mRNA_Ecto-sp13_S_contig12687.2222.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12687.2222.1
Unique NamemRNA_Ecto-sp13_S_contig12687.2222.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12687.2222.1 vs. uniprot
Match: A0A6H5K3X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3X4_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 4.290e-34
Identity = 64/66 (96.97%), Postives = 66/66 (100.00%), Query Frame = 3
Query:    3 GNAAVVQSIVDKLPDIAREIAAPLAKTDKMVFIAGEGGGAGSRLTQDVGNILAQLPETVEALTGGN 200
            GNAAVVQSIVDKLPDIAREIAAPLAKTDKMVFIAG+GGGAGSRLTQDVGNILAQLPETV+ALTGGN
Sbjct:  110 GNAAVVQSIVDKLPDIAREIAAPLAKTDKMVFIAGDGGGAGSRLTQDVGNILAQLPETVQALTGGN 175          
BLAST of mRNA_Ecto-sp13_S_contig12687.2222.1 vs. uniprot
Match: D7G1I5_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I5_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 4.500e-31
Identity = 64/74 (86.49%), Postives = 69/74 (93.24%), Query Frame = 3
Query:    3 GNAAVVQSIVDKLPDIAREIAAPLAKTDKMVFIAGEGGGAGSRLTQDVGNILAQLPETVEALTGGNLFSAVKDF 224
            GNAAVVQSIVDKLPDIAREIAAPLAKTDKMVFIAGEGGGAGSRLTQDVGNILAQLPETVEALTG ++   ++ +
Sbjct:  337 GNAAVVQSIVDKLPDIAREIAAPLAKTDKMVFIAGEGGGAGSRLTQDVGNILAQLPETVEALTGVDITKGLERY 410          
BLAST of mRNA_Ecto-sp13_S_contig12687.2222.1 vs. uniprot
Match: D7G1I4_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I4_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 1.710e-29
Identity = 61/64 (95.31%), Postives = 64/64 (100.00%), Query Frame = 3
Query:    3 GNAAVVQSIVDKLPDIAREIAAPLAKTDKMVFIAGEGGGAGSRLTQDVGNILAQLPETVEALTG 194
            GNAA+VQSIVD+LPDIAREIAAPLAKTDKMVFIAGEGGGAGSRLTQDVG+ILAQLPETVEALTG
Sbjct:  359 GNAAIVQSIVDRLPDIAREIAAPLAKTDKMVFIAGEGGGAGSRLTQDVGSILAQLPETVEALTG 422          
BLAST of mRNA_Ecto-sp13_S_contig12687.2222.1 vs. uniprot
Match: UPI0009DD10DA (SPFH domain-containing protein n=1 Tax=Clostridium culturomicium TaxID=1499683 RepID=UPI0009DD10DA)

HSP 1 Score: 87.8 bits (216), Expect = 2.830e-18
Identity = 45/93 (48.39%), Postives = 65/93 (69.89%), Query Frame = 3
Query:    3 GNAAVVQSIVDKLPDIAREIAAPLAKTDKMVFIAGEGGGAGSRLTQDVGNILAQLPETVEALTGGNLFSAVKDFGRLCQAWSRPAKDASIAIS 281
            G+AA+VQ  VDKLP+IA+ ++ PL+KTDKMV I   G G  S+LT++V NI++QLPE V++LTG NL   +K+F    ++ S  A D+   +S
Sbjct:  380 GDAAIVQMFVDKLPEIAKNVSEPLSKTDKMVIIDNGGEGGASKLTKNVTNIMSQLPEVVDSLTGINLVDLIKNFTNKSESNSETASDSEGQVS 472          
BLAST of mRNA_Ecto-sp13_S_contig12687.2222.1 vs. uniprot
Match: A0A7C7QQR8_9CHLR (Flotillin family protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C7QQR8_9CHLR)

