 LQNVVATVNLNCKLDLKSIALHARNAEYNPKKFAAVIMRIREPKTTALIFASGKMVVTGAKSEKASRIASQRYSKIIQKLGFSVYFDS----FTVQNIVSSCDLKFPIKLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKKREDIFEAFENIYPVLTQYRK 232
[Close]
BLAST of mRNA_Ecto-sp13_S_contig102.223.1 vs. uniprot
Match: A0A1Y1S6B8_9MICR (TBP n=1 Tax=Enterospora canceri TaxID=1081671 RepID=A0A1Y1S6B8_9MICR)

HSP 1 Score: 161 bits (408), Expect = 8.280e-44
Identity = 80/184 (43.48%), Postives = 124/184 (67.39%), Query Frame = 1 
Query:   82 QPVVRVALQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGATGVEAAREAAQRFVAVVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQ 633
            +P +   LQNV ATVN+   +D  S+A   R+AEYNPK+  AV+MRIREP+ T L+F+SGK+V+TGA   +A++ A+QR+  +++ +G +   +     F +QN+V++ ++   I LE +AY  + +C YEPELFPGLIY+     +V  +F SG++VLTG KQ + + EA   + P+L+QYR+
Sbjct:   34 RPEIVPVLQNVVATVNLNCKLDLKSIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEKASQVASQRYAKIIQKLGFSVFFDS----FKIQNIVSSCDLKFAIKLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREDIFEAFENIYPVLSQYRK 213
[Close]
BLAST of mRNA_Ecto-sp13_S_contig102.223.1 vs. uniprot
Match: Q8ST28_ENCCU (TRANSCRIPTION INITIATION FACTOR TFIID (TFIID-1) n=6 Tax=Microsporidia TaxID=6029 RepID=Q8ST28_ENCCU)

HSP 1 Score: 160 bits (406), Expect = 1.010e-43
Identity = 80/177 (45.20%), Postives = 120/177 (67.80%), Query Frame = 1 
Query:  103 LQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGATGVEAAREAAQRFVAVVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQ 633
            LQNV ATVN+   +D  ++A + R+AEYNPK+  AV+MRIREP+ T L+F+SGK+VITGA   +++R AAQR+  ++  +G N T +     F +QN+V++ ++   I LE +AY  + +C YEPELFPGLIY+     +V  +F SG++VLTG K  D + +A   + P+L Q+R+
Sbjct:   25 LQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAKSEKSSRMAAQRYAKIIHKLGFNATFDD----FKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQHRK 197
[Close]
BLAST of mRNA_Ecto-sp13_S_contig102.223.1 vs. uniprot
Match: C4VBV7_NOSCE (Uncharacterized protein n=3 Tax=Nosema TaxID=27977 RepID=C4VBV7_NOSCE)

HSP 1 Score: 159 bits (403), Expect = 2.880e-43
Identity = 80/177 (45.20%), Postives = 117/177 (66.10%), Query Frame = 1 
Query:  103 LQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGATGVEAAREAAQRFVAVVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQ 633
            LQNV ATVN+   +D  ++A + R+AEYNPK+  AV+MRIREP+ T L+F+SGKVVITGA   + ++ AAQR+  ++  +G N   N     F +QN+V++ +    I LE +AY  + +C YEPELFPGLIY+     +V  +F SG++VLTG K  D + +A   + P+L QY++
