mRNA_Ecto-sp13_S_contig1269.2227.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1269.2227.1
Unique NamemRNA_Ecto-sp13_S_contig1269.2227.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1269.2227.1 vs. uniprot
Match: D8LE01_ECTSI (HA2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE01_ECTSI)

HSP 1 Score: 394 bits (1013), Expect = 2.470e-137
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 1 
Query:    4 DREEESDAAREKFFVPESDHLTLLNVFQQWKLNNFGSQWCTDHFIHVKGLRKAREVHAQLLDIMRQQRIGHESCGQANWDTVRKAICSAYFYNSAKIKGIGEYVNMLTGMPCALHPSSALSGLGYTPDYVTYHELIFTTKEYMTNVTAVEAEWLAELGPMFFSVKESYKTRLEKRVREREDKARMEVEMKEAEEK 588
            DREEESDAAREKFFVPESDHLTLLNVFQQWKLNNFGSQWCTDHFIHVKGLRKAREVHAQLLDIMRQQRIGHESCGQANWDTVRKAICSAYFYNSAKIKGIGEYVNMLTGMPCALHPSSALSGLGYTPDYVTYHELIFTTKEYMTNVTAVEAEWLAELGPMFFSVKESYKTRLEKRVREREDKARMEVEMKEAEEK
Sbjct:  105 DREEESDAAREKFFVPESDHLTLLNVFQQWKLNNFGSQWCTDHFIHVKGLRKAREVHAQLLDIMRQQRIGHESCGQANWDTVRKAICSAYFYNSAKIKGIGEYVNMLTGMPCALHPSSALSGLGYTPDYVTYHELIFTTKEYMTNVTAVEAEWLAELGPMFFSVKESYKTRLEKRVREREDKARMEVEMKEAEEK 299
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BLAST of mRNA_Ecto-sp13_S_contig1269.2227.1 vs. uniprot
Match: A0A835ZC27_9STRA (Asp-Glu-Ala-His box polypeptide 38, isoform CRA_d n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC27_9STRA)

HSP 1 Score: 320 bits (819), Expect = 6.100e-101
Identity = 152/188 (80.85%), Postives = 169/188 (89.89%), Query Frame = 1 
Query:    7 REEESDAAREKFFVPESDHLTLLNVFQQWKLNNFGSQWCTDHFIHVKGLRKAREVHAQLLDIMRQQRIGHESCGQANWDTVRKAICSAYFYNSAKIKGIGEYVNMLTGMPCALHPSSALSGLGYTPDYVTYHELIFTTKEYMTNVTAVEAEWLAELGPMFFSVKESYKTRLEKRVREREDKARMEVEM 570
            REEESDAAREKFFVPESDHLTLLNV+QQW+  N+ +QWCTDHF+HVKGLRKAREVHAQLLDI++QQRI H S G A WD+VRKAICSAYFYN+AKIKG+GEYVNMLTGMPC LHPSSAL GLGYTPD+  YHELI+T+KEYMT VTAVE EWLAELGPMFFSVKES K+RLEKR RE E+K +M+ EM
Sbjct:  650 REEESDAAREKFFVPESDHLTLLNVYQQWRQQNYAAQWCTDHFVHVKGLRKAREVHAQLLDILKQQRIQHVSTGGAGWDSVRKAICSAYFYNAAKIKGVGEYVNMLTGMPCHLHPSSALYGLGYTPDFTCYHELIYTSKEYMTTVTAVEGEWLAELGPMFFSVKESLKSRLEKRKREAEEKVKMDAEM 837
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BLAST of mRNA_Ecto-sp13_S_contig1269.2227.1 vs. uniprot
Match: A0A7S3UNY1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UNY1_HETAK)

HSP 1 Score: 303 bits (777), Expect = 2.620e-99
Identity = 144/185 (77.84%), Postives = 162/185 (87.57%), Query Frame = 1 
Query:    4 DREEESDAAREKFFVPESDHLTLLNVFQQWKLNNFGSQWCTDHFIHVKGLRKAREVHAQLLDIMRQQRIGHESCGQANWDTVRKAICSAYFYNSAKIKGIGEYVNMLTGMPCALHPSSALSGLGYTPDYVTYHELIFTTKEYMTNVTAVEAEWLAELGPMFFSVKESYKTRLEKRVREREDKARM 558
