mRNA_Ecto-sp13_S_contig12689.2225.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig12689.2225.1
Unique Name	mRNA_Ecto-sp13_S_contig12689.2225.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

[Close]

BLAST of mRNA_Ecto-sp13_S_contig12689.2225.1 vs. uniprot
Match: D8LHP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP2_ECTSI)

HSP 1 Score: 223 bits (569), Expect = 1.390e-65
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1

Query:    1 SLQVARKVYWFEKFNWFISSENYLVISGRNAQQNEVVVKKYLRPGDIYVHADLHGASSCVVRNKDPSGKRAVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 321
            SLQVARKVYWFEKFNWFISSENYLVISGRNAQQNEVVVKKYLRPGDIYVHADLHGASSCVVRNKDPSGKRAVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV
Sbjct:  658 SLQVARKVYWFEKFNWFISSENYLVISGRNAQQNEVVVKKYLRPGDIYVHADLHGASSCVVRNKDPSGKRAVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 764

[Close]

BLAST of mRNA_Ecto-sp13_S_contig12689.2225.1 vs. uniprot
Match: A0A835ZCK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCK8_9STRA)

HSP 1 Score: 181 bits (460), Expect = 6.780e-51
Identity = 86/116 (74.14%), Postives = 98/116 (84.48%), Query Frame = 1

Query:    1 SLQVARKVYWFEKFNWFISSENYL-----------VISGRNAQQNEVVVKKYLRPGDIYVHADLHGASSCVVRNKDPSGKRAVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYAD 315
            SL VARK YWFEKF+WF+SSENYL           V+SG++AQQNE +VK+YLRPGDIYVHADLHGAS+CVVRNKDP+GKR VS +A++EAGCMTVCRS AW AKMVTSAWWVYAD
Sbjct:  644 SLPVARKPYWFEKFSWFVSSENYLXXXXXXXXXXLVLSGKDAQQNEQLVKRYLRPGDIYVHADLHGASTCVVRNKDPAGKRPVSAMAIQEAGCMTVCRSAAWAAKMVTSAWWVYAD 759

[Close]

BLAST of mRNA_Ecto-sp13_S_contig12689.2225.1 vs. uniprot
Match: A0A6U1AHC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1AHC6_9STRA)

HSP 1 Score: 168 bits (426), Expect = 2.580e-46
Identity = 73/106 (68.87%), Postives = 91/106 (85.85%), Query Frame = 1

Query:    4 LQVARKVYWFEKFNWFISSENYLVISGRNAQQNEVVVKKYLRPGDIYVHADLHGASSCVVRNKDPSGKRAVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 321
            L+  RK YWFEKF+WFI+SEN+LV++GR+AQQNE +VK+YLRPGD YVHAD+HGASSC++RNKDP G   +SP+AL EAGCMTVCRS AW +K+  +AWWV+A QV
Sbjct:  522 LKAVRKPYWFEKFHWFITSENFLVLAGRDAQQNEQLVKRYLRPGDAYVHADMHGASSCILRNKDPKGLAPLSPVALHEAGCMTVCRSAAWSSKIFANAWWVHASQV 627

[Close]

BLAST of mRNA_Ecto-sp13_S_contig12689.2225.1 vs. uniprot
Match: A0A6I9YZ31_9SAUR (nuclear export mediator factor NEMF-like n=1 Tax=Thamnophis sirtalis TaxID=35019 RepID=A0A6I9YZ31_9SAUR)

HSP 1 Score: 155 bits (391), Expect = 1.390e-44
Identity = 72/106 (67.92%), Postives = 88/106 (83.02%), Query Frame = 1

Query:    4 LQVARKVYWFEKFNWFISSENYLVISGRNAQQNEVVVKKYLRPGDIYVHADLHGASSCVVRNKDPSGKRAVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 321
            +Q ARKVYWFEKF WF+SSENYLVI+GR+ QQNE++VK+YL PGDIYVHADLHGA+SCV++N  PSG R + P  L EAG M +C S AW A+++TSAWWVY +QV
Sbjct:  184 IQKARKVYWFEKFLWFVSSENYLVIAGRDQQQNEMIVKRYLNPGDIYVHADLHGATSCVIKN--PSGDR-IPPRTLTEAGTMALCYSAAWDARVITSAWWVYHNQV 286

[Close]

BLAST of mRNA_Ecto-sp13_S_contig12689.2225.1 vs. uniprot
Match: A0A0S7LM57_9TELE (NEMF (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7LM57_9TELE)

