mRNA_Ecto-sp13_S_contig12694.2228.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12694.2228.1
Unique NamemRNA_Ecto-sp13_S_contig12694.2228.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12694.2228.1 vs. uniprot
Match: D7G788_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G788_ECTSI)

HSP 1 Score: 481 bits (1238), Expect = 6.100e-171
Identity = 246/249 (98.80%), Postives = 246/249 (98.80%), Query Frame = 1 
Query:    1 LTAFQQGVLSVSNSAVRLHSRGCLLRATFSGLVEKPGVRGTPPTLHYPENLTCCALNSPSTMMGMGADSTHVTVGSFGGGVAGGIPGRSPPSLFQLDPVPGLRLVKAVGLPEEAGVTAIARGAMLTVGGNDGRIRLLDPRLRSTSVEHVLEAHTGPVQAVAVTPTDGVKIVSVGMTSKSLNPYDTSAPTELFGDPVVRVFDARMPTRPGPPLQFSMLGAPRLVRFLADESLALASSSGQFLVSKEPFTG 747
            LTAFQQGVLSVSNSAVRLHSRGCLLRATFSGLVEKPGVRGTPPTLHYPENLTCCALNSPSTMMGMGADSTHVTVGSFGGG AGGIPG SPPSLFQLDPVPGLRLVKAVGLPEEAGVTAIARGAML VGGNDGRIRLLDPRLRSTSVEHVLEAHTGPVQAVAVTPTDGVKIVSVGMTSKSLNPYDTSAPTELFGDPVVRVFDARMPTRPGPPLQFSMLGAPRLVRFLADESLALASSSGQFLVSKEPFTG
Sbjct:   30 LTAFQQGVLSVSNSAVRLHSRGCLLRATFSGLVEKPGVRGTPPTLHYPENLTCCALNSPSTMMGMGADSTHVTVGSFGGGAAGGIPGGSPPSLFQLDPVPGLRLVKAVGLPEEAGVTAIARGAMLAVGGNDGRIRLLDPRLRSTSVEHVLEAHTGPVQAVAVTPTDGVKIVSVGMTSKSLNPYDTSAPTELFGDPVVRVFDARMPTRPGPPLQFSMLGAPRLVRFLADESLALASSSGQFLVSKEPFTG 278
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BLAST of mRNA_Ecto-sp13_S_contig12694.2228.1 vs. uniprot
Match: A0A6H5KX54_9PHAE (Exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX54_9PHAE)

HSP 1 Score: 405 bits (1041), Expect = 1.090e-127
Identity = 213/240 (88.75%), Postives = 214/240 (89.17%), Query Frame = 1 
Query:   97 VEKPGVRGTPPTLHYPENLTCCALNSPSTMMGMGADSTHVTVGSFGGGVAGGIPGRSPPSLFQLDPVPGLRLVKAVGLPEEAGVTAIARGAMLTVGGNDGRIRLLDPRLRSTSVEHVLEAHTGPVQAVAVTPTDGVK------------------------IVSVGMTSKSLNPYDTSAPTELFGDPVVRVFDARMPTRPGPPLQFSMLGAPRLVRFLADESLALASSSGQFLVSKEPFT 744
            VEKPGVRGTPPTLHYPENLTCCALNSPST+MGMGADSTHVTVGSFGGG AGGIPG SPPSLFQLDPVPGLRLVKAVGLPEEAGVTAIARGAMLTVGGNDGRIRLLDPRLRSTSVEHVLEAHTGPVQAVAVTPTDGVK                        IVSVGMTSKSLNPYDTSAPTELFGDPVVRVFDARMPTRPGPPLQFSMLGAPRLVRFLADESLALASSSGQFLVSKEPFT
Sbjct:    3 VEKPGVRGTPPTLHYPENLTCCALNSPSTIMGMGADSTHVTVGSFGGGAAGGIPGGSPPSLFQLDPVPGLRLVKAVGLPEEAGVTAIARGAMLTVGGNDGRIRLLDPRLRSTSVEHVLEAHTGPVQAVAVTPTDGVKSWQNNPPTTHSPEPYTYVPLDQTQIVSVGMTSKSLNPYDTSAPTELFGDPVVRVFDARMPTRPGPPLQFSMLGAPRLVRFLADESLALASSSGQFLVSKEPFT 242