Sbjct:   26 LQNVVATVNLNCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKVVITGAKSEKQSKLAAQRYSKIINKLGFNADFND----FKIQNIVSSCDTKFSIRLEGLAYSHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFENIYPVLTQYKK 198
[Close]
BLAST of mRNA_Ecto-sp13_S_contig102.223.1 vs. uniprot
Match: UPI0010FB6E15 (TATA-box-binding protein-like n=1 Tax=Nylanderia fulva TaxID=613905 RepID=UPI0010FB6E15)

HSP 1 Score: 159 bits (401), Expect = 6.210e-43
Identity = 80/187 (42.78%), Postives = 121/187 (64.71%), Query Frame = 1 
Query:   73 QPQQPVVRVALQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGATGVEAAREAAQRFVAVVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQ 633
            Q Q+  +   LQNV ATVN+   +D  ++A + R+AEYNPK+  AV+MRIR+P+ T L+F+SGK+VITGA   E++R AAQ++  ++  +G N         F +QN+V++ +    I LE +A+  + +C YEPELFPGLIY+     +V  +F SG++VLTG K  D + +A   + P+L QYR+
Sbjct:   19 QQQRSGITPVLQNVVATVNLNCKLDLKAIALRARNAEYNPKRFAAVIMRIRDPKTTSLIFASGKMVITGAKSEESSRIAAQKYARIIHKLGFNTRFAD----FKIQNIVSSCDTKFSIRLEGLAFAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDEIYQAFENIYPVLTQYRK 201
[Close]
BLAST of mRNA_Ecto-sp13_S_contig102.223.1 vs. uniprot
Match: A0A109FK61_9BASI (TBP-domain-containing protein n=3 Tax=Rhodotorula TaxID=5533 RepID=A0A109FK61_9BASI)

HSP 1 Score: 160 bits (405), Expect = 7.420e-43
Identity = 80/178 (44.94%), Postives = 118/178 (66.29%), Query Frame = 1 
Query:  103 LQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGATGVEAAREAAQRFVAVVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQP 636
            LQN+ ATVN+   +D  ++A   R+AEYNPK+  AV+MRIREP+ T L+F+SGKVV+TGA   + +R AA+++  +++ +G           F +QN+V + +V  PI LE +AY    +  YEPELFPGLIY+     VV  +F SG++VLTG KQ D + +A  ++ P+LN+YR+P
Sbjct:   82 LQNLVATVNLECKLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALVFASGKVVVTGAKSEDDSRLAARKYARIIQKLGFETKFTD----FKIQNIVGSCDVKFPIRLEGLAYGHGHFSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKQRDEIYQAFAQIYPVLNEYRKP 255
[Close]
BLAST of mRNA_Ecto-sp13_S_contig102.223.1 vs. uniprot
Match: A0A7J7ISE2_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7ISE2_9RHOD)

HSP 1 Score: 159 bits (403), Expect = 9.550e-43
Identity = 83/184 (45.11%), Postives = 120/184 (65.22%), Query Frame = 1 
Query:   91 VRVALQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGATGVEAAREAAQRFVAVVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQPDA 642
