prot_Ecto-sp13_S_contig12694.2228.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12694.2228.1
Unique Nameprot_Ecto-sp13_S_contig12694.2228.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length249
Homology
BLAST of mRNA_Ecto-sp13_S_contig12694.2228.1 vs. uniprot
Match: D7G788_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G788_ECTSI)

HSP 1 Score: 481 bits (1238), Expect = 6.100e-171
Identity = 246/249 (98.80%), Postives = 246/249 (98.80%), Query Frame = 0
Query:    1 LTAFQQGVLSVSNSAVRLHSRGCLLRATFSGLVEKPGVRGTPPTLHYPENLTCCALNSPSTMMGMGADSTHVTVGSFGGGVAGGIPGRSPPSLFQLDPVPGLRLVKAVGLPEEAGVTAIARGAMLTVGGNDGRIRLLDPRLRSTSVEHVLEAHTGPVQAVAVTPTDGVKIVSVGMTSKSLNPYDTSAPTELFGDPVVRVFDARMPTRPGPPLQFSMLGAPRLVRFLADESLALASSSGQFLVSKEPFTG 249
            LTAFQQGVLSVSNSAVRLHSRGCLLRATFSGLVEKPGVRGTPPTLHYPENLTCCALNSPSTMMGMGADSTHVTVGSFGGG AGGIPG SPPSLFQLDPVPGLRLVKAVGLPEEAGVTAIARGAML VGGNDGRIRLLDPRLRSTSVEHVLEAHTGPVQAVAVTPTDGVKIVSVGMTSKSLNPYDTSAPTELFGDPVVRVFDARMPTRPGPPLQFSMLGAPRLVRFLADESLALASSSGQFLVSKEPFTG
Sbjct:   30 LTAFQQGVLSVSNSAVRLHSRGCLLRATFSGLVEKPGVRGTPPTLHYPENLTCCALNSPSTMMGMGADSTHVTVGSFGGGAAGGIPGGSPPSLFQLDPVPGLRLVKAVGLPEEAGVTAIARGAMLAVGGNDGRIRLLDPRLRSTSVEHVLEAHTGPVQAVAVTPTDGVKIVSVGMTSKSLNPYDTSAPTELFGDPVVRVFDARMPTRPGPPLQFSMLGAPRLVRFLADESLALASSSGQFLVSKEPFTG 278          
BLAST of mRNA_Ecto-sp13_S_contig12694.2228.1 vs. uniprot
Match: A0A6H5KX54_9PHAE (Exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX54_9PHAE)