HSP 1 Score: 151 bits (381), Expect = 5.420e-44
Identity = 73/107 (68.22%), Postives = 87/107 (81.31%), Query Frame = 1

Query:    1 SLQVARKVYWFEKFNWFISSENYLVISGRNAQQNEVVVKKYLRPGDIYVHADLHGASSCVVRNKDPSGKRAVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 321
            ++Q ARKVYWFEKF WFISSENYLVI+GR+ QQNE++VK+YLR GD+YVHADLHGA+SCV++N  PSG  AV P  L EA  M VC S AW AK++TSAWWV+  QV
Sbjct:   14 TIQKARKVYWFEKFLWFISSENYLVIAGRDQQQNEMIVKRYLRSGDVYVHADLHGATSCVIKN--PSGD-AVPPRTLTEAATMAVCYSAAWDAKIITSAWWVHHHQV 117

[Close]

BLAST of mRNA_Ecto-sp13_S_contig12689.2225.1 vs. uniprot
Match: A0A0S7LLZ5_9TELE (NEMF (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7LLZ5_9TELE)

HSP 1 Score: 151 bits (381), Expect = 4.080e-43
Identity = 73/107 (68.22%), Postives = 87/107 (81.31%), Query Frame = 1

Query:    1 SLQVARKVYWFEKFNWFISSENYLVISGRNAQQNEVVVKKYLRPGDIYVHADLHGASSCVVRNKDPSGKRAVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 321
            ++Q ARKVYWFEKF WFISSENYLVI+GR+ QQNE++VK+YLR GD+YVHADLHGA+SCV++N  PSG  AV P  L EA  M VC S AW AK++TSAWWV+  QV
Sbjct:   14 TIQKARKVYWFEKFLWFISSENYLVIAGRDQQQNEMIVKRYLRSGDVYVHADLHGATSCVIKN--PSGD-AVPPRTLTEAATMAVCYSAAWDAKIITSAWWVHHHQV 117

[Close]

BLAST of mRNA_Ecto-sp13_S_contig12689.2225.1 vs. uniprot
Match: UPI001CFBF3E7 (nuclear export mediator factor NEMF n=2 Tax=Anacardiaceae TaxID=4011 RepID=UPI001CFBF3E7)

HSP 1 Score: 157 bits (398), Expect = 1.530e-42
Identity = 74/102 (72.55%), Postives = 86/102 (84.31%), Query Frame = 1

Query:   16 RKVYWFEKFNWFISSENYLVISGRNAQQNEVVVKKYLRPGDIYVHADLHGASSCVVRNKDPSGKRAVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 321
            RKV+WFEKFNWFISSENYLVISGR+AQQNE++VK+Y+  GDIYVHADLHGASS V++N  P  ++ VSPL L +AGC TVC S AW +KMVTSAWWVY  QV
Sbjct:  548 RKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDIYVHADLHGASSTVIKNHRP--EQPVSPLTLNQAGCFTVCHSQAWDSKMVTSAWWVYPHQV 647

[Close]

BLAST of mRNA_Ecto-sp13_S_contig12689.2225.1 vs. uniprot
Match: A0A0S7LM11_9TELE (NEMF (Fragment) n=5 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7LM11_9TELE)

HSP 1 Score: 151 bits (381), Expect = 2.290e-42
Identity = 73/107 (68.22%), Postives = 87/107 (81.31%), Query Frame = 1

Query:    1 SLQVARKVYWFEKFNWFISSENYLVISGRNAQQNEVVVKKYLRPGDIYVHADLHGASSCVVRNKDPSGKRAVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 321
            ++Q ARKVYWFEKF WFISSENYLVI+GR+ QQNE++VK+YLR GD+YVHADLHGA+SCV++N  PSG  AV P  L EA  M VC S AW AK++TSAWWV+  QV
Sbjct:   14 TIQKARKVYWFEKFLWFISSENYLVIAGRDQQQNEMIVKRYLRSGDVYVHADLHGATSCVIKN--PSGD-AVPPRTLTEAATMAVCYSAAWDAKIITSAWWVHHHQV 117

[Close]

BLAST of mRNA_Ecto-sp13_S_contig12689.2225.1 vs. uniprot
Match: A0A8C6XES7_NAJNA (Nuclear export mediator factor n=4 Tax=Naja naja TaxID=35670 RepID=A0A8C6XES7_NAJNA)