            V V LQNV ATVN+   +D   +A + R+AEYNPK+  AV+MRIR+P+ T L+FS+GKVVITGA   E AR AA+++  +V  +G       +   F + N+VA+ +V  PI LE +A+  + +  YEPELFPGL+Y+     +   +F SG+VV+TG K  D LN+A  +L P+L Q+R+ D+
Sbjct:   39 VEVKLQNVVATVNLVCPLDLRHIAMRARNAEYNPKRFAAVIMRIRDPKTTALIFSTGKVVITGARSEEDARLAARKYAKIVRKLGYEDVKFAD---FGLHNLVASADVRFPIRLEALAHAHSNYAHYEPELFPGLVYRMLEPKLALLIFVSGKVVITGAKSRDDLNDAFQKLYPVLCQFRKADS 219
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig102.223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0V1_ECTSI4.010e-14297.20Transcription initiation factor TFIID n=2 Tax=Ecto... [more]
F0YMS8_AURAN3.540e-4749.16Uncharacterized protein GTF n=1 Tax=Aureococcus an... [more]
A0A7S3JUH6_9STRA1.440e-4447.78Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A9CTI1_ENTBH1.890e-4446.33Transcription initiation factor TFIID n=1 Tax=Ente... [more]
A0A1Y1S6B8_9MICR8.280e-4443.48TBP n=1 Tax=Enterospora canceri TaxID=1081671 RepI... [more]
Q8ST28_ENCCU1.010e-4345.20TRANSCRIPTION INITIATION FACTOR TFIID (TFIID-1) n=... [more]
C4VBV7_NOSCE2.880e-4345.20Uncharacterized protein n=3 Tax=Nosema TaxID=27977... [more]
UPI0010FB6E156.210e-4342.78TATA-box-binding protein-like n=1 Tax=Nylanderia f... [more]
A0A109FK61_9BASI7.420e-4344.94TBP-domain-containing protein n=3 Tax=Rhodotorula ... [more]
A0A7J7ISE2_9RHOD9.550e-4345.11Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig102contigEcto-sp13_S_contig102:29324..38368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score415.6
Seed ortholog evalue1.4e-113
Seed eggNOG ortholog2880.D7G0V1
Model size1283
KEGG koko:K03120
KEGG Pathwayko03022,ko05016,ko05165,ko05166,ko05168,ko05169,ko05203,map03022,map05016,map05165,map05166,map05168,map05169,map05203
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.DNA-templated transcription, initiation
EggNOG OGsCOG2101@1,KOG3302@2759
Ec32 ortholog descriptionTATA-box binding protein
Ec32 orthologEc-23_002200.1
Cds size645
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000,ko03021
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig102.223.1prot_Ecto-sp13_S_contig102.223.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig102 29962..38368 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462514.6081154-UTR-Ecto-sp13_S_contig102:29323..299611681462514.6081154-UTR-Ecto-sp13_S_contig102:29323..29961Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig102 29324..29961 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462514.6177416-CDS-Ecto-sp13_S_contig102:29961..300571681462514.6177416-CDS-Ecto-sp13_S_contig102:29961..30057Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig102 29962..30057 -
1681462514.6269333-CDS-Ecto-sp13_S_contig102:30318..304091681462514.6269333-CDS-Ecto-sp13_S_contig102:30318..30409Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig102 30319..30409 -
1681462514.6407855-CDS-Ecto-sp13_S_contig102:30934..310181681462514.6407855-CDS-Ecto-sp13_S_contig102:30934..31018Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig102 30935..31018 -
1681462514.6515818-CDS-Ecto-sp13_S_contig102:31671..318351681462514.6515818-CDS-Ecto-sp13_S_contig102:31671..31835Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig102 31672..31835 -
1681462514.662802-CDS-Ecto-sp13_S_contig102:32525..326511681462514.662802-CDS-Ecto-sp13_S_contig102:32525..32651Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig102 32526..32651 -
1681462514.6786172-CDS-Ecto-sp13_S_contig102:38284..383681681462514.6786172-CDS-Ecto-sp13_S_contig102:38284..38368Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig102 38285..38368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig102.223.1

>prot_Ecto-sp13_S_contig102.223.1 ID=prot_Ecto-sp13_S_contig102.223.1|Name=mRNA_Ecto-sp13_S_contig102.223.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=215bp
MEHPQGYAHAPASQPAAAGNPPHDQPQQPVVRVALQNVTATVNMRITIDP
SSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGATGVEAA
REAAQRFVAVVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAYC
QARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALV
RLLPILNQYRQPDA*
back to top

mRNA from alignment at Ecto-sp13_S_contig102:29324..38368-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig102.223.1 ID=mRNA_Ecto-sp13_S_contig102.223.1|Name=mRNA_Ecto-sp13_S_contig102.223.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=9045bp|location=Sequence derived from alignment at Ecto-sp13_S_contig102:29324..38368- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAACATCCCCAAGGCTACGCTCATGCCCCGGCATCCCAACCTGCAGC
TGCAGGGAATCCTCCGCACGACCAGCCACAGCAGGTACTACTTTAGACAA
TCGCTCTAGAGTCGGTCGTCGGAGTGATTTAAACCAGTGCTGCACGGCTG
AAAAAAAAAAAGATGGCGGCGGAACAAAAACAGTCGGTTTACAAAGAAGA
GCAGCGCGACGGGCGTACACCCACCCAAGGCTAAAGGTGTACAGCAGTAG
ACTATTCCAATAGCTATCTAGAGAATCAAGATTTGTTTCCGTCCACTGTA
GGCTTCAAACTTGTCGGCGTAACCCGCAGCCCCTCCCCTAAAAAAATGTG
AGACTCTGCTCGTGTATCTGCGCGGCGCAACCACGCTGCTGTGCACCCCC
CAAAGAGACCAAGCACGAGAACGCGCCCACCACAGCATCGATCGCCACCA
AAATTTGAGGGAGGATGGACTGAGCGCCAGAGCATGTATTGCACAAGAGT
CAAACTTGATTAGTGCCGAGAATCGAGAGGTAGACACGGATGAAGTTCAA
AACTTGGGTTCGCATACAGGCGCCATGCTTTTCTCCTGCCACGCTGCCAG
CAACACCAAGCATTGGTAATGTTAGCTGCTGATCTTGTGGTTGTACAGCA
CTTGGAATTGTGCTGCAAGATAAACTACAGATGGAGTACTGTTGAATGGC
GTCAGCTAGATTTGAACTAAAATTGCAGTTGGGGTGCCCCCTCTCCTGCT
GCTGCTGTGTTGCACCGCACACACGTGTGCCTGTTGACTCGGGACCCTCA
CCCAGCAGCACAACTCTCCTGAATCCCGAAGAAAAAAAAAAGAGAAGGAT
GGAGTAGCGACAGTGACACGGCAGCTACACTTACAGTGAGTATGTGGTCA
CTAAAAACGTTGTGCTGATGTCGCACGCAGGAAACGGGCCACCCACTTCC
ACAAGTTTGATAGCTACGCACTTTACAGTAGCATCGGGTGTGTCGAAAAC
GCGAGGAAAAACTTATTAAACACTGCACGCAACTCCGGGGTCCCCGAGTT
GCCCATCCGAACCTATCAAACACCAACGGCTGCTCTTCTTGCCCCACAAG
TTTAACTGCTCAGATAGAGGTCAAGCTGGAGCAAGCAAGTACTTGGGAGC
GTGAGCTCGGAAGTACTTCGACCCTCTCTGCAACAGTAACACGAGCAAAC
ACGAGAACGGGCAGCCGCGGCTTCCGGTGTTGATCGCCGACTTGGCTCAG
GAAAGCACAGCGTTCACAACAAGAAACAAGCCCCCTCAAGGCGTGAACAC
CTACTGCCAACCCACTTTTTATGTGGCAACACCAAGATGATCCAAACTTC
GTTGCAAAAACATCGTCCCCGAATGATACAACAAAGAACTAATTTACAGC
CAGGATAAACGACGCAGGCCCAACGCGCCCTCGTCCCGATAGGTTTCAGG
CACTTTGCCGATAAACCACGAAGAAGGAAATACTATTCCAATTAACCACG
GACACCCAGCCTGGCTGAAACTACAGAAGCGTCTCTCGTCCGTCTCCCTG
CGCACCTACAGTATGAAAAATGGTCTGGCGAAAATGCGTACTCTAGCCGG
CTGTTCTATGGCTTCTGCTCTTATGCCTGATAATGTGCCACCCCTGGTCG
TCATTTTTCCCGGGTGCATCCAGCGGAAGGCAAATGAAGCACGGACCTGT
TGAACCACCAAGAACGACGAGCAAAATGTGACATGGAAACATTGGTCAGA
TAAATCAGATCACATGCACCCTTTGGAGGTTAGATCTTTTGATACGATGT
GGATGGAGATCTAACGTGCAAAAATGCTTGTCACGACATCCCCAACCCCA
AGCCAACCCCCTTCAAGGAACGCTACATGCACTTGCCTGAAGAAGTAGCC
AGATCTCAGCTCTAGGCGTCGTGACCGACATTCGCAACACCATCATCTGT
GTCTCCGTCACTCTACACCGGGTCGACGCCCTTCTCGCTCAACCCGTCAG
ATTCCCCACTGCTGGAGCCAGATTTACCCGAATCCCACTTCAAAAAAAAG
TCGTCGAGTACACCGACCGAACTGTCGCCGTCCTCGTCCGACTCGGGGTC
CTCCAGCTCTGCGTCATTCGATTCCGCGGCGTCGCCGGAGGCAATGTCGT
TGCTCGAAGGTGACTCGAGGTTCCCCGCCTGCACGTCGTTTTGTTCCGCT
CCATGCGATTCCTGCTGCTTCGTCGAGGCGAGAAAGAGTGCGAATGCATT
GGATGGCTGTGGTCGGGTCTTGACGGGTGGTTGAGTACAGTTTCAGTATC
CTCGATCGGCCCAGTGTGAGGAGCACCCACCGTAGGCCGGGATGCAGACC
CCCCCCTGTTCGCAAGGATGCCGACGGCACCCGACCTAGGGTGCAACGAC
TTCTGCAGGCGCAATAGAGCGAGCACTTTCTGTCTTTGCACCTACACCTG
TTGCATAGGGCCGTCTTCGGATTGCAACCGCACGCCAGCGTGATTGTATT
TCTGTCTGGGCCGATGTAAGAATACTCGGACAGCCAAAGCACGCGATGCT
CGGCTGTGAGTTGGTCCGGGTCGCTCCCCTTTCCTCGTGGGTCAACGTTC
CATCCTTTGTCGACCACCTCTGTCGCCGGCATGATCTTCCTCAGGCCATT
CTAGTAGTACCGGAAGATTGCCTTACCCCGTTCTCCCTGGTTGCGCAAGG
AAAAACAAGACGGACAGTTGGCTGTTGTCTTGTTCTTAAGAAGTTGGGGG
ATGGCGTAGCGGATCAAGCTCACGTAGCCCTCAACGTAGCCGTCGACGCT
TCCGAGCAGCTGGGCTGGAGCTGAATGAGCACTTCCAAACGCCGCTTCAT