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BLAST of mRNA_Ecto-sp13_S_contig12694.2228.1 vs. uniprot
Match: A0A6G0XRY2_9STRA (Exonuclease domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRY2_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 4.090e-8
Identity = 58/203 (28.57%), Postives = 97/203 (47.78%), Query Frame = 1 
Query:   16 QGVLSVSNSAVRLHSRGCLLRATFSGLVEKPGVRGTPPTLHYPENLTCCALNSPSTMMGMGADSTHVTVGSFGGGVAG-GIPGRSPPSLFQLDPVPGLRLVKAVGLPEEAGVTAIARG---AMLTVGGNDGRIRLLDPRLRSTSVE-HVLEAHTGPVQAVAVTPTDGVKIVSVGMTSKSLNPYDTSAPTELFGDPVVRVFDAR 609
            +GV+++S+      SRGC+       LVE P            +++TC  L  P T       S H+ VG   G +A   + G  P     L P+  +    A         TA+A     +    G + G++ L D  LRS  +E  +  AH+G V  V++   D   +++ G++S+S+NPYD +AP +++ DP++++FD R
Sbjct:   98 EGVVAISDQMAVFRSRGCVHNNAV--LVESP------------QSITCARLARPDTPKA----SDHLLVGLTSGNLAAYDLQGHHP-----LQPIWSMDFYNAT--------TALASSDDSSFACAGTSIGQLDLFDVNLRSRRIEASIPNAHSGSV--VSMDMIDNY-VLTCGVSSRSINPYDKNAPIKIYPDPLIKLFDLR 266
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BLAST of mRNA_Ecto-sp13_S_contig12694.2228.1 vs. uniprot
Match: A0A485KVT7_9STRA (Aste57867_12510 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KVT7_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 8.510e-6
Identity = 58/201 (28.86%), Postives = 95/201 (47.26%), Query Frame = 1 
Query:   19 GVLSVSNSAVRLHSRGCLLRATFSGLVEKPGVRGTPPTLHYPENLTCCALN--SPSTMMGMGADSTHVTVGSFGGGVAGGIPGRSPPSLFQLDPVPGLRLVKAVGLPEEAGVTAIARGAMLTVGGND-GRIRLLDPRLRSTSVE-HVLEAHTGPVQAVAVTPTDGVKIVSVGMTSKSLNPYDTSAPTELFGDPVVRVFDAR 609
            GV+++S+      SRGC+   T + LV+ P             ++TC  LN   PS      A S H+ VG   G +          S + L     L  +  + L       A +  + L   G+  G++   D  LRS  VE  +  AH+G +  V++   D   +V+ G++S+S+NPYD +AP +++ DP+V++FD R
Sbjct:  112 GVVAISDQMAVFRSRGCV--QTQAILVDTP------------RSITCGRLNLSDPS------ASSDHLLVGLDSGLL----------SAYDLHGYRPLHPLWTLDLYNATSALASSEDSSLQCAGSAIGQLDFFDGGLRSHRVEASIPNAHSGAI--VSMDMLDHY-VVTCGVSSRSINPYDKNAPVKIYPDPLVKLFDMR 279
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BLAST of mRNA_Ecto-sp13_S_contig12694.2228.1 vs. uniprot
Match: A0A024UA66_9STRA (Exonuclease domain-containing protein n=4 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UA66_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 4.980e-5