HSP 1 Score: 76.3 bits (186), Expect = 5.440e-16
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 3
Query:    6 NAAVVQSIVDKLPDIAREIAAPLAKTDKMVFI--AGEGGGAGSRLTQDVGNILAQLPETVEALTGGNLFSAVKD 221
             AA++Q ++D LP +A  IA PLAKT+++V I   G+ G   SR+TQDV NI+AQ+P TVEALTG +L   + D
Sbjct:   18 QAAIIQQLIDSLPKVAAAIAEPLAKTERIVIINAGGDSGAGASRITQDVANIIAQVPATVEALTGVDLVETISD 91          
BLAST of mRNA_Ecto-sp13_S_contig12687.2222.1 vs. uniprot
Match: A0A535IAW1_9CHLR (Flotillin family protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535IAW1_9CHLR)

HSP 1 Score: 76.3 bits (186), Expect = 5.730e-16
Identity = 40/76 (52.63%), Postives = 58/76 (76.32%), Query Frame = 3
Query:    6 NAAVVQSIVDKLPDIAREIAAPLAKTDKMVFIA---GEGGGAG-SRLTQDVGNILAQLPETVEALTGGNLFSAVKD 221
             AA++Q +VDK+P IA  I+ PLA+TD++V I+   G G GAG SRLTQD+ NI++Q+P TVEALTG ++  +++D
Sbjct:   23 EAAIIQQLVDKMPQIAEAISKPLAQTDRIVIISNGDGNGHGAGASRLTQDITNIISQVPATVEALTGVDVVGSIRD 98          
BLAST of mRNA_Ecto-sp13_S_contig12687.2222.1 vs. uniprot
Match: A0A3M2AF75_9CHLR (Flotillin family protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M2AF75_9CHLR)

HSP 1 Score: 79.3 bits (194), Expect = 2.420e-15
Identity = 42/87 (48.28%), Postives = 62/87 (71.26%), Query Frame = 3
Query:    6 NAAVVQSIVDKLPDIAREIAAPLAKTDKMVFIAGEGGGAG-SRLTQDVGNILAQLPETVEALTGGNLFSAVKDFGRLCQAWSRPAKD 263
             AAV+Q ++DKLP+IA  I+ PL+KT+++V ++  G GAG SR+TQD+ NI+AQ+P TVEALTG +L  A+     L +  +  AK+
Sbjct:  322 QAAVIQQLLDKLPEIAAAISQPLSKTERIVVVSNGGDGAGASRITQDITNIMAQVPATVEALTGMDLMGAISSLPGLKETGADGAKE 408          
BLAST of mRNA_Ecto-sp13_S_contig12687.2222.1 vs. uniprot
Match: UPI001EFF56A4 (SPFH domain-containing protein n=1 Tax=Turicibacter sp. TJ11 TaxID=2806443 RepID=UPI001EFF56A4)

HSP 1 Score: 79.3 bits (194), Expect = 2.710e-15
Identity = 39/74 (52.70%), Postives = 55/74 (74.32%), Query Frame = 3
Query:    3 GNAAVVQSIVDKLPDIAREIAAPLAKTDKMVFIAGEGGGAGSRLTQDVGNILAQLPETVEALTGGNLFSAVKDF 224
            G AAVVQ IV+KLP++A+ IA PLA+TDK+V I   GG   +R+TQ+V  I++++PE VE+LTG NL + +  F
Sbjct:  380 GEAAVVQMIVEKLPELAKNIAEPLAQTDKIVIIDNGGGNGAARVTQNVTKIMSEIPEVVESLTGINLINLISSF 453          
BLAST of mRNA_Ecto-sp13_S_contig12687.2222.1 vs. uniprot
Match: W6RTV8_9CLOT (PHB domain-containing protein n=2 Tax=Clostridium bornimense TaxID=1216932 RepID=W6RTV8_9CLOT)