CGTTGTAGAAATACGCGCATCCGTTGATATCAACGGCCCACACGCCGTCC
TGCTCCTCGAAGAACAACGGCTTAAAACAACCTCTCCATCCGCAAGCTCT
AAAGGACGAGTATCCGCATCTTGTCGGACGGCAGCCCGGAAATTGCCGGG
AGGTAGTCACAGCCCGACTACATTAACGGGGCATTTGCTACATTCGGTGC
CAGGGTTGTGTGTAATCCATTCGCATTCCATACTCCCGCGCGCCTTCTTT
CACTTCTTGCCTATTGGTTGGCTACAAATAGCACCGCGGGGGTAGAAAGT
CTACTACCCGCATTTCGCTTGCTTGGCTGATACCCGGCTTGTCTTCGGGT
TCCCGCTATGACTTCTACGCCGAGAATCGACGGGGTGACTCCCCCCAGAC
TGCGATTGTCGCCGTTCATCTTCGGCATTCGCGCGATCTATTCGTGCCGT
TGCCTCCCTCCTTGCCTCGCCCTGCTGCTTGTAATAATCCTCCTCCGAGA
GGTTGCTCTCACGATTAGGTTGGCCACCCGCAACCCTCACAGAGGGCCTA
CTCCTGTGTTTCCTCTCCGACTGGGTCTTTCCTTCTGTCCGTCGGACGCG
TGCACCGGAATGTCTCACGTCGCGCTTTGTCGCGGCGATGGGGGTGCGCA
CCTCGCGTTTAGATTACCCTCTCTCCTGCTCCCGCCCCGTGGACGTTCAC
TTGTGATTCCTCCCCCTGTGTGGTCGACCACTGGAGTCCGATCGGTAAGC
GTGCCTTCCGTAAGCTGGCGAAGGTCCCATATTAGCTGCATGCCTCCGCT
TCTGGGTGTAACAGAGCTCCCAGGCTGGTTCCGAGGCCTAGCCGGTGGCG
TAGCCAGCTGACCTGTGGGGCTGTTACCCCCACAAGCCGGGCTGCCCCGC
CTACCTCTCCGACGGGCCATCTAACAGCAACTCGACCCATGCCGGCCGAT
ATTCCACGCATTGAACGCCTTACCAGAGTAAGCAACAAAAATACAAAATG
TCACGTGACATGTACAGCTACGCAGGCGCACACCTATCCTAGGTCTGAGC
GCTTCGTTGTCTCTTGACAGCCATGCCGAAGATCTGATCCTCTGTGCGGG
TATGCTTATGTGCCTGAGAGCGTGACGACTGAAATCTCTCTAACTACGTA
CTGCAGTATACATACCTGACTGTAAAAGTGCGGGATTTCAATCTACAGCA
GTGTATGCACGGTCTGGAGTTTACGTAGCTGAGCGCCCCGGGTCATGTTT
GGTTGATGTATGGCAAAGCACTGAGATTAATTGAACTTGAAGACAGTCGT
ACTTGCCTTCTTGAAGCCGAGATATTCTGAAAATCGTTGTGATAGTCTGA
CCCTGAGCTAGCGTGATTGTATCGGGCATTTCCATAGTATCTTGGGGTGG
GGATGGTGTGTCCAGTGGATATACATGCGCAACATGCACGAGCGTGCGTT
CGGACCCCCGGCGTGGGCTCTCCTACAATTTGAATTTTGAGCACATCATG
CTTATCCCCTGTAGCACCGAATCGCCTCAAACCTTTTGCATTAGGTGGCA
ATGCAACCTAGGTACATGGTGGAAGCATAGTTTGGCTGCAAGATACCAAC
CTCGCGCAGAGGTCGGTTCGCGTGTGAAGCCCGTGTCCTGATCTTGGAGC
TTCTGCAGTGCGGTAGGCTCTCGCTAAAGTCCTACTTTCTCACCCCACCA
AGTGCACCTGGACGTATAAAACATACCCTGCTGTGCCCTGGCATCGTGTT
AACACAACTCTTTGGAAAAGTGGACAGTTTAGCCTCTTGTTCGCCCTCAT
AAGCCGGTGCTGGGTGTGGAGGTCTGTTGCGCCGCGAGCCGCCTGATCAG
AGGGGTTTCCACGGGGGGCTGCTCTCCCGTTAGAAGCTTTTTTTCTCACA
CTTTTTTTTTTCAGCGGTGCAGCACTGAAACCAGCAGCGGCACAACTTCA
CTAGACATTGTACTGCTGAATGTGTGTGTGCATAGTCTACGTACAACAGC
AGTCAACAGCAACAGTCAACAGCAGTCAACAGCAGTTGGACCTCCGTGTG
GCACTTGCACCTTGAACCTGCTGTGTAGAATGATTCACTGCATTCATCAC
CCAGCAAGTCATATGAACAACACGGAGTATTGTGCCATCTGATTACTACA
GCAGCCCTAAATTCCACATCGATGTACAGTAGTACAAAGTACTTGGAGAT
TATATATTCTACTGCTGTAAGTCGTCACCAAGAGCTCCGAAATCTGTGAT
GCGCGCTACTCTTTACGACCTTGCTGCTCGTGCTTCTGAACACCAACAAA
TAAAATCGCCCGACGGCATGGAGTGCGTGGATTTGTGGGTTTTTTTCGCC
CTGGTTGTGGCAGCCGATGGTCTTCCTCAGCAGCAGTAAAGAATGGTGGA
