mRNA_Ecto-sp13_S_contig12687.2222.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12687.2222.1 vs. uniprot
Match: A0A6H5K3X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3X4_9PHAE) HSP 1 Score: 124 bits (311), Expect = 4.290e-34 Identity = 64/66 (96.97%), Postives = 66/66 (100.00%), Query Frame = 3
Query: 3 GNAAVVQSIVDKLPDIAREIAAPLAKTDKMVFIAGEGGGAGSRLTQDVGNILAQLPETVEALTGGN 200
GNAAVVQSIVDKLPDIAREIAAPLAKTDKMVFIAG+GGGAGSRLTQDVGNILAQLPETV+ALTGGN
Sbjct: 110 GNAAVVQSIVDKLPDIAREIAAPLAKTDKMVFIAGDGGGAGSRLTQDVGNILAQLPETVQALTGGN 175
BLAST of mRNA_Ecto-sp13_S_contig12687.2222.1 vs. uniprot
Match: D7G1I5_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I5_ECTSI) HSP 1 Score: 122 bits (306), Expect = 4.500e-31 Identity = 64/74 (86.49%), Postives = 69/74 (93.24%), Query Frame = 3
Query: 3 GNAAVVQSIVDKLPDIAREIAAPLAKTDKMVFIAGEGGGAGSRLTQDVGNILAQLPETVEALTGGNLFSAVKDF 224
GNAAVVQSIVDKLPDIAREIAAPLAKTDKMVFIAGEGGGAGSRLTQDVGNILAQLPETVEALTG ++ ++ +
Sbjct: 337 GNAAVVQSIVDKLPDIAREIAAPLAKTDKMVFIAGEGGGAGSRLTQDVGNILAQLPETVEALTGVDITKGLERY 410
BLAST of mRNA_Ecto-sp13_S_contig12687.2222.1 vs. uniprot
Match: D7G1I4_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I4_ECTSI) HSP 1 Score: 118 bits (296), Expect = 1.710e-29 Identity = 61/64 (95.31%), Postives = 64/64 (100.00%), Query Frame = 3
Query: 3 GNAAVVQSIVDKLPDIAREIAAPLAKTDKMVFIAGEGGGAGSRLTQDVGNILAQLPETVEALTG 194
GNAA+VQSIVD+LPDIAREIAAPLAKTDKMVFIAGEGGGAGSRLTQDVG+ILAQLPETVEALTG
Sbjct: 359 GNAAIVQSIVDRLPDIAREIAAPLAKTDKMVFIAGEGGGAGSRLTQDVGSILAQLPETVEALTG 422
BLAST of mRNA_Ecto-sp13_S_contig12687.2222.1 vs. uniprot
Match: UPI0009DD10DA (SPFH domain-containing protein n=1 Tax=Clostridium culturomicium TaxID=1499683 RepID=UPI0009DD10DA) HSP 1 Score: 87.8 bits (216), Expect = 2.830e-18 Identity = 45/93 (48.39%), Postives = 65/93 (69.89%), Query Frame = 3
Query: 3 GNAAVVQSIVDKLPDIAREIAAPLAKTDKMVFIAGEGGGAGSRLTQDVGNILAQLPETVEALTGGNLFSAVKDFGRLCQAWSRPAKDASIAIS 281
G+AA+VQ VDKLP+IA+ ++ PL+KTDKMV I G G S+LT++V NI++QLPE V++LTG NL +K+F ++ S A D+ +S
Sbjct: 380 GDAAIVQMFVDKLPEIAKNVSEPLSKTDKMVIIDNGGEGGASKLTKNVTNIMSQLPEVVDSLTGINLVDLIKNFTNKSESNSETASDSEGQVS 472
BLAST of mRNA_Ecto-sp13_S_contig12687.2222.1 vs. uniprot
Match: A0A7C7QQR8_9CHLR (Flotillin family protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C7QQR8_9CHLR) HSP 1 Score: 76.3 bits (186), Expect = 5.440e-16 Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 3
Query: 6 NAAVVQSIVDKLPDIAREIAAPLAKTDKMVFI--AGEGGGAGSRLTQDVGNILAQLPETVEALTGGNLFSAVKD 221
AA++Q ++D LP +A IA PLAKT+++V I G+ G SR+TQDV NI+AQ+P TVEALTG +L + D
Sbjct: 18 QAAIIQQLIDSLPKVAAAIAEPLAKTERIVIINAGGDSGAGASRITQDVANIIAQVPATVEALTGVDLVETISD 91
BLAST of mRNA_Ecto-sp13_S_contig12687.2222.1 vs. uniprot
Match: A0A535IAW1_9CHLR (Flotillin family protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535IAW1_9CHLR) HSP 1 Score: 76.3 bits (186), Expect = 5.730e-16 Identity = 40/76 (52.63%), Postives = 58/76 (76.32%), Query Frame = 3
Query: 6 NAAVVQSIVDKLPDIAREIAAPLAKTDKMVFIA---GEGGGAG-SRLTQDVGNILAQLPETVEALTGGNLFSAVKD 221
AA++Q +VDK+P IA I+ PLA+TD++V I+ G G GAG SRLTQD+ NI++Q+P TVEALTG ++ +++D
Sbjct: 23 EAAIIQQLVDKMPQIAEAISKPLAQTDRIVIISNGDGNGHGAGASRLTQDITNIISQVPATVEALTGVDVVGSIRD 98
BLAST of mRNA_Ecto-sp13_S_contig12687.2222.1 vs. uniprot
Match: A0A3M2AF75_9CHLR (Flotillin family protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M2AF75_9CHLR) HSP 1 Score: 79.3 bits (194), Expect = 2.420e-15 Identity = 42/87 (48.28%), Postives = 62/87 (71.26%), Query Frame = 3
Query: 6 NAAVVQSIVDKLPDIAREIAAPLAKTDKMVFIAGEGGGAG-SRLTQDVGNILAQLPETVEALTGGNLFSAVKDFGRLCQAWSRPAKD 263
AAV+Q ++DKLP+IA I+ PL+KT+++V ++ G GAG SR+TQD+ NI+AQ+P TVEALTG +L A+ L + + AK+
Sbjct: 322 QAAVIQQLLDKLPEIAAAISQPLSKTERIVVVSNGGDGAGASRITQDITNIMAQVPATVEALTGMDLMGAISSLPGLKETGADGAKE 408
BLAST of mRNA_Ecto-sp13_S_contig12687.2222.1 vs. uniprot
Match: UPI001EFF56A4 (SPFH domain-containing protein n=1 Tax=Turicibacter sp. TJ11 TaxID=2806443 RepID=UPI001EFF56A4) HSP 1 Score: 79.3 bits (194), Expect = 2.710e-15 Identity = 39/74 (52.70%), Postives = 55/74 (74.32%), Query Frame = 3
Query: 3 GNAAVVQSIVDKLPDIAREIAAPLAKTDKMVFIAGEGGGAGSRLTQDVGNILAQLPETVEALTGGNLFSAVKDF 224
G AAVVQ IV+KLP++A+ IA PLA+TDK+V I GG +R+TQ+V I++++PE VE+LTG NL + + F
Sbjct: 380 GEAAVVQMIVEKLPELAKNIAEPLAQTDKIVIIDNGGGNGAARVTQNVTKIMSEIPEVVESLTGINLINLISSF 453
BLAST of mRNA_Ecto-sp13_S_contig12687.2222.1 vs. uniprot
Match: W6RTV8_9CLOT (PHB domain-containing protein n=2 Tax=Clostridium bornimense TaxID=1216932 RepID=W6RTV8_9CLOT) HSP 1 Score: 79.3 bits (194), Expect = 2.740e-15 Identity = 36/76 (47.37%), Postives = 56/76 (73.68%), Query Frame = 3
Query: 3 GNAAVVQSIVDKLPDIAREIAAPLAKTDKMVFIAGEGGGAGSRLTQDVGNILAQLPETVEALTGGNLFSAVKDFGR 230
G+AA++Q + DKLP+IAR IA PL++TDKMV I G G S++T++V N++A+LP+ + +LTG N+ +KD +
Sbjct: 379 GDAAIIQMLADKLPEIARYIAEPLSRTDKMVVIDNGGQGGASKITKNVTNVMAELPDVINSLTGINIVDLIKDMSK 454
BLAST of mRNA_Ecto-sp13_S_contig12687.2222.1 vs. uniprot
Match: A0A7R9SVU7_9CHLO (Flotillin-like n=1 Tax=Polyblepharides amylifera TaxID=1486889 RepID=A0A7R9SVU7_9CHLO) HSP 1 Score: 75.9 bits (185), Expect = 4.460e-14 Identity = 38/72 (52.78%), Postives = 57/72 (79.17%), Query Frame = 3
Query: 3 GNAAVVQSIVDKLPDIAREIAAPLAKTDKMVFIAGEGGGAGSRLTQDVGNILAQLPETVEALTGGNLFSAVK 218
G AA++QS+V++LP IA +A PL KT+KM+FI+ + G AGS+LT+D+ I+A+LP+TVEAL+G ++ A K
Sbjct: 359 GTAALIQSVVEQLPAIASAVAEPLGKTEKMIFIS-QDGSAGSQLTKDITRIMAELPDTVEALSGVDIKKAFK 429 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12687.2222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12687.2222.1 >prot_Ecto-sp13_S_contig12687.2222.1 ID=prot_Ecto-sp13_S_contig12687.2222.1|Name=mRNA_Ecto-sp13_S_contig12687.2222.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp LETQRWCRASSTSCPISPGRSPLLSPRPTRWSSSLARAGVQAAALRKTLAback to top mRNA from alignment at Ecto-sp13_S_contig12687:4193..4968- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12687.2222.1 ID=mRNA_Ecto-sp13_S_contig12687.2222.1|Name=mRNA_Ecto-sp13_S_contig12687.2222.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=776bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12687:4193..4968- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12687:4193..4968- >mRNA_Ecto-sp13_S_contig12687.2222.1 ID=mRNA_Ecto-sp13_S_contig12687.2222.1|Name=mRNA_Ecto-sp13_S_contig12687.2222.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12687:4193..4968- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |