mRNA_Ecto-sp13_S_contig1269.2226.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1269.2226.1
Unique NamemRNA_Ecto-sp13_S_contig1269.2226.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1269.2226.1 vs. uniprot
Match: D8LE00_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE00_ECTSI)

HSP 1 Score: 282 bits (722), Expect = 4.650e-95
Identity = 144/181 (79.56%), Postives = 152/181 (83.98%), Query Frame = 1 
Query:    1 RHPLSRMRQRQLSRGVEATLVFPGLGGISKKRRPVILYTEDNGESICWIKTGANGSGEPYRIRCKTLLEVKDKSGAGSKAESPATVARCGGESHEVEGAFGSEFDEQEXXXXXXXXXXXXXXXXXXXXXXXAGVRINLKWLPQPTWSKRTVKLVDVQTACPGVFTRGMQQLLSFNSDLQSY 543
            RHPL+R+RQRQLSRGVEATLVFPG GGISKKRRPVILYTEDNGESICWIKTGANGSGEPYRIRCKTLLEV+DKSGAGS AESPATVA  GGE HEVEGAFGSE+ EQ+                       AGVRINLKWLPQPTWS+RTVKLVDVQTACPG+FTRGMQQLLSFN+DLQSY
Sbjct:    4 RHPLARVRQRQLSRGVEATLVFPGFGGISKKRRPVILYTEDNGESICWIKTGANGSGEPYRIRCKTLLEVRDKSGAGSSAESPATVAGSGGELHEVEGAFGSEWGEQKEDAGGVGGTSSGYGTAAAA----AGVRINLKWLPQPTWSRRTVKLVDVQTACPGMFTRGMQQLLSFNTDLQSY 180
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BLAST of mRNA_Ecto-sp13_S_contig1269.2226.1 vs. uniprot
Match: A0A6H5KTP6_9PHAE (Ig-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTP6_9PHAE)

HSP 1 Score: 254 bits (649), Expect = 1.270e-81
Identity = 149/171 (87.13%), Postives = 153/171 (89.47%), Query Frame = 1 
Query:   31 QLSRGVEATLVFPGLGGISKKRRPVILYTEDNGESICWIKTGANGSGEPYRIRCKTLLEVKDKSGAGSKAESPATVARCGGESHEVEGAFGSEFDEQEXXXXXXXXXXXXXXXXXXXXXXXAGVRINLKWLPQPTWSKRTVKLVDVQTACPGVFTRGMQQLLSFNSDLQSY 543
            +LSRGVEATLVFPGLGGISKKRRPVILYTEDNGESICWIKTGANGSGEPYRIR KTLLEVKDKSGAGS+AES   VARCGG +H VEGAF SE  EQE     XXXXXXXXXXXXXXX    GVRINLKWLPQPTWSKRTVKLVDVQTACPG+FTRGMQQLLSFNSDLQSY
Sbjct:  181 ELSRGVEATLVFPGLGGISKKRRPVILYTEDNGESICWIKTGANGSGEPYRIRSKTLLEVKDKSGAGSRAES---VARCGGGAHGVEGAFRSECGEQEEDARGXXXXXXXXXXXXXXXA--TGVRINLKWLPQPTWSKRTVKLVDVQTACPGIFTRGMQQLLSFNSDLQSY 346
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1269.2226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LE00_ECTSI4.650e-9579.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTP6_9PHAE1.270e-8187.13Ig-like domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1269contigEcto-sp13_S_contig1269:9164..10637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size546
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-23_003140.1
Cds size528
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462677.7648935-UTR-Ecto-sp13_S_contig1269:9163..91811681462677.7648935-UTR-Ecto-sp13_S_contig1269:9163..9181Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1269 9164..9181 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462677.775272-CDS-Ecto-sp13_S_contig1269:9181..91961681462677.775272-CDS-Ecto-sp13_S_contig1269:9181..9196Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1269 9182..9196 +
1681462677.788158-CDS-Ecto-sp13_S_contig1269:10124..106371681462677.788158-CDS-Ecto-sp13_S_contig1269:10124..10637Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1269 10125..10637 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1269.2226.1prot_Ecto-sp13_S_contig1269.2226.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1269 9182..10637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1269.2226.1