Identity = 63/243 (25.93%), Postives = 109/243 (44.86%), Query Frame = 1 
Query:   19 GVLSVSNSAVRLHSRGCLLRATFSGLVEKPGVRGTPPTLHYPENLTCCALN-----SPSTMMGMGADSTHVTVGSFGGGVAGGIPGRSPPSLFQLDPVPGLRLVKAVGLPEEAGVTAIARGAMLTVGGNDGRIRLLDPRLRSTSVEHVLE-AHTGPVQAVAVTPTDGVKIVSVGMTSKSLNPYDTSAPTELFGDPVVRVFDAR-MPTRPGPPLQFSMLGAPRLVRFLADESLALASSSGQFLV 726
            GV+++S+ A  + SRGC+   T + +V+  G R           +TC +LN      PS ++ +G D+  ++     G                L P+  L L  +      A + +     ++  G + GR+   D   RS  V   +  AH+G +  + V       +++ G++S+S+NPYD  AP +++ DP+V++FD R M      P   S    P  V+F   E+   A+ +G  LV
Sbjct:  110 GVVAISDHAATIRSRGCV--QTHAIVVD--GAR----------QITCGSLNIHDPIKPSDVLLVGTDAGLLSAYDLHG-------------YHPLQPMWFLDLHVST-----AALASSDDSPLICAGSSQGRLDFFDGDHRSHRVAASIPLAHSGSIVTIDVMDN---YVLTCGISSRSINPYDKYAPVKIYPDPLVKLFDVRTMSLVSSIPFPSSTGLPPIFVKFHMSENAFYAADAGGDLV 317
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12694.2228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G788_ECTSI6.100e-17198.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KX54_9PHAE1.090e-12788.75Exonuclease domain-containing protein n=1 Tax=Ecto... [more]
A0A6G0XRY2_9STRA4.090e-828.57Exonuclease domain-containing protein n=1 Tax=Apha... [more]
A0A485KVT7_9STRA8.510e-628.86Aste57867_12510 protein n=1 Tax=Aphanomyces stella... [more]
A0A024UA66_9STRA4.980e-525.93Exonuclease domain-containing protein n=4 Tax=Apha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12694contigEcto-sp13_S_contig12694:2704..4966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size747
Hectar predicted targeting categorymitochondrion
Exons4
Cds size747
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462677.8907006-CDS-Ecto-sp13_S_contig12694:2703..29431681462677.8907006-CDS-Ecto-sp13_S_contig12694:2703..2943Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12694 2704..2943 -
1681462677.9011934-CDS-Ecto-sp13_S_contig12694:3367..35091681462677.9011934-CDS-Ecto-sp13_S_contig12694:3367..3509Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12694 3368..3509 -
1681462677.9124095-CDS-Ecto-sp13_S_contig12694:4078..43471681462677.9124095-CDS-Ecto-sp13_S_contig12694:4078..4347Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12694 4079..4347 -