TGTCTGTAGACTAGATTGTAGAAAGACTGTTCGTAGACTTTACATCGTTT
GGTAGTCTACTGCTTGCTGGCAGTGTGACCTTGAATGTTTGCGGCTACAT
GTAGGTTCGTCCGTTCGTCTCGCAAGATCTGTGCTGCACCCAGATGCACG
TGAGAAGCTCGACTTCGCACCGCAGCGGCAGCAACGGTCGGCCGTGAGCA
TGGTGCTACATAATGCAGCAGTGCTCAAAACGAGCGCTGGGCCTCAGCAG
GCACATTGCCCTACCAAGGCCCGATCGATGGACGTTTTTGGCCTAAACCA
AACCCCATTCAATTCGTCAATGCCCGGAACTGCCGTGCTTCCTTGCCAGC
CGATTGTTCGAGTCGCCGCAGGCACGTTGCCTGAACGAGGCCGAATCGAC
GGATACGTTTGGCCTGAACCAACACCCTTTCCTCGATGCCCGAACTACCG
CCGTGCTTCCTTGCCAGCCGGTTGTCCGAGTCGCGCTCCAGAATGTGACG
GCGACGGTCAACATGCGCATCACCATCGATCCCTCTAGTCTGGCCAACAA
GATCAGGCACGCGGAGTACAATCCGAAGAAGCTACCCGCCGTGGTAAGTG
CAGCGACATCAGTCGTGCTGTGCGCATGTCGACCGTATACGACACAAGAC
AACACACCCCCTGGACCGATTTTCAAAGCTTAATAACTCCACGACGAGGA
GGATGCATAAATGAAACGATACATTTTCGGAGAGCTCTCAACCAGACGCT
TTCGATGCCGCCGTTTTCGGCGCTGTGATTCTTCCTGCTGTTGATAAATC
AAGATTTGAAAGTAAGTCCAGGGGGTTGTGTTGTGTTGTGTCGTACACGG
TGTGCCTCTAGGATCGAGGTCGTTTCTTCAAGAAAAAGACCACGCGGTGG
CTACGGTCGGGAGTTCGACTATCGGCGAGGCGTATTTTCGTCGAAAGACT
TGAGGGAAGGACGACTGGAGTCCTCTCGCTTGTATCTAGAGTTCTACGGC
AAGCAGCGCAGAACGATTGTGTTGGTGTCACCCCCGTGTTGTGAGGTCTT
CATTTGGAGGGCCAACGCCGCAGGGTAGGCAAACAAAACTGCGAAGGCAT
CATGGGAGCAACAGAAACAGAAAACTGTAGCGTCCGTCGCAACGCAAGAG
TGGTTGCCGTCAGCGTAGATGAGATCGCCGAGAATTGACACGCTTGTTGT
CACTGTAAATTGATATATAACCCCGTTGTGCGCTTGACCCCCGGCCCGCT
GTGTAACGTTACGCGAAAACGATCTGCTGACAGGTGATGAGAATACGAGA
GCCGCAGGCTACCGGCCTCTTGTTCTCTTCGGGCAAGGTTGTGATCACGG
GGGCCACGGGTGTGGAGGCCGCTCGCGAAGCCGCCCAACGATTCGTCGCC
GTCGTGGAGGGCGTAGGACTAAACCCCACGACCAACCCGAACCAACTGTA
AGTTTAGTGCTGTTGTAAGGAATCATTTTTTTTCTTTCTTTCAGAAACCA
ATCAAATTCATTTCGAAAGAGTGTGTTGTCGTCTTATTTATCATGGCGAC
AGCCCTCCCATTTTTCGTGGTGAGACGTGTTTTTAACTCTTCAGTGTATG
TAGAATACTGCGTTTCAATGTTCTTTTTCGTACAACGACAACCATCCAGG
GTCACACAGGAGGGTCTGGGATAAATTGGCAATGAATCCATAGTGTTGTA
CGATGACCACCTTGTGTTTCCAGAGGTCACCGAGCAGCACTGTGTTGTGC
GGAAAGGTGCTTCGTTTCATGTGCAGATCATGGGGATTGTCGTACATTTT
GTCCGGGAATTGAACTTGCACACCACCCCCAAATGCTGAAAACCCGCTCG
TTTTTGGTGTGGGGGGACACAGTAGTTGTGTGGGATGGAAGGCTGCCATG
TACCCTTGGCACCAAGCCTTTTTGCAAAACCGGGTTTCGCGTTTTTTTCC
AACGGAGCCCAATAGCGTCGAGCGTGTCGTGTCGTTCCTGGATGTTAGAG
TGCTCAAGTCCGACGCGCGCGTGCGAGACAATGGTTGATGAGCTCTCGAC
CATGGCGTATGTTTGAATGATAGTTTCTCCACCCCCTCCGGCACACACAG
GCGCTTCGCGGTACAAAACATGGTGGCTACTTTTGAGGTGGATGCTCCCA
TAAGCCTTGAGCTCATGGCCTACTGCCAGGCCAGGTGAGAAGGGGCCGAG
ACAAAGCCATCGACTCAACTCTACTTGAACCCGTCCCACCCCAGATTGTG
TGCTCATCGATTCTAAGTTCACCCAACATGACCTGGCTTCTATCTAGCGT
CCTGGAAGTGTCACGGTCGCATCACGAAGCTTTCGCTTTCGTCACTGACT
GCTGTTGTGGAACATACAGGGGTACTCTCCACAAAGAAAACGATTCCAGA