HSP 1 Score: 157 bits (396), Expect = 2.550e-42
Identity = 75/105 (71.43%), Postives = 88/105 (83.81%), Query Frame = 1

Query:    7 QVARKVYWFEKFNWFISSENYLVISGRNAQQNEVVVKKYLRPGDIYVHADLHGASSCVVRNKDPSGKRAVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 321
            Q ARKVYWFEKF WFISSENYLVI+GR+ QQNE++VK+YLRPGDIYVHADLHGA+SCVV+N  PSG R + P  L EAG M +C S AW A+++TSAWWVY +QV
Sbjct:  475 QKARKVYWFEKFLWFISSENYLVIAGRDQQQNEMIVKRYLRPGDIYVHADLHGATSCVVKN--PSGDR-IPPRTLTEAGTMALCYSAAWDARVITSAWWVYHNQV 576

[Close]

BLAST of mRNA_Ecto-sp13_S_contig12689.2225.1 vs. uniprot
Match: D8RA06_SELML (CCHC-type domain-containing protein (Fragment) n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RA06_SELML)

HSP 1 Score: 156 bits (395), Expect = 3.870e-42
Identity = 70/102 (68.63%), Postives = 88/102 (86.27%), Query Frame = 1

Query:   16 RKVYWFEKFNWFISSENYLVISGRNAQQNEVVVKKYLRPGDIYVHADLHGASSCVVRNKDPSGKRAVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 321
            RKV+WFEKFNWFISSENYL+ISGR+AQQNE +VK+Y++ GD+YVHADLHGASS +++N +PS  + VSPL + +AGC TVCRS AW +K++TSAWWVY  QV
Sbjct:  533 RKVHWFEKFNWFISSENYLIISGRDAQQNEQIVKRYMKKGDLYVHADLHGASSTLIKNHNPS--QPVSPLTINQAGCFTVCRSQAWDSKIITSAWWVYDHQV 632

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig12689.2225.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig12689.2225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LHP2_ECTSI	1.390e-65	100.00	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A835ZCK8_9STRA	6.780e-51	74.14	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A6U1AHC6_9STRA	2.580e-46	68.87	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A6I9YZ31_9SAUR	1.390e-44	67.92	nuclear export mediator factor NEMF-like n=1 Tax=T...	[more]
A0A0S7LM57_9TELE	5.420e-44	68.22	NEMF (Fragment) n=1 Tax=Poeciliopsis prolifica Tax...	[more]
A0A0S7LLZ5_9TELE	4.080e-43	68.22	NEMF (Fragment) n=1 Tax=Poeciliopsis prolifica Tax...	[more]
UPI001CFBF3E7	1.530e-42	72.55	nuclear export mediator factor NEMF n=2 Tax=Anacar...	[more]
A0A0S7LM11_9TELE	2.290e-42	68.22	NEMF (Fragment) n=5 Tax=Poeciliopsis prolifica Tax...	[more]
A0A8C6XES7_NAJNA	2.550e-42	71.43	Nuclear export mediator factor n=4 Tax=Naja naja T...	[more]
D8RA06_SELML	3.870e-42	68.63	CCHC-type domain-containing protein (Fragment) n=4...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig12689	contig	Ecto-sp13_S_contig12689:896..2042 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	224.2
Seed ortholog evalue	3e-56
Seed eggNOG ortholog	2880.D8LHP2
Model size	321
KEGG ko	ko:K10589
KEGG Pathway	ko04120,map04120
Hectar predicted targeting category	other localisation
Exons	2
EggNOG free text desc.	actin binding
EggNOG OGs	COG1293@1,KOG2030@2759
EC	2.3.2.26
Cds size	321
COG Functional cat.	K
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01000,ko04121

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462677.721356-CDS-Ecto-sp13_S_contig12689:895..1087	1681462677.721356-CDS-Ecto-sp13_S_contig12689:895..1087	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig12689 896..1087 +
1681462677.731652-CDS-Ecto-sp13_S_contig12689:1913..2042	1681462677.731652-CDS-Ecto-sp13_S_contig12689:1913..2042	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig12689 1914..2042 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig12689.2225.1	prot_Ecto-sp13_S_contig12689.2225.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig12689 896..2042 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig12689:896..2042+
coding sequence from alignment at Ecto-sp13_S_contig12689:896..2042+