            DREEESDAARE+FFVPESDHLTLLNV+ QWK N++  QWCT+HFIH K L+K REVHAQLLDI++QQRI H SCG  +WD VRKAICS YFYNSAKIKGIGEYVNMLTG+PC LHPSSAL GLGYTPD+  YHELI T+KEYMT  TAVE EWLAELGPMFF+VKESYKTR++KR +E+EDK +M
Sbjct:  219 DREEESDAARERFFVPESDHLTLLNVYHQWKQNHYSPQWCTEHFIHGKALKKCREVHAQLLDILQQQRIPHTSCG-GSWDVVRKAICSGYFYNSAKIKGIGEYVNMLTGIPCHLHPSSALYGLGYTPDFTCYHELIMTSKEYMTTTTAVEGEWLAELGPMFFTVKESYKTRIQKRKKEQEDKLKM 402
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BLAST of mRNA_Ecto-sp13_S_contig1269.2227.1 vs. uniprot
Match: A0A7S2NUI9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NUI9_9STRA)

HSP 1 Score: 293 bits (751), Expect = 4.120e-97
Identity = 143/191 (74.87%), Postives = 168/191 (87.96%), Query Frame = 1 
Query:    4 DREEESDAAREKFFVPESDHLTLLNVFQQWKLNNFGSQWCTDHFIHVKGLRKAREVHAQLLDIMRQQRIGHESCGQANWDTVRKAICSAYFYNSAKIKGIGEYVNMLTGMPCALHPSSALSGLGYTPDYVTYHELIFTTKEYMTNVTAVEAEWLAELGPMFFSVKESYKTRLEKRVREREDKARMEVEMKE 576
            DREEESDAAREKFFVPESDHLTLLNV+Q+ K N F +QWCT+HFIH KG+RKAREVHAQL D+M+QQ++  +SCG  +WD +RK+ICSAYFYNS+KIKGIGEY+NML+G+P ALHPSSAL GLGYTPDYV YHELI T+KEYM+ VTAVE EWLAELGPMFFS+KESY++ L++R RER + A ME EMKE
Sbjct:  123 DREEESDAAREKFFVPESDHLTLLNVYQRAKQNKFDAQWCTNHFIHAKGIRKAREVHAQLFDLMKQQKLYPKSCG-GSWDVIRKSICSAYFYNSSKIKGIGEYINMLSGIPSALHPSSALYGLGYTPDYVCYHELISTSKEYMSCVTAVEGEWLAELGPMFFSIKESYESTLKRRQRERLNAANMEREMKE 312
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BLAST of mRNA_Ecto-sp13_S_contig1269.2227.1 vs. uniprot
Match: A0A425DPP5_9STRA (HA2 domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425DPP5_9STRA)

HSP 1 Score: 290 bits (741), Expect = 1.820e-94
Identity = 140/189 (74.07%), Postives = 161/189 (85.19%), Query Frame = 1 
Query:    4 DREEESDAAREKFFVPESDHLTLLNVFQQWKLNNFGSQWCTDHFIHVKGLRKAREVHAQLLDIMRQQRIGHESCGQANWDTVRKAICSAYFYNSAKIKGIGEYVNMLTGMPCALHPSSALSGLGYTPDYVTYHELIFTTKEYMTNVTAVEAEWLAELGPMFFSVKESYKTRLEKRVREREDKARMEVEM 570
            DREEESDAAREKFFVPESDHLTLLNV++ W+ NN+   W  DH+IH KG+RKAREV  QL+DIM+QQ++   +CG  +WD VRKAICSAYFYNSA+IKGIGEYVNMLTGMPC LHPSS+L GLGYTPD+V YHELI+TTKEYM   T+VE EWLAELGPMFFSVKESYK+RL KR +ER ++A ME EM
Sbjct:  193 DREEESDAAREKFFVPESDHLTLLNVYKMWEANNYSQAWANDHYIHSKGMRKAREVREQLVDIMKQQKMPLTTCG-THWDVVRKAICSAYFYNSAQIKGIGEYVNMLTGMPCNLHPSSSLFGLGYTPDFVVYHELIYTTKEYMQCATSVEGEWLAELGPMFFSVKESYKSRLLKRAKERHERADMEHEM 380
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BLAST of mRNA_Ecto-sp13_S_contig1269.2227.1 vs. uniprot
Match: K3X7W9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7W9_GLOUD)

HSP 1 Score: 303 bits (775), Expect = 5.990e-94
Identity = 146/189 (77.25%), Postives = 165/189 (87.30%), Query Frame = 1 