ATTGCTGAATTTCCTGCGTATCTCAATTTTGGGCTGGCATTTGACCGCCG
AAAGTCGTTTCCTTGACCCTTTTCAAACAATAATTGCTCGAAGTGTGTCT
GTTGGCGTATTATTGTTCCCACTGGGTCTTTTCATTGTGTACCTTCGGTC
TGGGTGGGTTTGTGATTATTTAAAAAAAATTGCCTTCACGGCGTAAGGAA
AGGGCGGCCCTGAACGAAGACGTTAGAACGCCCTTCTTCATTGTTGGTGA
CGGCAGCACTCCATCTCAAACGACCCCCCACCCCGCTGCCTGTCTCTACC
GTTGTGCAGATGGTGCATGTACGAGCCGGAGCTCTTTCCAGGGTTAATCT
ACCAGACAGCGCACAGAGGGGTGGTGGCGCATGTTTTCTCGTCCGGCAGG
GTGAGTAAGGGATCTCCGGACAGATTGTCTGGGTCTATGCCCCCCCACCC
AGGTGCCATACTCCATGATTCAACAATTTTCGCTTTATGCACTCGGCCGT
TTCTTTTACGTGTGTGTGTGGAAAGGAGCAACGCGGTGCCTTTTGGGTCT
CTATTGTACTGTACCCAGGTCTGACCATCTCGACGGGCCATCATCTTGTC
TCAAAAGGGTACCCTCTTTGCGCTTGATCCTGCAATGAATAACAATGACC
CGTGACGCCAGGTGGTGCTGACCGGGGGCAAGCAGGAAGACCATCTCAAT
GAGGCGCTGGTCAGATTGCTGCCCATCCTTAATCAGTACAGACAGCCAGA
TGCGTAGCTTGTTGGGGTCACGCGTTTCACTTGAAGGAAGGAACGGGGTA
AACCACTGGGGACAAGAGAGGTGATCTTCCCGGCGGGAGGTCAACAGAAA
CCCGAGGATCGACGGGCGCCTGACGGACATCTGGTGTACATACGTAGTGG
CCAAAATGGCAACACTTTGGTGTTGGCACCAACATCCTTCTTTGTCAGTG
GTTTGGCCGCCTCTGTTTTTCCGCGCCGCGGCTTACCGCGAGATCGACAA
CCCAAGCAAACCGCAGCATGCACGGAAGAAGCTTAACCCTGCGAGAGGGC
CGATGTGGTGACTGCGTAGGCCAAGGGGGAGTGGGTTAAATAGGTCATAT
GGTTTTGGAGCTTTGGTGTGACGTGAACTGCTAGTGGTCACGTCATACAT
TACTAGAAGTCGGTCGATCGAGAGACAGGGAGACATAGACAGATAAATAC
AGAGAGAGAGGTTATTGCCCGGAACCCGTGCAGTAGAACTAGTCATTGTT
GAACACACAAATGCTCCAACAAGAGGGAGAGAGCGAAAACATGAGGCGGT
TTGATTGAATTTTGTACAAAGTCGTTCGGTGCCAAAGTCCAGGAAACGGG
TGCTAGCAGCAGCTACAGTGCTCTATCGACAAGCCTCGAAACAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig102:29324..38368-

>mRNA_Ecto-sp13_S_contig102.223.1 ID=mRNA_Ecto-sp13_S_contig102.223.1|Name=mRNA_Ecto-sp13_S_contig102.223.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=645bp|location=Sequence derived from alignment at Ecto-sp13_S_contig102:29324..38368- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAACATCCCCAAGGCTACGCTCATGCCCCGGCATCCCAACCTGCAGC
TGCAGGGAATCCTCCGCACGACCAGCCACAGCAGCCGGTTGTCCGAGTCG
CGCTCCAGAATGTGACGGCGACGGTCAACATGCGCATCACCATCGATCCC
TCTAGTCTGGCCAACAAGATCAGGCACGCGGAGTACAATCCGAAGAAGCT
ACCCGCCGTGGTGATGAGAATACGAGAGCCGCAGGCTACCGGCCTCTTGT
TCTCTTCGGGCAAGGTTGTGATCACGGGGGCCACGGGTGTGGAGGCCGCT
CGCGAAGCCGCCCAACGATTCGTCGCCGTCGTGGAGGGCGTAGGACTAAA
CCCCACGACCAACCCGAACCAACTGCGCTTCGCGGTACAAAACATGGTGG
CTACTTTTGAGGTGGATGCTCCCATAAGCCTTGAGCTCATGGCCTACTGC
CAGGCCAGATGGTGCATGTACGAGCCGGAGCTCTTTCCAGGGTTAATCTA
CCAGACAGCGCACAGAGGGGTGGTGGCGCATGTTTTCTCGTCCGGCAGGG
TGGTGCTGACCGGGGGCAAGCAGGAAGACCATCTCAATGAGGCGCTGGTC
AGATTGCTGCCCATCCTTAATCAGTACAGACAGCCAGATGCGTAG
back to top