HSP 1 Score: 405 bits (1041), Expect = 1.090e-127
Identity = 213/240 (88.75%), Postives = 214/240 (89.17%), Query Frame = 0
Query:   33 VEKPGVRGTPPTLHYPENLTCCALNSPSTMMGMGADSTHVTVGSFGGGVAGGIPGRSPPSLFQLDPVPGLRLVKAVGLPEEAGVTAIARGAMLTVGGNDGRIRLLDPRLRSTSVEHVLEAHTGPVQAVAVTPTDGVK------------------------IVSVGMTSKSLNPYDTSAPTELFGDPVVRVFDARMPTRPGPPLQFSMLGAPRLVRFLADESLALASSSGQFLVSKEPFT 248
            VEKPGVRGTPPTLHYPENLTCCALNSPST+MGMGADSTHVTVGSFGGG AGGIPG SPPSLFQLDPVPGLRLVKAVGLPEEAGVTAIARGAMLTVGGNDGRIRLLDPRLRSTSVEHVLEAHTGPVQAVAVTPTDGVK                        IVSVGMTSKSLNPYDTSAPTELFGDPVVRVFDARMPTRPGPPLQFSMLGAPRLVRFLADESLALASSSGQFLVSKEPFT
Sbjct:    3 VEKPGVRGTPPTLHYPENLTCCALNSPSTIMGMGADSTHVTVGSFGGGAAGGIPGGSPPSLFQLDPVPGLRLVKAVGLPEEAGVTAIARGAMLTVGGNDGRIRLLDPRLRSTSVEHVLEAHTGPVQAVAVTPTDGVKSWQNNPPTTHSPEPYTYVPLDQTQIVSVGMTSKSLNPYDTSAPTELFGDPVVRVFDARMPTRPGPPLQFSMLGAPRLVRFLADESLALASSSGQFLVSKEPFT 242          
BLAST of mRNA_Ecto-sp13_S_contig12694.2228.1 vs. uniprot
Match: A0A6G0XRY2_9STRA (Exonuclease domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRY2_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 4.090e-8
Identity = 58/203 (28.57%), Postives = 97/203 (47.78%), Query Frame = 0
Query:    6 QGVLSVSNSAVRLHSRGCLLRATFSGLVEKPGVRGTPPTLHYPENLTCCALNSPSTMMGMGADSTHVTVGSFGGGVAG-GIPGRSPPSLFQLDPVPGLRLVKAVGLPEEAGVTAIARG---AMLTVGGNDGRIRLLDPRLRSTSVE-HVLEAHTGPVQAVAVTPTDGVKIVSVGMTSKSLNPYDTSAPTELFGDPVVRVFDAR 203
            +GV+++S+      SRGC+       LVE P            +++TC  L  P T       S H+ VG   G +A   + G  P     L P+  +    A         TA+A     +    G + G++ L D  LRS  +E  +  AH+G V  V++   D   +++ G++S+S+NPYD +AP +++ DP++++FD R
Sbjct:   98 EGVVAISDQMAVFRSRGCVHNNAV--LVESP------------QSITCARLARPDTPKA----SDHLLVGLTSGNLAAYDLQGHHP-----LQPIWSMDFYNAT--------TALASSDDSSFACAGTSIGQLDLFDVNLRSRRIEASIPNAHSGSV--VSMDMIDNY-VLTCGVSSRSINPYDKNAPIKIYPDPLIKLFDLR 266          
BLAST of mRNA_Ecto-sp13_S_contig12694.2228.1 vs. uniprot
Match: A0A485KVT7_9STRA (Aste57867_12510 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KVT7_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 8.510e-6
Identity = 58/201 (28.86%), Postives = 95/201 (47.26%), Query Frame = 0
Query:    7 GVLSVSNSAVRLHSRGCLLRATFSGLVEKPGVRGTPPTLHYPENLTCCALN--SPSTMMGMGADSTHVTVGSFGGGVAGGIPGRSPPSLFQLDPVPGLRLVKAVGLPEEAGVTAIARGAMLTVGGND-GRIRLLDPRLRSTSVE-HVLEAHTGPVQAVAVTPTDGVKIVSVGMTSKSLNPYDTSAPTELFGDPVVRVFDAR 203
            GV+++S+      SRGC+   T + LV+ P             ++TC  LN   PS      A S H+ VG   G +          S + L     L  +  + L       A +  + L   G+  G++   D  LRS  VE  +  AH+G +  V++   D   +V+ G++S+S+NPYD +AP +++ DP+V++FD R
Sbjct:  112 GVVAISDQMAVFRSRGCV--QTQAILVDTP------------RSITCGRLNLSDPS------ASSDHLLVGLDSGLL----------SAYDLHGYRPLHPLWTLDLYNATSALASSEDSSLQCAGSAIGQLDFFDGGLRSHRVEASIPNAHSGAI--VSMDMLDHY-VVTCGVSSRSINPYDKNAPVKIYPDPLVKLFDMR 279          
BLAST of mRNA_Ecto-sp13_S_contig12694.2228.1 vs. uniprot
Match: A0A024UA66_9STRA (Exonuclease domain-containing protein n=4 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UA66_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 4.980e-5
Identity = 63/243 (25.93%), Postives = 109/243 (44.86%), Query Frame = 0
Query:    7 GVLSVSNSAVRLHSRGCLLRATFSGLVEKPGVRGTPPTLHYPENLTCCALN-----SPSTMMGMGADSTHVTVGSFGGGVAGGIPGRSPPSLFQLDPVPGLRLVKAVGLPEEAGVTAIARGAMLTVGGNDGRIRLLDPRLRSTSVEHVLE-AHTGPVQAVAVTPTDGVKIVSVGMTSKSLNPYDTSAPTELFGDPVVRVFDAR-MPTRPGPPLQFSMLGAPRLVRFLADESLALASSSGQFLV 242
            GV+++S+ A  + SRGC+   T + +V+  G R           +TC +LN      PS ++ +G D+  ++     G                L P+  L L  +      A + +     ++  G + GR+   D   RS  V   +  AH+G +  + V       +++ G++S+S+NPYD  AP +++ DP+V++FD R M      P   S    P  V+F   E+   A+ +G  LV
Sbjct:  110 GVVAISDHAATIRSRGCV--QTHAIVVD--GAR----------QITCGSLNIHDPIKPSDVLLVGTDAGLLSAYDLHG-------------YHPLQPMWFLDLHVST-----AALASSDDSPLICAGSSQGRLDFFDGDHRSHRVAASIPLAHSGSIVTIDVMDN---YVLTCGISSRSINPYDKYAPVKIYPDPLVKLFDVRTMSLVSSIPFPSSTGLPPIFVKFHMSENAFYAADAGGDLV 317          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12694.2228.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G788_ECTSI6.100e-17198.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KX54_9PHAE1.090e-12788.75Exonuclease domain-containing protein n=1 Tax=Ecto... [more]
A0A6G0XRY2_9STRA4.090e-828.57Exonuclease domain-containing protein n=1 Tax=Apha... [more]
A0A485KVT7_9STRA8.510e-628.86Aste57867_12510 protein n=1 Tax=Aphanomyces stella... [more]
A0A024UA66_9STRA4.980e-525.93Exonuclease domain-containing protein n=4 Tax=Apha... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..244
e-value: 2.2E-25
score: 91.6
NoneNo IPR availablePANTHERPTHR15728UBIQUITIN SPECIFIC PROTEASE 52 / POLY A RIBONUCLEASE SUBUNIT PAN2coord: 2..241
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 114..238

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12694contigEcto-sp13_S_contig12694:2704..4966 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12694.2228.1mRNA_Ecto-sp13_S_contig12694.2228.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12694 2704..4966 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12694.2228.1 ID=prot_Ecto-sp13_S_contig12694.2228.1|Name=mRNA_Ecto-sp13_S_contig12694.2228.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=249bp
LTAFQQGVLSVSNSAVRLHSRGCLLRATFSGLVEKPGVRGTPPTLHYPEN
LTCCALNSPSTMMGMGADSTHVTVGSFGGGVAGGIPGRSPPSLFQLDPVP
GLRLVKAVGLPEEAGVTAIARGAMLTVGGNDGRIRLLDPRLRSTSVEHVL
EAHTGPVQAVAVTPTDGVKIVSVGMTSKSLNPYDTSAPTELFGDPVVRVF
DARMPTRPGPPLQFSMLGAPRLVRFLADESLALASSSGQFLVSKEPFTG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf