prot_Ecto-sp13_S_contig12689.2225.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12689.2225.1
Unique Nameprot_Ecto-sp13_S_contig12689.2225.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length107
Homology
BLAST of mRNA_Ecto-sp13_S_contig12689.2225.1 vs. uniprot
Match: D8LHP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP2_ECTSI)

HSP 1 Score: 223 bits (569), Expect = 1.390e-65
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0
Query:    1 SLQVARKVYWFEKFNWFISSENYLVISGRNAQQNEVVVKKYLRPGDIYVHADLHGASSCVVRNKDPSGKRAVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 107
            SLQVARKVYWFEKFNWFISSENYLVISGRNAQQNEVVVKKYLRPGDIYVHADLHGASSCVVRNKDPSGKRAVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV
Sbjct:  658 SLQVARKVYWFEKFNWFISSENYLVISGRNAQQNEVVVKKYLRPGDIYVHADLHGASSCVVRNKDPSGKRAVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 764          
BLAST of mRNA_Ecto-sp13_S_contig12689.2225.1 vs. uniprot
Match: A0A835ZCK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCK8_9STRA)

HSP 1 Score: 181 bits (460), Expect = 6.780e-51
Identity = 86/116 (74.14%), Postives = 98/116 (84.48%), Query Frame = 0
Query:    1 SLQVARKVYWFEKFNWFISSENYL-----------VISGRNAQQNEVVVKKYLRPGDIYVHADLHGASSCVVRNKDPSGKRAVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYAD 105
            SL VARK YWFEKF+WF+SSENYL           V+SG++AQQNE +VK+YLRPGDIYVHADLHGAS+CVVRNKDP+GKR VS +A++EAGCMTVCRS AW AKMVTSAWWVYAD
Sbjct:  644 SLPVARKPYWFEKFSWFVSSENYLXXXXXXXXXXLVLSGKDAQQNEQLVKRYLRPGDIYVHADLHGASTCVVRNKDPAGKRPVSAMAIQEAGCMTVCRSAAWAAKMVTSAWWVYAD 759          
BLAST of mRNA_Ecto-sp13_S_contig12689.2225.1 vs. uniprot
Match: A0A6U1AHC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1AHC6_9STRA)

HSP 1 Score: 168 bits (426), Expect = 2.580e-46
Identity = 73/106 (68.87%), Postives = 91/106 (85.85%), Query Frame = 0
Query:    2 LQVARKVYWFEKFNWFISSENYLVISGRNAQQNEVVVKKYLRPGDIYVHADLHGASSCVVRNKDPSGKRAVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 107
            L+  RK YWFEKF+WFI+SEN+LV++GR+AQQNE +VK+YLRPGD YVHAD+HGASSC++RNKDP G   +SP+AL EAGCMTVCRS AW +K+  +AWWV+A QV
Sbjct:  522 LKAVRKPYWFEKFHWFITSENFLVLAGRDAQQNEQLVKRYLRPGDAYVHADMHGASSCILRNKDPKGLAPLSPVALHEAGCMTVCRSAAWSSKIFANAWWVHASQV 627          
BLAST of mRNA_Ecto-sp13_S_contig12689.2225.1 vs. uniprot
Match: A0A6I9YZ31_9SAUR (nuclear export mediator factor NEMF-like n=1 Tax=Thamnophis sirtalis TaxID=35019 RepID=A0A6I9YZ31_9SAUR)

HSP 1 Score: 155 bits (391), Expect = 1.390e-44
Identity = 72/106 (67.92%), Postives = 88/106 (83.02%), Query Frame = 0
Query:    2 LQVARKVYWFEKFNWFISSENYLVISGRNAQQNEVVVKKYLRPGDIYVHADLHGASSCVVRNKDPSGKRAVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 107
            +Q ARKVYWFEKF WF+SSENYLVI+GR+ QQNE++VK+YL PGDIYVHADLHGA+SCV++N  PSG R + P  L EAG M +C S AW A+++TSAWWVY +QV
Sbjct:  184 IQKARKVYWFEKFLWFVSSENYLVIAGRDQQQNEMIVKRYLNPGDIYVHADLHGATSCVIKN--PSGDR-IPPRTLTEAGTMALCYSAAWDARVITSAWWVYHNQV 286          
BLAST of mRNA_Ecto-sp13_S_contig12689.2225.1 vs. uniprot
Match: A0A0S7LM57_9TELE (NEMF (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7LM57_9TELE)