Query:    4 DREEESDAAREKFFVPESDHLTLLNVFQQWKLNNFGSQWCTDHFIHVKGLRKAREVHAQLLDIMRQQRIGHESCGQANWDTVRKAICSAYFYNSAKIKGIGEYVNMLTGMPCALHPSSALSGLGYTPDYVTYHELIFTTKEYMTNVTAVEAEWLAELGPMFFSVKESYKTRLEKRVREREDKARMEVEM 570
            DREEESDAAREKFFVPESDHLTLLNV+ QWK+N + SQWC+DHFIHVKGLRKAREV  QL+DIM+QQ++   SCG  +WD VRKAICSAYFYNSA++KGIGEYVNMLTGMPC LHPS+AL GLGYTPD+V YHELI+TTKEYM   TAVE EWLAELGPMFFSVKESYK+RL KR++E+ +   ME EM
Sbjct:  730 DREEESDAAREKFFVPESDHLTLLNVYNQWKMNQYSSQWCSDHFIHVKGLRKAREVREQLVDIMKQQKVALRSCG-GSWDVVRKAICSAYFYNSAQMKGIGEYVNMLTGMPCNLHPSAALFGLGYTPDFVVYHELIYTTKEYMQCTTAVEGEWLAELGPMFFSVKESYKSRLLKRMKEQAEAKSMEQEM 917
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BLAST of mRNA_Ecto-sp13_S_contig1269.2227.1 vs. uniprot
Match: A0A8K1C813_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C813_PYTOL)

HSP 1 Score: 303 bits (775), Expect = 6.090e-94
Identity = 146/189 (77.25%), Postives = 164/189 (86.77%), Query Frame = 1 
Query:    4 DREEESDAAREKFFVPESDHLTLLNVFQQWKLNNFGSQWCTDHFIHVKGLRKAREVHAQLLDIMRQQRIGHESCGQANWDTVRKAICSAYFYNSAKIKGIGEYVNMLTGMPCALHPSSALSGLGYTPDYVTYHELIFTTKEYMTNVTAVEAEWLAELGPMFFSVKESYKTRLEKRVREREDKARMEVEM 570
            DREEESDA REKFFVPESDHLTLLNV+ QWK+N + SQWCT+HFIH KGLRKAREV  QL+DIM+QQ++   SCG   WD VRKAICSAYFYNSA+IKGIGEYVNMLTGMPC LHPS+AL GLGYTPD+V YHELI+TTKEYM   TAVE EWLAELGPMFFSVKESYK+RL KR++E+E+   ME+EM
Sbjct:  729 DREEESDACREKFFVPESDHLTLLNVYNQWKMNKYSSQWCTEHFIHAKGLRKAREVREQLVDIMKQQKVRLVSCG-GTWDVVRKAICSAYFYNSAQIKGIGEYVNMLTGMPCNLHPSAALFGLGYTPDFVVYHELIYTTKEYMQCATAVEGEWLAELGPMFFSVKESYKSRLLKRMKEQEESKSMELEM 916
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BLAST of mRNA_Ecto-sp13_S_contig1269.2227.1 vs. uniprot
Match: A0A5D6YET3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YET3_9STRA)

HSP 1 Score: 303 bits (777), Expect = 5.720e-92
Identity = 149/189 (78.84%), Postives = 162/189 (85.71%), Query Frame = 1 
Query:    4 DREEESDAAREKFFVPESDHLTLLNVFQQWKLNNFGSQWCTDHFIHVKGLRKAREVHAQLLDIMRQQRIGHESCGQANWDTVRKAICSAYFYNSAKIKGIGEYVNMLTGMPCALHPSSALSGLGYTPDYVTYHELIFTTKEYMTNVTAVEAEWLAELGPMFFSVKESYKTRLEKRVREREDKARMEVEM 570
            DREEESDAAREKFFVPESDHLTLLNVF QWKLN + SQWC DHFIHVKGLRKAREV  QL+DIM+ QR+   SC  A WD VRKAICSAYFYNSA++KGIGEYVNMLTGMPC LHPS+AL GLGYTPD+V YHELI+TTKEYM   TAVE EWLAELGPMFFSVKESYK+RL KR++ER +   ME EM
Sbjct: 1760 DREEESDAAREKFFVPESDHLTLLNVFNQWKLNQYSSQWCADHFIHVKGLRKAREVREQLVDIMKHQRVALRSCDGA-WDVVRKAICSAYFYNSAQMKGIGEYVNMLTGMPCNLHPSAALFGLGYTPDFVVYHELIYTTKEYMQCTTAVEGEWLAELGPMFFSVKESYKSRLLKRMKERAEAESMEAEM 1947
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BLAST of mRNA_Ecto-sp13_S_contig1269.2227.1 vs. uniprot