protein sequence of mRNA_Ecto-sp13_S_contig12689.2225.1

>prot_Ecto-sp13_S_contig12689.2225.1 ID=prot_Ecto-sp13_S_contig12689.2225.1|Name=mRNA_Ecto-sp13_S_contig12689.2225.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
SLQVARKVYWFEKFNWFISSENYLVISGRNAQQNEVVVKKYLRPGDIYVH
ADLHGASSCVVRNKDPSGKRAVSPLALEEAGCMTVCRSGAWGAKMVTSAW
WVYADQV

mRNA from alignment at Ecto-sp13_S_contig12689:896..2042+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig12689.2225.1 ID=mRNA_Ecto-sp13_S_contig12689.2225.1|Name=mRNA_Ecto-sp13_S_contig12689.2225.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12689:896..2042+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCCTCCAGGTGGCTCGCAAGGTGTACTGGTTCGAGAAGTTCAACTGGTT
CATCTCGTCCGAGAACTACCTCGTCATCAGCGGCCGGAACGCCCAGCAGA
ACGAGGTGGTGGTAAAGAAGTACCTGAGGCCCGGAGACATCTACGTGCAC
GCCGATCTCCACGGCGCCTCCTCCTGCGTCGTCCGGAACAAGGTAAGCTT
TTGTTTCATGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCCTT
CTACTGCCGAGCAATGGTTGGGGAGCAAGAAAGTCAATTGGAGTGATTCT
GTTTTGTTTTTTCCAGGGTCGGTGGCTTTGGCACTGGAACATTGGAACAA
GGATAGGTGCTCGTTCGGAGCGGGGGCTCTTTGGTGCGGAGGATGGGTGG
GTGGTTGGAGCGGAGTCTTTTGTGTGGAGGGGGATTCGCTCGGAGGGGTA
CTCGTTGGCACAGACAGAGGGGGAACTATTTAGGGTTCTGTCTAGCTTGG
CTCGAATCATTTTGAGTATTCCCAGCACCGACTCCTATCAGGCTGTTGCC
ATCGAGTAAGACTGCCCCGTCCACCTCCCTCTCCCTCTCCCAGAGAGCCC
GTGGTACCTCGTCGCACCCCGGTTTCGTATTTTTGTCTTTTTCACTTCTC
CGTCACTCGAGCGTTGATTGGTTTGGTGATCACCGACCCTTGTCCTCAGG
AGAACCGGCCCTCGTCGCCTCCCTCGCCCTACCCATGGATCGCGTGCTCA
CGAAATGTATTACGGTAGCTAACTTTTGTTGTCACCCTCCTTTTGATCGT
TTGCTCACGGTTTATGCTGGTAGCTGCTATTGTTGTCGCCCTCTCATGGG
CCGTGTGCTTATGAACTAGAACTATGCTGGTATGTAGCTGCCGTTGTCTC
CAAACTTGTGGATCGTGTTCTCAAGAGTGTCTGCTGGATTTCGCTTATCG
CTTCTCGTTCGATCCCTTCTGTGTGCATCTTCTTTCCGTCCGATTAATCC
CGATCACATGAAAATCAGGACCCTTCCGGCAAGAGGGCTGTGTCGCCGCT
GGCCCTGGAAGAGGCGGGCTGCATGACCGTTTGCAGGAGCGGGGCGTGGG
GGGCCAAGATGGTCACGTCGGCGTGGTGGGTCTACGCTGACCAGGTC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12689:896..2042+

>mRNA_Ecto-sp13_S_contig12689.2225.1 ID=mRNA_Ecto-sp13_S_contig12689.2225.1|Name=mRNA_Ecto-sp13_S_contig12689.2225.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12689:896..2042+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCCTCCAGGTGGCTCGCAAGGTGTACTGGTTCGAGAAGTTCAACTGGTT
CATCTCGTCCGAGAACTACCTCGTCATCAGCGGCCGGAACGCCCAGCAGA
ACGAGGTGGTGGTAAAGAAGTACCTGAGGCCCGGAGACATCTACGTGCAC
GCCGATCTCCACGGCGCCTCCTCCTGCGTCGTCCGGAACAAGGACCCTTC
CGGCAAGAGGGCTGTGTCGCCGCTGGCCCTGGAAGAGGCGGGCTGCATGA
CCGTTTGCAGGAGCGGGGCGTGGGGGGCCAAGATGGTCACGTCGGCGTGG
TGGGTCTACGCTGACCAGGTC