prot_Ecto-sp13_S_contig12688.2224.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig12688.2224.1
Unique Name	prot_Ecto-sp13_S_contig12688.2224.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	235

Homology

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BLAST of mRNA_Ecto-sp13_S_contig12688.2224.1 vs. uniprot
Match: A0A6H5L1A9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A9_9PHAE)

HSP 1 Score: 340 bits (873), Expect = 1.280e-113
Identity = 185/235 (78.72%), Postives = 192/235 (81.70%), Query Frame = 0

Query:    1 MASTKPGIVPPPGDGHHSGWVRAAAAAPPHGQGYGFCPAPRRGGGATSTASAPVADGGERGGYSTGRISHSFGRRAGGGRRRGTTVGCLFALGVLAWVWVMGSFGAFFSARTPSSSAAAPLREPVAINNKINTTTTDSNPASSAPRRTTSGLPAVHAPGLDTPAAANGGGDRAAVPLATRNGADANSIPAGGGRDYLHKPRSEIESDAVDVAGPYAQFPGPPAAGREEGVRNGGG 235
            MASTKPGIVPPPGDGHHSGW R AAAAPPHGQGYG+CPAPRRGGGAT  ASA V DGGER GY  GRIS  FG R GGGRR GT VGCLFALGVLAWVWVMGSF A FSA TPSSSAAAP REP+             +PAS AP RTTSGLPAVHAPGLDTPAAANGGGDRAA+ LATR GADANSIPAG G DYLHKPR EIES+A DVAGPY QFPGP A GRE+GVR+GGG
Sbjct:    1 MASTKPGIVPPPGDGHHSGWARTAAAAPPHGQGYGYCPAPRRGGGAT--ASASVVDGGEREGYYIGRISSGFGTRVGGGRRGGTAVGCLFALGVLAWVWVMGSFRALFSAGTPSSSAAAPTREPL-------------SPASPAPGRTTSGLPAVHAPGLDTPAAANGGGDRAALSLATRKGADANSIPAGDGPDYLHKPRLEIESEAADVAGPYDQFPGPQADGREKGVRDGGG 220

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BLAST of mRNA_Ecto-sp13_S_contig12688.2224.1 vs. uniprot
Match: D7FHD4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD4_ECTSI)

HSP 1 Score: 345 bits (885), Expect = 1.180e-112
Identity = 187/235 (79.57%), Postives = 195/235 (82.98%), Query Frame = 0

Query:    1 MASTKPGIVPPPGDGHHSGWVRAAAAAPPHGQGYGFCPAPRRGGGATSTASAPVADGGERGGYSTGRISHSFGRRAGGGRRRGTTVGCLFALGVLAWVWVMGSFGAFFSARTPSSSAAAPLREPVAINNKINTTTTDSNPASSAPRRTTSGLPAVHAPGLDTPAAANGGGDRAAVPLATRNGADANSIPAGGGRDYLHKPRSEIESDAVDVAGPYAQFPGPPAAGREEGVRNGGG 235
            MASTKPG VPPPGDGHHSGW R AAAAP HGQGY +CPAPRRGGGAT  ASAPVADGGERGGY TGRISH FGRRAGGGRR GT VGCLFALGVLAWVWVMGSF  FFS  TPSSSAAAP REP+              PASSAPRRTTSGLPAVHAPGLDTPAAA+GGG R AV LATRNGA+A+SIPAGGG DYLHKPR EIES A DV+GPY QFPGP A GRE+GVR+GGG
Sbjct:    4 MASTKPGGVPPPGDGHHSGWARTAAAAPSHGQGYRYCPAPRRGGGAT--ASAPVADGGERGGYYTGRISHGFGRRAGGGRRGGTAVGCLFALGVLAWVWVMGSFRTFFSVGTPSSSAAAPTREPL-------------GPASSAPRRTTSGLPAVHAPGLDTPAAADGGGGRDAVSLATRNGANADSIPAGGGPDYLHKPRLEIESGAADVSGPYDQFPGPQADGREKGVRDGGG 223

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig12688.2224.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig12688.2224.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5L1A9_9PHAE	1.280e-113	78.72	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FHD4_ECTSI	1.180e-112	79.57	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 84..108
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..83
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 109..235
None	No IPR available	TMHMM	TMhelix		coord: 86..108

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig12688	contig	Ecto-sp13_S_contig12688:3125..4197 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig12688.2224.1	mRNA_Ecto-sp13_S_contig12688.2224.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig12688 3125..4327 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig12688.2224.1 ID=prot_Ecto-sp13_S_contig12688.2224.1|Name=mRNA_Ecto-sp13_S_contig12688.2224.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=235bp
MASTKPGIVPPPGDGHHSGWVRAAAAAPPHGQGYGFCPAPRRGGGATSTA
SAPVADGGERGGYSTGRISHSFGRRAGGGRRRGTTVGCLFALGVLAWVWV
MGSFGAFFSARTPSSSAAAPLREPVAINNKINTTTTDSNPASSAPRRTTS
GLPAVHAPGLDTPAAANGGGDRAAVPLATRNGADANSIPAGGGRDYLHKP
RSEIESDAVDVAGPYAQFPGPPAAGREEGVRNGGG