mRNA_Ecto-sp13_S_contig12688.2224.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12688.2224.1
Unique NamemRNA_Ecto-sp13_S_contig12688.2224.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12688.2224.1 vs. uniprot
Match: A0A6H5L1A9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A9_9PHAE)

HSP 1 Score: 339 bits (870), Expect = 1.910e-112
Identity = 185/235 (78.72%), Postives = 192/235 (81.70%), Query Frame = 2 
Query:  131 MASTKPGIVPPPGDGHHSGWVRAAAAAPPHGQGYGFCPAPRRGGGATSTASAPVADGGERGGYSTGRISHSFGRRAGGGRRRGTTVGCLFALGVLAWVWVMGSFGAFFSARTPSSSAAAPLREPVAINNKINTTTTDSNPASSAPRRTTSGLPAVHAPGLDTPAAANGGGDRAAVPLATRNGADANSIPAGGGRDYLHKPRSEIESDAVDVAGPYAQFPGPPAAGREEGVRNGGG 835
            MASTKPGIVPPPGDGHHSGW R AAAAPPHGQGYG+CPAPRRGGGAT  ASA V DGGER GY  GRIS  FG R GGGRR GT VGCLFALGVLAWVWVMGSF A FSA TPSSSAAAP REP+             +PAS AP RTTSGLPAVHAPGLDTPAAANGGGDRAA+ LATR GADANSIPAG G DYLHKPR EIES+A DVAGPY QFPGP A GRE+GVR+GGG
Sbjct:    1 MASTKPGIVPPPGDGHHSGWARTAAAAPPHGQGYGYCPAPRRGGGAT--ASASVVDGGEREGYYIGRISSGFGTRVGGGRRGGTAVGCLFALGVLAWVWVMGSFRALFSAGTPSSSAAAPTREPL-------------SPASPAPGRTTSGLPAVHAPGLDTPAAANGGGDRAALSLATRKGADANSIPAGDGPDYLHKPRLEIESEAADVAGPYDQFPGPQADGREKGVRDGGG 220
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BLAST of mRNA_Ecto-sp13_S_contig12688.2224.1 vs. uniprot
Match: D7FHD4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD4_ECTSI)

HSP 1 Score: 346 bits (887), Expect = 3.110e-112
Identity = 188/237 (79.32%), Postives = 196/237 (82.70%), Query Frame = 2 
Query:  125 SVMASTKPGIVPPPGDGHHSGWVRAAAAAPPHGQGYGFCPAPRRGGGATSTASAPVADGGERGGYSTGRISHSFGRRAGGGRRRGTTVGCLFALGVLAWVWVMGSFGAFFSARTPSSSAAAPLREPVAINNKINTTTTDSNPASSAPRRTTSGLPAVHAPGLDTPAAANGGGDRAAVPLATRNGADANSIPAGGGRDYLHKPRSEIESDAVDVAGPYAQFPGPPAAGREEGVRNGGG 835
            S MASTKPG VPPPGDGHHSGW R AAAAP HGQGY +CPAPRRGGGAT  ASAPVADGGERGGY TGRISH FGRRAGGGRR GT VGCLFALGVLAWVWVMGSF  FFS  TPSSSAAAP REP+              PASSAPRRTTSGLPAVHAPGLDTPAAA+GGG R AV LATRNGA+A+SIPAGGG DYLHKPR EIES A DV+GPY QFPGP A GRE+GVR+GGG
Sbjct:    2 SAMASTKPGGVPPPGDGHHSGWARTAAAAPSHGQGYRYCPAPRRGGGAT--ASAPVADGGERGGYYTGRISHGFGRRAGGGRRGGTAVGCLFALGVLAWVWVMGSFRTFFSVGTPSSSAAAPTREPL-------------GPASSAPRRTTSGLPAVHAPGLDTPAAADGGGGRDAVSLATRNGANADSIPAGGGPDYLHKPRLEIESGAADVSGPYDQFPGPQADGREKGVRDGGG 223
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12688.2224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L1A9_9PHAE1.910e-11278.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHD4_ECTSI3.110e-11279.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12688contigEcto-sp13_S_contig12688:3125..4327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size835
Hectar predicted targeting categoryother localisation
Exons2
Cds size705
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462677.662085-CDS-Ecto-sp13_S_contig12688:3124..36081681462677.662085-CDS-Ecto-sp13_S_contig12688:3124..3608Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12688 3125..3608 -
1681462677.6735923-CDS-Ecto-sp13_S_contig12688:3976..41971681462677.6735923-CDS-Ecto-sp13_S_contig12688:3976..4197Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12688 3977..4197 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462677.6901913-UTR-Ecto-sp13_S_contig12688:4197..43271681462677.6901913-UTR-Ecto-sp13_S_contig12688:4197..4327Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12688 4198..4327 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12688.2224.1prot_Ecto-sp13_S_contig12688.2224.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12688 3125..4197 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12688.2224.1