Match: A0A7S1CEV0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CEV0_9STRA)

HSP 1 Score: 278 bits (711), Expect = 7.050e-92
Identity = 135/186 (72.58%), Postives = 154/186 (82.80%), Query Frame = 1 
Query:    4 DREEESDAAREKFFVPESDHLTLLNVFQQWKLNNFGSQWCTDHFIHVKGLRKAREVHAQLLDIMRQQRIGHESCGQANWDTVRKAICSAYFYNSAKIKGIGEYVNMLTGMPCALHPSSALSGLGYTPDYVTYHELIFTTKEYMTNVTAVEAEWLAELGPMFFSVKESYKTRLEKRVREREDKARME 561
            DRE ESDAAREKFFVPESDHLTLLNV+QQWK N +   W T+H+IH K ++KAREV  QLLDIM+ QRI   SCG A WD VRKAIC+AYFYNSA+IKGIGEY NML GMPC LHPSS+L GLGYTPDY+ YHELI+T+KEYM  VTAV+AEWLAELGPMFFSVKES + R+ KR  E+ ++A ME
Sbjct:   60 DREAESDAAREKFFVPESDHLTLLNVYQQWKKNGYSQMWATEHYIHGKAMKKAREVRGQLLDIMKSQRITVVSCGAA-WDVVRKAICAAYFYNSARIKGIGEYQNMLNGMPCNLHPSSSLFGLGYTPDYICYHELIYTSKEYMQCVTAVDAEWLAELGPMFFSVKESAEARIAKRAAEKRERAEME 244
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BLAST of mRNA_Ecto-sp13_S_contig1269.2227.1 vs. uniprot
Match: H3G7A2_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=H3G7A2_PHYRM)

HSP 1 Score: 295 bits (754), Expect = 2.510e-91
Identity = 142/189 (75.13%), Postives = 162/189 (85.71%), Query Frame = 1 
Query:    4 DREEESDAAREKFFVPESDHLTLLNVFQQWKLNNFGSQWCTDHFIHVKGLRKAREVHAQLLDIMRQQRIGHESCGQANWDTVRKAICSAYFYNSAKIKGIGEYVNMLTGMPCALHPSSALSGLGYTPDYVTYHELIFTTKEYMTNVTAVEAEWLAELGPMFFSVKESYKTRLEKRVREREDKARMEVEM 570
            DREEESDAAREKFFVPESDHLTLLNV+QQW+ N   +QWC+DHFIH KGLRKAREV  QL+DIM+QQ +   SCG   WD +RKAICSAYFYNSA+IKGIGEYVNMLTGMPC LHPS+AL GLGYTPD+V YHELI+T+KEYM   TAVE EWLAELGPMFFSVKES+++RL KR++E+E+   ME EM
Sbjct:  681 DREEESDAAREKFFVPESDHLTLLNVYQQWEANRHSAQWCSDHFIHAKGLRKAREVREQLVDIMKQQHVRLRSCG-GRWDVIRKAICSAYFYNSAQIKGIGEYVNMLTGMPCNLHPSAALFGLGYTPDFVVYHELIYTSKEYMQCATAVEGEWLAELGPMFFSVKESFQSRLLKRMKEKEEAIEMEHEM 868
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1269.2227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE01_ECTSI2.470e-137100.00HA2 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZC27_9STRA6.100e-10180.85Asp-Glu-Ala-His box polypeptide 38, isoform CRA_d ... [more]
A0A7S3UNY1_HETAK2.620e-9977.84Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2NUI9_9STRA4.120e-9774.87Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A425DPP5_9STRA1.820e-9474.07HA2 domain-containing protein (Fragment) n=1 Tax=A... [more]
K3X7W9_GLOUD5.990e-9477.25Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1C813_PYTOL6.090e-9477.25Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6YET3_9STRA5.720e-9278.84Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S1CEV0_9STRA7.050e-9272.58Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