HSP 1 Score: 151 bits (381), Expect = 5.420e-44
Identity = 73/107 (68.22%), Postives = 87/107 (81.31%), Query Frame = 0
Query:    1 SLQVARKVYWFEKFNWFISSENYLVISGRNAQQNEVVVKKYLRPGDIYVHADLHGASSCVVRNKDPSGKRAVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 107
            ++Q ARKVYWFEKF WFISSENYLVI+GR+ QQNE++VK+YLR GD+YVHADLHGA+SCV++N  PSG  AV P  L EA  M VC S AW AK++TSAWWV+  QV
Sbjct:   14 TIQKARKVYWFEKFLWFISSENYLVIAGRDQQQNEMIVKRYLRSGDVYVHADLHGATSCVIKN--PSGD-AVPPRTLTEAATMAVCYSAAWDAKIITSAWWVHHHQV 117          
BLAST of mRNA_Ecto-sp13_S_contig12689.2225.1 vs. uniprot
Match: A0A0S7LLZ5_9TELE (NEMF (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7LLZ5_9TELE)

HSP 1 Score: 151 bits (381), Expect = 4.080e-43
Identity = 73/107 (68.22%), Postives = 87/107 (81.31%), Query Frame = 0
Query:    1 SLQVARKVYWFEKFNWFISSENYLVISGRNAQQNEVVVKKYLRPGDIYVHADLHGASSCVVRNKDPSGKRAVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 107
            ++Q ARKVYWFEKF WFISSENYLVI+GR+ QQNE++VK+YLR GD+YVHADLHGA+SCV++N  PSG  AV P  L EA  M VC S AW AK++TSAWWV+  QV
Sbjct:   14 TIQKARKVYWFEKFLWFISSENYLVIAGRDQQQNEMIVKRYLRSGDVYVHADLHGATSCVIKN--PSGD-AVPPRTLTEAATMAVCYSAAWDAKIITSAWWVHHHQV 117          
BLAST of mRNA_Ecto-sp13_S_contig12689.2225.1 vs. uniprot
Match: UPI001CFBF3E7 (nuclear export mediator factor NEMF n=2 Tax=Anacardiaceae TaxID=4011 RepID=UPI001CFBF3E7)

HSP 1 Score: 157 bits (398), Expect = 1.530e-42
Identity = 74/102 (72.55%), Postives = 86/102 (84.31%), Query Frame = 0
Query:    6 RKVYWFEKFNWFISSENYLVISGRNAQQNEVVVKKYLRPGDIYVHADLHGASSCVVRNKDPSGKRAVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 107
            RKV+WFEKFNWFISSENYLVISGR+AQQNE++VK+Y+  GDIYVHADLHGASS V++N  P  ++ VSPL L +AGC TVC S AW +KMVTSAWWVY  QV
Sbjct:  548 RKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDIYVHADLHGASSTVIKNHRP--EQPVSPLTLNQAGCFTVCHSQAWDSKMVTSAWWVYPHQV 647          
BLAST of mRNA_Ecto-sp13_S_contig12689.2225.1 vs. uniprot
Match: A0A0S7LM11_9TELE (NEMF (Fragment) n=5 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7LM11_9TELE)

HSP 1 Score: 151 bits (381), Expect = 2.290e-42
Identity = 73/107 (68.22%), Postives = 87/107 (81.31%), Query Frame = 0
Query:    1 SLQVARKVYWFEKFNWFISSENYLVISGRNAQQNEVVVKKYLRPGDIYVHADLHGASSCVVRNKDPSGKRAVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 107
            ++Q ARKVYWFEKF WFISSENYLVI+GR+ QQNE++VK+YLR GD+YVHADLHGA+SCV++N  PSG  AV P  L EA  M VC S AW AK++TSAWWV+  QV
Sbjct:   14 TIQKARKVYWFEKFLWFISSENYLVIAGRDQQQNEMIVKRYLRSGDVYVHADLHGATSCVIKN--PSGD-AVPPRTLTEAATMAVCYSAAWDAKIITSAWWVHHHQV 117          
BLAST of mRNA_Ecto-sp13_S_contig12689.2225.1 vs. uniprot
Match: A0A8C6XES7_NAJNA (Nuclear export mediator factor n=4 Tax=Naja naja TaxID=35670 RepID=A0A8C6XES7_NAJNA)