>prot_Ecto-sp13_S_contig12688.2224.1 ID=prot_Ecto-sp13_S_contig12688.2224.1|Name=mRNA_Ecto-sp13_S_contig12688.2224.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=235bp
MASTKPGIVPPPGDGHHSGWVRAAAAAPPHGQGYGFCPAPRRGGGATSTA
SAPVADGGERGGYSTGRISHSFGRRAGGGRRRGTTVGCLFALGVLAWVWV
MGSFGAFFSARTPSSSAAAPLREPVAINNKINTTTTDSNPASSAPRRTTS
GLPAVHAPGLDTPAAANGGGDRAAVPLATRNGADANSIPAGGGRDYLHKP
RSEIESDAVDVAGPYAQFPGPPAAGREEGVRNGGG
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mRNA from alignment at Ecto-sp13_S_contig12688:3125..4327-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12688.2224.1 ID=mRNA_Ecto-sp13_S_contig12688.2224.1|Name=mRNA_Ecto-sp13_S_contig12688.2224.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1203bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12688:3125..4327- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTAGCGTCCGGACAACCCACCACCGACACACTAGAGCCTGGTCTTCGG
CGCTGTCGCGAGTGTTGCGCTAGCCGTCCACCGGTGCCGGCGGCGGTGTC
GGTGCCGCCGGTGCCGCCGCAACGAGCGTCATGGCCAGTACGAAGCCTGG
CATAGTGCCTCCTCCAGGCGACGGTCATCACAGCGGATGGGTGAGGGCCG
CTGCAGCTGCTCCTCCGCACGGGCAGGGCTACGGTTTTTGTCCTGCTCCA
CGCCGGGGGGGGGGCGCTACAAGTACTGCTTCTGCCCCCGTCGCGGACGG
GGGGGAGAGGGGAGGTTACTCCACCGGCAGGATCTCTCACAGTTTCGGCA
GGTGAGTCTTGACGTGATGCTTGCGTGATGTGCCCTTTTTATAATTGTTT
TGTTTTAGGTCCAGCGGGACAGGGATTTTTTTGGCGGCATGGGCATGCGG
TGCTGCGACATTATTGAGATACTAAGAAGAGGCTCAACGTGTGACCAGTA
ATTCCGAACGAGCCGACTTGCTGTGTGTGTGTGTGTGTGACCAAACCTCG
CACACTACGCGGGAAAGAAAGCTAGAGAGAGAGGGAGAGAAAACACCGAC
CCTCTTCTGCTTCCGCGCCTTGTTGATACGCGGTGGGCGTGCTACTGGTA
CGTCATTATCGTTGGCGCTTGCGCGCTCTCGTCCCCGCTCGCTCGCTCGC
TCGTTTCGTTTTGTTTCAGGAGGGCCGGCGGGGGTCGGCGACGGGGCACA
ACAGTTGGGTGCCTGTTCGCTCTGGGGGTGCTGGCCTGGGTGTGGGTGAT
GGGGTCGTTCGGCGCATTCTTCTCGGCGAGGACCCCGTCGTCATCAGCTG
CAGCGCCGCTGCGGGAGCCCGTGGCCATCAACAACAAGATCAACACCACC
ACCACCGATAGCAACCCCGCGTCCTCGGCACCACGGAGGACAACGAGCGG
CCTGCCGGCCGTCCATGCCCCCGGCCTGGACACGCCTGCTGCTGCCAACG
GTGGTGGTGATCGAGCTGCTGTACCCCTCGCGACAAGAAACGGTGCTGAC
GCCAACAGCATCCCTGCGGGGGGCGGGCGAGACTACCTCCACAAGCCTCG
CTCAGAGATAGAATCAGACGCGGTGGATGTTGCGGGACCCTACGCCCAGT
TCCCGGGGCCGCCGGCCGCCGGCCGAGAGGAGGGGGTTCGCAACGGCGGC
GGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12688:3125..4327-

>mRNA_Ecto-sp13_S_contig12688.2224.1 ID=mRNA_Ecto-sp13_S_contig12688.2224.1|Name=mRNA_Ecto-sp13_S_contig12688.2224.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=705bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12688:3125..4327- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCAGTACGAAGCCTGGCATAGTGCCTCCTCCAGGCGACGGTCATCA
CAGCGGATGGGTGAGGGCCGCTGCAGCTGCTCCTCCGCACGGGCAGGGCT
ACGGTTTTTGTCCTGCTCCACGCCGGGGGGGGGGCGCTACAAGTACTGCT
TCTGCCCCCGTCGCGGACGGGGGGGAGAGGGGAGGTTACTCCACCGGCAG
GATCTCTCACAGTTTCGGCAGGAGGGCCGGCGGGGGTCGGCGACGGGGCA
CAACAGTTGGGTGCCTGTTCGCTCTGGGGGTGCTGGCCTGGGTGTGGGTG
ATGGGGTCGTTCGGCGCATTCTTCTCGGCGAGGACCCCGTCGTCATCAGC
TGCAGCGCCGCTGCGGGAGCCCGTGGCCATCAACAACAAGATCAACACCA
CCACCACCGATAGCAACCCCGCGTCCTCGGCACCACGGAGGACAACGAGC
GGCCTGCCGGCCGTCCATGCCCCCGGCCTGGACACGCCTGCTGCTGCCAA
CGGTGGTGGTGATCGAGCTGCTGTACCCCTCGCGACAAGAAACGGTGCTG
ACGCCAACAGCATCCCTGCGGGGGGCGGGCGAGACTACCTCCACAAGCCT
CGCTCAGAGATAGAATCAGACGCGGTGGATGTTGCGGGACCCTACGCCCA
GTTCCCGGGGCCGCCGGCCGCCGGCCGAGAGGAGGGGGTTCGCAACGGCG
GCGGC
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