H3G7A2_PHYRM2.510e-9175.13Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1269contigEcto-sp13_S_contig1269:15034..17284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score394.0
Seed ortholog evalue4e-107
Seed eggNOG ortholog2880.D8LE01
Preferred nameDHX38
Model size591
KEGG koko:K12815
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000350,GO:0000375,GO:0000377,GO:0000378,GO:0000381,GO:0000393,GO:0000394,GO:0000398,GO:0002376,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006952,GO:0006955,GO:0007275,GO:0007389,GO:0007530,GO:0008026,GO:0008104,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009605,GO:0009607,GO:0009620,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009814,GO:0009817,GO:0009888,GO:0009892,GO:0009893,GO:0009987,GO:0010015,GO:0010033,GO:0010051,GO:0010053,GO:0010054,GO:0010154,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016049,GO:0016070,GO:0016071,GO:0016246,GO:0016441,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018992,GO:0019219,GO:0019222,GO:0021700,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0022622,GO:0030154,GO:0031047,GO:0031050,GO:0031053,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033120,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034660,GO:0035194,GO:0035195,GO:0035196,GO:0040007,GO:0040021,GO:0040022,GO:0040029,GO:0042221,GO:0042623,GO:0042886,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043331,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045087,GO:0045184,GO:0045935,GO:0046483,GO:0046907,GO:0048024,GO:0048316,GO:0048364,GO:0048468,GO:0048469,GO:0048518,GO:0048519,GO:0048522,GO:0048588,GO:0048589,GO:0048608,GO:0048731,GO:0048764,GO:0048765,GO:0048767,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050684,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051254,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060560,GO:0061458,GO:0065003,GO:0065007,GO:0070013,GO:0070035,GO:0070727,GO:0070887,GO:0070918,GO:0071007,GO:0071013,GO:0071166,GO:0071310,GO:0071359,GO:0071407,GO:0071426,GO:0071427,GO:0071695,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0080090,GO:0080147,GO:0090304,GO:0090558,GO:0090627,GO:0097159,GO:0098542,GO:0099402,GO:0140098,GO:1901360,GO:1901363,GO:1901698,GO:1901699,GO:1902494,GO:1903311,GO:1905392,GO:1990904
Exons4
EggNOG free text desc.ATP-dependent RNA helicase activity
EggNOG OGsCOG1643@1,KOG0924@2759
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-23_003130.1
EC3.6.4.13
Cds size591
