mRNA_Ecto-sp13_S_contig12688.2223.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12688.2223.1
Unique NamemRNA_Ecto-sp13_S_contig12688.2223.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12688.2223.1 vs. uniprot
Match: A0A6H5L1A9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A9_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 1.780e-61
Identity = 90/94 (95.74%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:    1 FLSTEELADETLADGKARCWNDDAGNGRCLPTVFFFGVSKCGTTSLSNWLSSHPRAVFVPPPEAHDYREAHVFDNTPRYWHGVSDRGKRESLSP 282
             LS+EELADETLADGKARCW D+AGNGRCLPTVFFFGVSKCGTTSLSNWLSSHPRAVFVPPPEAHDYREAHVFDNTPRYWHGVSDRGKRESLSP
Sbjct:  227 LLSSEELADETLADGKARCWTDEAGNGRCLPTVFFFGVSKCGTTSLSNWLSSHPRAVFVPPPEAHDYREAHVFDNTPRYWHGVSDRGKRESLSP 320
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BLAST of mRNA_Ecto-sp13_S_contig12688.2223.1 vs. uniprot
Match: D7FHD4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD4_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 5.080e-60
Identity = 90/94 (95.74%), Postives = 93/94 (98.94%), Query Frame = 1 
Query:    1 FLSTEELADETLADGKARCWNDDAGNGRCLPTVFFFGVSKCGTTSLSNWLSSHPRAVFVPPPEAHDYREAHVFDNTPRYWHGVSDRGKRESLSP 282
            FLS+EELADETLADGKARCW D+AGNGRCLPTVFFFGVSKCGTTSLSNWLSSHPRAVFVPPPEAHDYREAHVFDNTP+YWHGVSDRGKRESLSP
Sbjct:  229 FLSSEELADETLADGKARCWTDEAGNGRCLPTVFFFGVSKCGTTSLSNWLSSHPRAVFVPPPEAHDYREAHVFDNTPKYWHGVSDRGKRESLSP 322
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BLAST of mRNA_Ecto-sp13_S_contig12688.2223.1 vs. uniprot
Match: D8LLL8_ECTSI (Sulfotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLL8_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 1.880e-14
Identity = 37/73 (50.68%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:   34 LADGKARCWNDDAGNGRCLPTVFFFGVSKCGTTSLSNWLSSHPRAVFVPPP------EAHDYREAHVFDNTPR 234
            L DG+ RC+    G+ RC PTVFFFG SKCGTTSL+ WL  HP   +V  P      E    +EAHVFD+ P+
Sbjct:  152 LRDGRNRCFVGAEGDHRCYPTVFFFGTSKCGTTSLARWLDHHPATHWVANPRRPHQIEETGVKEAHVFDDPPK 224
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BLAST of mRNA_Ecto-sp13_S_contig12688.2223.1 vs. uniprot
Match: D7G7B1_ECTSI (Sulfotransferase, C-terminal Sulfotransferase, N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7B1_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.160e-5
Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:   49 ARCWN-DDAGNGRCLPTVFFFGVSKCGTTSLSNWLSSHPRAVFV 177
            ARC+  +   + RC   V+FFGVSKCGTTSL++W++ HP   +V
Sbjct:   69 ARCFVLEGEDSSRCHANVYFFGVSKCGTTSLAHWMARHPALSWV 112
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BLAST of mRNA_Ecto-sp13_S_contig12688.2223.1 vs. uniprot
Match: A0A6H5JZE4_9PHAE (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZE4_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 3.070e-5
Identity = 19/34 (55.88%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:   76 NGRCLPTVFFFGVSKCGTTSLSNWLSSHPRAVFV 177
            + RC   V+FFGVSKCGTTSL++W++ HP   +V
Sbjct:  119 SSRCHANVYFFGVSKCGTTSLAHWMARHPALQWV 152
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12688.2223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L1A9_9PHAE1.780e-6195.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHD4_ECTSI5.080e-6095.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLL8_ECTSI1.880e-1450.68Sulfotransferase n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
D7G7B1_ECTSI1.160e-550.00Sulfotransferase, C-terminal Sulfotransferase, N-t... [more]
A0A6H5JZE4_9PHAE3.070e-555.88Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12688contigEcto-sp13_S_contig12688:2008..3103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score78.6
Seed ortholog evalue1.8e-12
Seed eggNOG ortholog2880.D8LLL8
Model size286
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.heparan sulfate sulfotransferase activity
EggNOG OGsKOG3704@1,KOG3704@2759
Cds size282
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462677.6010647-CDS-Ecto-sp13_S_contig12688:2009..21671681462677.6010647-CDS-Ecto-sp13_S_contig12688:2009..2167Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12688 2010..2167 -
1681462677.6172347-CDS-Ecto-sp13_S_contig12688:2979..31031681462677.6172347-CDS-Ecto-sp13_S_contig12688:2979..3103Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12688 2980..3103 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12688.2223.1prot_Ecto-sp13_S_contig12688.2223.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12688 2010..3103 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12688.2223.1

>prot_Ecto-sp13_S_contig12688.2223.1 ID=prot_Ecto-sp13_S_contig12688.2223.1|Name=mRNA_Ecto-sp13_S_contig12688.2223.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=94bp
FLSTEELADETLADGKARCWNDDAGNGRCLPTVFFFGVSKCGTTSLSNWL
SSHPRAVFVPPPEAHDYREAHVFDNTPRYWHGVSDRGKRESLSP
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mRNA from alignment at Ecto-sp13_S_contig12688:2008..3103-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12688.2223.1 ID=mRNA_Ecto-sp13_S_contig12688.2223.1|Name=mRNA_Ecto-sp13_S_contig12688.2223.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1096bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12688:2008..3103- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCTTGTCGACGGAGGAGCTGGCCGACGAGACCCTGGCGGACGGGAAGGC
GAGGTGTTGGAACGACGATGCCGGGAACGGCCGGTGCCTTCCCACCGTGT
TCTTCTTCGGGGTGTCCAAATGCGGTGAGTTTTTTGGGGTAGCAACGGGG
AAGAAGAGGAAACGGCCAAAATATCTACGTCTTCGTGGGGCTTCCACTGT
CAAAATATATCACCACCTCGAATCCACACCCTTCGAGAGTGTTCATGTTC
CCATGGGCTGCGGTGAAGCTATCGCCCTTGCACTTCCCACTCTCTATGGT
GCGCGTTTCGGATTATCACTTGCTTGTACCACGTAGTACCATCTCCGTGC
TGTTGTCAGTCAGTGACCCGTGTTTTTCAGGGTGTTGATGGAGACCTTCA
AGTGTACAGTTGGCCTTGTACTGGGTAGAGGGTGGAACACGTTTTTTTTT
TTGCCTACTATCCCTATCGTTTCTTCTTTGGGCGTGTGGTGACGGGTGCC
GGAGTAAGTCTTGGGGAAGAAAGTTGGTGTTGGGGTGTGGACCAGCGTCA
CCGGCGCGAGGCCGCTTCCAATCTCGCGGTGCGTCAACGGCAACATTTAC
ATCATTGATTTCGGATATGCATTTACTCTAGGATTTACTACGTTCTTTGT
AGCTGAGGCCCAATGGATGCGATGCGTGGACCGCTCCGTCTGTTTATGCC
TCAACCTCATGTATTATTTATTCATGGTGCGTTTTTGTGCCTCGTCCTCG
TCTATTTTTTGTCTTTGAGGGTCAATACAGTGGCGTTAAGGCCCGCGACA
CTGATTCTTAGCTGCTGCTGTCCTACGTAATCATCCTCGGGGGAGATGTC
GGAAGCCACTCACACGTTGGGTGAGTTATGATGGGGAAGAAATGAGCGTT
CCCACCACCCGTTTGTGGTCCATCGCGTCGCAACAGGCACAACGTCCCTG
TCAAACTGGCTGTCCTCGCACCCTCGAGCGGTCTTCGTCCCTCCTCCTGA
GGCGCACGACTATCGGGAGGCCCACGTCTTCGACAACACGCCCAGGTACT
GGCACGGCGTGAGCGATCGGGGCAAGCGGGAGAGCCTTTCTCCCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12688:2008..3103-

>mRNA_Ecto-sp13_S_contig12688.2223.1 ID=mRNA_Ecto-sp13_S_contig12688.2223.1|Name=mRNA_Ecto-sp13_S_contig12688.2223.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=282bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12688:2008..3103- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCTTGTCGACGGAGGAGCTGGCCGACGAGACCCTGGCGGACGGGAAGGC
GAGGTGTTGGAACGACGATGCCGGGAACGGCCGGTGCCTTCCCACCGTGT
TCTTCTTCGGGGTGTCCAAATGCGGCACAACGTCCCTGTCAAACTGGCTG
TCCTCGCACCCTCGAGCGGTCTTCGTCCCTCCTCCTGAGGCGCACGACTA
TCGGGAGGCCCACGTCTTCGACAACACGCCCAGGTACTGGCACGGCGTGA
GCGATCGGGGCAAGCGGGAGAGCCTTTCTCCC
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