1681462677.9239614-CDS-Ecto-sp13_S_contig12694:4870..49661681462677.9239614-CDS-Ecto-sp13_S_contig12694:4870..4966Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12694 4871..4966 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12694.2228.1prot_Ecto-sp13_S_contig12694.2228.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12694 2704..4966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12694.2228.1

>prot_Ecto-sp13_S_contig12694.2228.1 ID=prot_Ecto-sp13_S_contig12694.2228.1|Name=mRNA_Ecto-sp13_S_contig12694.2228.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=249bp
LTAFQQGVLSVSNSAVRLHSRGCLLRATFSGLVEKPGVRGTPPTLHYPEN
LTCCALNSPSTMMGMGADSTHVTVGSFGGGVAGGIPGRSPPSLFQLDPVP
GLRLVKAVGLPEEAGVTAIARGAMLTVGGNDGRIRLLDPRLRSTSVEHVL
EAHTGPVQAVAVTPTDGVKIVSVGMTSKSLNPYDTSAPTELFGDPVVRVF
DARMPTRPGPPLQFSMLGAPRLVRFLADESLALASSSGQFLVSKEPFTG
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mRNA from alignment at Ecto-sp13_S_contig12694:2704..4966-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12694.2228.1 ID=mRNA_Ecto-sp13_S_contig12694.2228.1|Name=mRNA_Ecto-sp13_S_contig12694.2228.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2263bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12694:2704..4966- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCACCGCCTTCCAGCAAGGCGTGCTCTCGGTGTCGAACTCCGCCGTTCG
CCTGCACTCCAGAGGCTGCTTACTCCGTGCGACATTTTCCGGGCTGGTGA
GCGAGGGCTTAGATAGCTGTGTTGTTGTTGTTGTCGTTGTTGCTGCTGCT
GCTGCTGCTGTTGTATTTGTTGCTGTTGTTGTTGCTGTTGCTGCTGCTGT
TGTTGCTTTGTTGCTGTTGATTGCTGTTGTTGTTGTTGTCGTTGTTGCTG
CTGCTGCTGCTGCTGCTGCTACTGCTGCTGCTGCTGTTTTTGTTGGTGGT
GTTGCTGCTGCTACTGCTGCTGTTCTCTGCTCCCCGTGCCACGACTGCCC
TCTATCCCCCCTCCCCCAATTCGATGCTGCTCCTGCTGCTTCCTGCTCCG
CTTGCCACCACTGCCCTCTTTCCCCCCTCCCACAATTCGATGCCGCCCAA
TACGGCCGTAGACCAGACGTTGGTTGTACAAGACGTTATTTAATTTTTTT
ACCATGAGGATAGGCACGGCGTTGTTCCTTCTTGAATTGGACAAGTGGTC
GAGCCGAGGCACACAAACAAGTTTTAGCGCATGCTCCCCTCCCCTCCTCC
CCCCCCCCCGACACCCAAGGTGGAGAAACCCGGCGTGCGGGGCACACCAC
CCACCCTGCACTACCCCGAGAATCTCACGTGCTGCGCGCTCAACTCCCCC
TCCACGATGATGGGCATGGGCGCCGACTCGACCCACGTAACGGTCGGCTC
CTTCGGAGGGGGCGTCGCGGGCGGGATCCCTGGGAGGTCCCCTCCCTCCC
TCTTTCAGCTGGACCCGGTGCCGGGCCTGCGGCTAGTGAAGGCGGTGGGG
CTGCCGGAGGAGGCGGGGGTTACGGCGATTGCTCGCGGGTGAGTTTCACT
GTTAATATATGGGCGGGAGGGGAGTGGGGGAGGGGGTACCGTCAGCGCCC
GCACACAGAAGAACCGCTGCTTATTTCGGCCGAGGCTCGTTACATATTTT
GTGTATGGGGGTATCTATCCGAACAGCGACGATATCGGTTTTCGTGAATG
CCTCTTGACTGAACATGTGTTCGAAAAGTTTCTATTTTTTTCTTAGCTCC
CAATTTTTGGAAGTGCGGGCGCTAGCTGAACTCCTCCTGATCACGGGTGC