>prot_Ecto-sp13_S_contig1269.2226.1 ID=prot_Ecto-sp13_S_contig1269.2226.1|Name=mRNA_Ecto-sp13_S_contig1269.2226.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=176bp
MRQRQLSRGVEATLVFPGLGGISKKRRPVILYTEDNGESICWIKTGANGS
GEPYRIRCKTLLEVKDKSGAGSKAESPATVARCGGESHEVEGAFGSEFDE
QEEDAGGGGGTSSGYGTAAAAAAAAAGVRINLKWLPQPTWSKRTVKLVDV
QTACPGVFTRGMQQLLSFNSDLQSY*
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mRNA from alignment at Ecto-sp13_S_contig1269:9164..10637+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1269.2226.1 ID=mRNA_Ecto-sp13_S_contig1269.2226.1|Name=mRNA_Ecto-sp13_S_contig1269.2226.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1474bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1269:9164..10637+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCATCCACTTTCCCGGATGCGGCAGAGACAGGTAGGTGGGGTGTAGCA
GCAGCGGCTGTGGAGTGGAGTGCGGTGGTTGGAGCAACGGGTTTGAGGTT
TGAGGGATTTTGAGAGACGTGGACGCCGAACATAGGCTGATCGACTGAAT
AGCCTGAGAAATACGCCGTGGACTCTGCATGGACTCCACGATGCATATTC
TTTGTCTGTTCGTGACGTACGCATACGATCCATGACCCGAACTGCACCAA
GATTCGATTAGATTCGATTTGTTTTTGCTTCAAACTCAAACTGCCAAATG
CCGCTCCTTGGAGCCACAACTGCGCCCTTGCCCACTGGAACGTGCGCAGC
CTATACAGCTCGGTCGCTTGCCCCGAGCTTCAGTAGCAGCAGCAGCAGCA
GCAGGAGATATGTCGACTCACAGCAGCAACATGATCGACATGAGCGACGT
TGCCTCTGCCTTAGAGCAGGTAAAGAAAGGTCGTGCTGACTCCGCAAACT
CTCTCTTCTCGTGGGGGAGCCAAGGCACCTCGGGTCCGACGCCGCCGTAC
GCATCTCCCCATCGGCGTCCCTCAACCTCCTCATCCTCCTCCTCGAGCAG
CAGCAGTGGCAGCAGCAGCGCGAGTGGCTCCGGCGCCACTTCCCCGTGCA
GCAGCGCAGGGTGCGGAAACAGCTTCACCAGTGGGCTGAGCGCGAGCGGC
AGGAGAGGGACTGTGAGATGGAGCGACGAGTGCGGTGGCGAGCTGGTAAC
GCAGGTTCGGACGACGACTGACTTTTGGGAGATGATGGTGTTCGGCGATG
GCGGGTGCTGCATCTGTCCGTCCAGCAGCAGCAGCGAGACGGTGTGTGAC
GGATGCGGCGAGCTCCGGCGGCGGCCAGGCGGCGACGCCTCCTCCTCCTC
CTCCCCCTCCTCCTCCTCCTCCTCCTCCCCGCCGGGCGAGCTCTTCCGGT
TCATCGCGGAGCTGTCGCGGGGGGTGGAGGCAACCCTGGTATTTCCTGGC
TTGGGCGGAATCAGCAAGAAGAGGAGGCCGGTGATCCTCTACACCGAGGA
CAACGGAGAGTCCATCTGCTGGATCAAGACCGGTGCCAACGGGTCCGGCG
AGCCCTACCGCATCCGCTGCAAGACCCTGCTAGAGGTCAAGGACAAGTCG
GGCGCGGGTTCGAAGGCTGAGAGTCCGGCAACAGTGGCGAGGTGCGGCGG
AGAATCGCATGAGGTCGAAGGGGCTTTCGGTTCGGAGTTTGACGAGCAAG
AGGAGGACGCGGGCGGGGGAGGGGGAACCAGCAGCGGCTACGGTACAGCT
GCTGCTGCTGCTGCTGCTGCTGCTGGCGTGCGGATTAACCTCAAGTGGCT
ACCGCAGCCGACGTGGTCGAAGCGGACGGTGAAGCTCGTGGATGTCCAGA
CGGCGTGCCCGGGCGTGTTTACGAGAGGGATGCAGCAGCTTTTGTCCTTC
AACTCCGACCTTCAGAGCTATTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1269:9164..10637+

>mRNA_Ecto-sp13_S_contig1269.2226.1 ID=mRNA_Ecto-sp13_S_contig1269.2226.1|Name=mRNA_Ecto-sp13_S_contig1269.2226.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=528bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1269:9164..10637+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGCAGAGACAGCTGTCGCGGGGGGTGGAGGCAACCCTGGTATTTCC
TGGCTTGGGCGGAATCAGCAAGAAGAGGAGGCCGGTGATCCTCTACACCG
AGGACAACGGAGAGTCCATCTGCTGGATCAAGACCGGTGCCAACGGGTCC
GGCGAGCCCTACCGCATCCGCTGCAAGACCCTGCTAGAGGTCAAGGACAA
GTCGGGCGCGGGTTCGAAGGCTGAGAGTCCGGCAACAGTGGCGAGGTGCG
GCGGAGAATCGCATGAGGTCGAAGGGGCTTTCGGTTCGGAGTTTGACGAG
CAAGAGGAGGACGCGGGCGGGGGAGGGGGAACCAGCAGCGGCTACGGTAC
AGCTGCTGCTGCTGCTGCTGCTGCTGCTGGCGTGCGGATTAACCTCAAGT
GGCTACCGCAGCCGACGTGGTCGAAGCGGACGGTGAAGCTCGTGGATGTC
CAGACGGCGTGCCCGGGCGTGTTTACGAGAGGGATGCAGCAGCTTTTGTC
CTTCAACTCCGACCTTCAGAGCTATTAG
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