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462677.8205996-CDS-Ecto-sp13_S_contig1269:15033..151801681462677.8205996-CDS-Ecto-sp13_S_contig1269:15033..15180Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1269 15034..15180 -
1681462677.8322644-CDS-Ecto-sp13_S_contig1269:15678..157941681462677.8322644-CDS-Ecto-sp13_S_contig1269:15678..15794Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1269 15679..15794 -
1681462677.8406084-CDS-Ecto-sp13_S_contig1269:16551..166991681462677.8406084-CDS-Ecto-sp13_S_contig1269:16551..16699Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1269 16552..16699 -
1681462677.8522742-CDS-Ecto-sp13_S_contig1269:17104..172841681462677.8522742-CDS-Ecto-sp13_S_contig1269:17104..17284Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1269 17105..17284 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1269.2227.1prot_Ecto-sp13_S_contig1269.2227.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1269 15034..17284 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1269.2227.1

>prot_Ecto-sp13_S_contig1269.2227.1 ID=prot_Ecto-sp13_S_contig1269.2227.1|Name=mRNA_Ecto-sp13_S_contig1269.2227.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=197bp
QDREEESDAAREKFFVPESDHLTLLNVFQQWKLNNFGSQWCTDHFIHVKG
LRKAREVHAQLLDIMRQQRIGHESCGQANWDTVRKAICSAYFYNSAKIKG
IGEYVNMLTGMPCALHPSSALSGLGYTPDYVTYHELIFTTKEYMTNVTAV
EAEWLAELGPMFFSVKESYKTRLEKRVREREDKARMEVEMKEAEEK*
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mRNA from alignment at Ecto-sp13_S_contig1269:15034..17284-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1269.2227.1 ID=mRNA_Ecto-sp13_S_contig1269.2227.1|Name=mRNA_Ecto-sp13_S_contig1269.2227.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2251bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1269:15034..17284- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGATCGGGAGGAGGAGTCCGACGCGGCGAGGGAGAAGTTCTTCGTGCC
GGAGAGTGATCACCTCACCCTCCTCAACGTCTTCCAGCAGTGGAAGCTCA
ACAACTTCGGCTCCCAGTGGTGCACCGACCACTTCATTCACGTCAAGGGG
CTGCGAAAAGCGCGGGAGGTTCATGCGCAGGTCAGGGTTGTTGCTTCGCA
AGCAACAATCATCTTTGTTTGATACCCCCCTGTCACAACGTTTCTCGCCG
CCCCAGTACGGCACATCCATTCGGAAACTTGCTTGCCAAAATATACAATT
TTGGAACTCATCGTGTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCC
CCCCTTTTTCCCCCTCCTTCCTTCTCTTGTTTTCTCTTTTGTTTGTTCTG
TTTTTTTTTTTTNNNNNNNNNNGCGCGCTTGCCCGCCGCCGGCTCGGGAA
TTTCTTTTCCCAAAAACAAATATTTTGTACCTGCTGGTGGCCCCCCCCCC
CCCCCCCCCCATCGTTCATCCCCTTCACTATTTCTTCCTCTCCGGTTGGC
GTTTGTTCCTGCGTGTGTGTGCGTGTGTTTTGCAGCTGCTGGACATCATG
CGGCAGCAGCGCATCGGTCACGAGTCGTGCGGGCAGGCGAACTGGGACAC
CGTTCGCAAGGCCATCTGCTCGGCGTACTTCTACAACAGCGCCAAGATCA
AGGGCATCGGGGAGTACGTCAACATGCTTACCGGTGCGTCATCAAGGGCA