TGCTTTGCTCGAAGCTTGTTTTTTGTATGTATCACGGAGCGCCCGAGCGT
TTTTCGAGCGGTCGCTGGACCGTGAGGCAACATGTTTTGTGTTGTGCGTG
TGCACCACTTTTTTTCTTCTGCCTGTGTGACTTTCCTCTCAGCTGATACG
TCAAATATATACGCCGAAAGACGTGCAGAGGGGCGCCCGAACAGATGTAA
CGAACAATCACAAACGCACGTCTTTTTGCATGGTCAACCGGTTAATGCGG
TCGATGCTGATACCTGTAACACACAAGCATGTTTCGTTTTTTTGCTGTTT
CGTGCAGCGCCATGCTGACGGTAGGCGGCAACGACGGGCGCATCCGGCTG
CTGGACCCGCGCCTCCGCAGCACTAGCGTCGAGCACGTCCTCGAGGCGCA
CACCGGCCCGGTGCAGGCGGTGGCCGTGACGCCTACCGACGGCGTCAAGG
TGAGTGATGGCGTCATAGTCATCAAACCTTTTTTTTTGTTCAATTGTTTG
TGGAAGACGCGAGACTTGTTTGGTTGTAGTGCCGTCCAAGACGAAAAGAC
ATCAGCAGTTACTTGGTTTTTTCCTTCAAGTTTTCGTAACGTTTTGTTTT
GAATTTTTGTAATTGTTTTTGTCATCTTCGGCTGCGTGCTTTTTCGTGTT
TTTTTACTGTTTCTGGGTGCTTTTTTAGTTTTTATCGTCGAAAAGAAAAC
ACTCATGTTTCGTAACGTGCGACTTTCGGATGTCTTGTTTGTGCGGATGC
ATCATGCGTAGAGTAACCAACCAACACCTCGCCCGCCCGCCATGATACTG
TCCTGGCAAAATTATCCCCCCGCAAACCCACTCCCCTTAATCGTACACAT
ACGTCCCTCCCGATCAAACTCAGATCGTATCCGTGGGGATGACGTCCAAG
TCCCTCAACCCGTACGACACCTCCGCCCCGACCGAGCTCTTCGGCGACCC
CGTAGTGAGGGTGTTCGACGCTAGGATGCCGACGAGGCCCGGGCCGCCGC
TGCAGTTCAGCATGCTGGGGGCCCCGCGGCTGGTGCGGTTCCTGGCGGAC
GAGAGCCTGGCCCTCGCCTCGTCATCTGGGCAGTTCCTGGTGTCCAAGGA
GCCCTTCACCGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12694:2704..4966-

>mRNA_Ecto-sp13_S_contig12694.2228.1 ID=mRNA_Ecto-sp13_S_contig12694.2228.1|Name=mRNA_Ecto-sp13_S_contig12694.2228.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=747bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12694:2704..4966- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCACCGCCTTCCAGCAAGGCGTGCTCTCGGTGTCGAACTCCGCCGTTCG
CCTGCACTCCAGAGGCTGCTTACTCCGTGCGACATTTTCCGGGCTGGTGG
AGAAACCCGGCGTGCGGGGCACACCACCCACCCTGCACTACCCCGAGAAT
CTCACGTGCTGCGCGCTCAACTCCCCCTCCACGATGATGGGCATGGGCGC
CGACTCGACCCACGTAACGGTCGGCTCCTTCGGAGGGGGCGTCGCGGGCG
GGATCCCTGGGAGGTCCCCTCCCTCCCTCTTTCAGCTGGACCCGGTGCCG
GGCCTGCGGCTAGTGAAGGCGGTGGGGCTGCCGGAGGAGGCGGGGGTTAC
GGCGATTGCTCGCGGCGCCATGCTGACGGTAGGCGGCAACGACGGGCGCA
TCCGGCTGCTGGACCCGCGCCTCCGCAGCACTAGCGTCGAGCACGTCCTC
GAGGCGCACACCGGCCCGGTGCAGGCGGTGGCCGTGACGCCTACCGACGG
CGTCAAGATCGTATCCGTGGGGATGACGTCCAAGTCCCTCAACCCGTACG
ACACCTCCGCCCCGACCGAGCTCTTCGGCGACCCCGTAGTGAGGGTGTTC
GACGCTAGGATGCCGACGAGGCCCGGGCCGCCGCTGCAGTTCAGCATGCT
GGGGGCCCCGCGGCTGGTGCGGTTCCTGGCGGACGAGAGCCTGGCCCTCG
CCTCGTCATCTGGGCAGTTCCTGGTGTCCAAGGAGCCCTTCACCGGT
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