HSP 1 Score: 157 bits (396), Expect = 2.550e-42
Identity = 75/105 (71.43%), Postives = 88/105 (83.81%), Query Frame = 0
Query:    3 QVARKVYWFEKFNWFISSENYLVISGRNAQQNEVVVKKYLRPGDIYVHADLHGASSCVVRNKDPSGKRAVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 107
            Q ARKVYWFEKF WFISSENYLVI+GR+ QQNE++VK+YLRPGDIYVHADLHGA+SCVV+N  PSG R + P  L EAG M +C S AW A+++TSAWWVY +QV
Sbjct:  475 QKARKVYWFEKFLWFISSENYLVIAGRDQQQNEMIVKRYLRPGDIYVHADLHGATSCVVKN--PSGDR-IPPRTLTEAGTMALCYSAAWDARVITSAWWVYHNQV 576          
BLAST of mRNA_Ecto-sp13_S_contig12689.2225.1 vs. uniprot
Match: D8RA06_SELML (CCHC-type domain-containing protein (Fragment) n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RA06_SELML)

HSP 1 Score: 156 bits (395), Expect = 3.870e-42
Identity = 70/102 (68.63%), Postives = 88/102 (86.27%), Query Frame = 0
Query:    6 RKVYWFEKFNWFISSENYLVISGRNAQQNEVVVKKYLRPGDIYVHADLHGASSCVVRNKDPSGKRAVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 107
            RKV+WFEKFNWFISSENYL+ISGR+AQQNE +VK+Y++ GD+YVHADLHGASS +++N +PS  + VSPL + +AGC TVCRS AW +K++TSAWWVY  QV
Sbjct:  533 RKVHWFEKFNWFISSENYLIISGRDAQQNEQIVKRYMKKGDLYVHADLHGASSTLIKNHNPS--QPVSPLTINQAGCFTVCRSQAWDSKIITSAWWVYDHQV 632          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12689.2225.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHP2_ECTSI1.390e-65100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZCK8_9STRA6.780e-5174.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U1AHC6_9STRA2.580e-4668.87Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6I9YZ31_9SAUR1.390e-4467.92nuclear export mediator factor NEMF-like n=1 Tax=T... [more]
A0A0S7LM57_9TELE5.420e-4468.22NEMF (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
A0A0S7LLZ5_9TELE4.080e-4368.22NEMF (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
UPI001CFBF3E71.530e-4272.55nuclear export mediator factor NEMF n=2 Tax=Anacar... [more]
A0A0S7LM11_9TELE2.290e-4268.22NEMF (Fragment) n=5 Tax=Poeciliopsis prolifica Tax... [more]
A0A8C6XES7_NAJNA2.550e-4271.43Nuclear export mediator factor n=4 Tax=Naja naja T... [more]
D8RA06_SELML3.870e-4268.63CCHC-type domain-containing protein (Fragment) n=4... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008532NFACT, RNA-binding domainPFAMPF05670NFACT-R_1coord: 13..107
e-value: 5.2E-27
score: 94.6
NoneNo IPR availablePANTHERPTHR15239UNCHARACTERIZEDcoord: 3..107
NoneNo IPR availablePANTHERPTHR15239:SF6NUCLEAR EXPORT MEDIATOR FACTOR NEMFcoord: 3..107

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12689contigEcto-sp13_S_contig12689:896..2042 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12689.2225.1mRNA_Ecto-sp13_S_contig12689.2225.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12689 896..2042 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12689.2225.1 ID=prot_Ecto-sp13_S_contig12689.2225.1|Name=mRNA_Ecto-sp13_S_contig12689.2225.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
SLQVARKVYWFEKFNWFISSENYLVISGRNAQQNEVVVKKYLRPGDIYVH
ADLHGASSCVVRNKDPSGKRAVSPLALEEAGCMTVCRSGAWGAKMVTSAW
WVYADQV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008532NFACT_RNA-bd