GGCGGTCGACACACGTCGCTTGTTTTCTCTCCGTCTCCTCTCGGGGCCCG
CCACCATGGTTTCATCTTTTTGCCGTCTTTCGCGGGATTGTCTACCCCCC
CCCACGACGGTTTTTGCCTGTAACTCTGGTTTGTGCTGTCGACCTTCACT
GCGTGTTCATGTCGAGACTTAGTTTGTGTCGTCTCATCGCTAGCTAGCAC
GTACGCACTCCGCTTCCCCCCGCCTGACACATGCGTGTGTATGTCTCTCT
CTCGCTTTCTCTTGGTCTCTGCAACACGATCAAGATCATGCCTAGCCTCC
GCCCTACAATGCCTGCGTCGTGATTAGCTTCCCTTTCGTGAACCCTCTCT
CTACGAGCGCATCGGTACAAGTGTGACCACCCACGAGTACGAAATGCACG
CACACGACATCTACTCTGCATATCTTTGGGCGGAACTCTAGTCTAGACCC
CGAGGGGCGGCGTTTGACCTTTTGGTTTCGCTGGGGTTGCGGCTGTTGTG
GCCTTCGAATCAAGCGAAGAACAGCGACACTTGCTCCGTCAATAATGGAG
TCGCCGTGGCAGTCAGCGCACCGATGATCCAGGCATGGCATCTAGACCGC
AATCCAGACGTGGTATCGAGGACATGATCCAGACATGGTGTCCAGATGCT
TCCGCTGCTGAATACGCTGCCGCTCTGCTGAGCACTTCCCTCAACCCCCC
TCCCAACCTTTTTTTTTATGCCTCTGTCTTGCGCTTCCAGGTATGCCCTG
CGCGCTGCACCCTTCTTCCGCGCTGTCGGGGCTGGGCTACACCCCGGACT
ACGTGACCTACCACGAGCTGATCTTCACCACCAAGGAGTACATGACCAAC
GTCACCGTAAGCACCAACAATTAACTGCCGAAATGAGGGGGCCTGGGGTT
AACAGAACAGACCAAAGAAAGAGGCGCAGCTTTTGTGTGCTCGAAATGTT
GCTGCTTTTTCAGGGGGTCCTCGCTCGCTGCGAAAGGCGTTCGCTGGTTC
GAGGTCACTTGCAAGCGGTGACCCACCCTCCCTCGTCTGGTTGACGCAAG
AAAAGTACCACAGTATCGCTGGGTGGATTTTCAACAGTCGTGAAGGGGCG
ATAGGGACTGAGGGGCTGCCAGAGTTTCGAGACCACATCGGCTTGTGTTC
GTGCACAAGATCTCGGCCGAACGTGGTACCCCCTCCCGCGCCTAACAGGA
ATGGTCAGACATTCCTGTACGACCGCCCTAAACACGATGCCCCCCAAGCT
CCAGCCACAAGTCCCCCGCTTGACTTGAATGCAAACTGTAACACCGTCTG
GCGTGTTTTTTTGTCGTTGTTGTGCCGCCACGGCCGCCGTTTGTCGACGG
ACAGGCGGTTGAGGCGGAATGGCTGGCGGAGCTGGGGCCCATGTTTTTCT
CGGTGAAGGAGTCGTACAAGACCAGGCTCGAGAAGCGCGTTCGCGAGAGG
GAGGACAAGGCCCGCATGGAGGTCGAGATGAAGGAAGCCGAAGAAAAGTA
A
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1269:15034..17284-

>mRNA_Ecto-sp13_S_contig1269.2227.1 ID=mRNA_Ecto-sp13_S_contig1269.2227.1|Name=mRNA_Ecto-sp13_S_contig1269.2227.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=591bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1269:15034..17284- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGATCGGGAGGAGGAGTCCGACGCGGCGAGGGAGAAGTTCTTCGTGCC
GGAGAGTGATCACCTCACCCTCCTCAACGTCTTCCAGCAGTGGAAGCTCA
ACAACTTCGGCTCCCAGTGGTGCACCGACCACTTCATTCACGTCAAGGGG
CTGCGAAAAGCGCGGGAGGTTCATGCGCAGCTGCTGGACATCATGCGGCA
GCAGCGCATCGGTCACGAGTCGTGCGGGCAGGCGAACTGGGACACCGTTC
GCAAGGCCATCTGCTCGGCGTACTTCTACAACAGCGCCAAGATCAAGGGC
ATCGGGGAGTACGTCAACATGCTTACCGGTATGCCCTGCGCGCTGCACCC
TTCTTCCGCGCTGTCGGGGCTGGGCTACACCCCGGACTACGTGACCTACC
ACGAGCTGATCTTCACCACCAAGGAGTACATGACCAACGTCACCGCGGTT
GAGGCGGAATGGCTGGCGGAGCTGGGGCCCATGTTTTTCTCGGTGAAGGA
GTCGTACAAGACCAGGCTCGAGAAGCGCGTTCGCGAGAGGGAGGACAAGG
CCCGCATGGAGGTCGAGATGAAGGAAGCCGAAGAAAAGTAA
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