HSP 1 Score: 79.3 bits (194), Expect = 2.740e-15
Identity = 36/76 (47.37%), Postives = 56/76 (73.68%), Query Frame = 3
Query:    3 GNAAVVQSIVDKLPDIAREIAAPLAKTDKMVFIAGEGGGAGSRLTQDVGNILAQLPETVEALTGGNLFSAVKDFGR 230
            G+AA++Q + DKLP+IAR IA PL++TDKMV I   G G  S++T++V N++A+LP+ + +LTG N+   +KD  +
Sbjct:  379 GDAAIIQMLADKLPEIARYIAEPLSRTDKMVVIDNGGQGGASKITKNVTNVMAELPDVINSLTGINIVDLIKDMSK 454          
BLAST of mRNA_Ecto-sp13_S_contig12687.2222.1 vs. uniprot
Match: A0A7R9SVU7_9CHLO (Flotillin-like n=1 Tax=Polyblepharides amylifera TaxID=1486889 RepID=A0A7R9SVU7_9CHLO)

HSP 1 Score: 75.9 bits (185), Expect = 4.460e-14
Identity = 38/72 (52.78%), Postives = 57/72 (79.17%), Query Frame = 3
Query:    3 GNAAVVQSIVDKLPDIAREIAAPLAKTDKMVFIAGEGGGAGSRLTQDVGNILAQLPETVEALTGGNLFSAVK 218
            G AA++QS+V++LP IA  +A PL KT+KM+FI+ + G AGS+LT+D+  I+A+LP+TVEAL+G ++  A K
Sbjct:  359 GTAALIQSVVEQLPAIASAVAEPLGKTEKMIFIS-QDGSAGSQLTKDITRIMAELPDTVEALSGVDIKKAFK 429          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12687.2222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3X4_9PHAE4.290e-3496.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1I5_ECTSI4.500e-3186.49PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G1I4_ECTSI1.710e-2995.31PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
UPI0009DD10DA2.830e-1848.39SPFH domain-containing protein n=1 Tax=Clostridium... [more]
A0A7C7QQR8_9CHLR5.440e-1651.35Flotillin family protein n=1 Tax=Anaerolineae bact... [more]
A0A535IAW1_9CHLR5.730e-1652.63Flotillin family protein (Fragment) n=1 Tax=Chloro... [more]
A0A3M2AF75_9CHLR2.420e-1548.28Flotillin family protein (Fragment) n=1 Tax=Chloro... [more]
UPI001EFF56A42.710e-1552.70SPFH domain-containing protein n=1 Tax=Turicibacte... [more]
W6RTV8_9CLOT2.740e-1547.37PHB domain-containing protein n=2 Tax=Clostridium ... [more]
A0A7R9SVU7_9CHLO4.460e-1452.78Flotillin-like n=1 Tax=Polyblepharides amylifera T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12687contigEcto-sp13_S_contig12687:4193..4968 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size282
Hectar predicted targeting categoryother localisation
Exons2
Cds size189
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462677.5528758-UTR-Ecto-sp13_S_contig12687:4192..42841681462677.5528758-UTR-Ecto-sp13_S_contig12687:4192..4284Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12687 4193..4284 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462677.565418-CDS-Ecto-sp13_S_contig12687:4284..43841681462677.565418-CDS-Ecto-sp13_S_contig12687:4284..4384Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12687 4285..4384 -
1681462677.5734594-CDS-Ecto-sp13_S_contig12687:4879..49681681462677.5734594-CDS-Ecto-sp13_S_contig12687:4879..4968Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12687 4880..4968 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12687.2222.1prot_Ecto-sp13_S_contig12687.2222.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12687 4285..4968 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12687.2222.1

>prot_Ecto-sp13_S_contig12687.2222.1 ID=prot_Ecto-sp13_S_contig12687.2222.1|Name=mRNA_Ecto-sp13_S_contig12687.2222.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
LETQRWCRASSTSCPISPGRSPLLSPRPTRWSSSLARAGVQAAALRKTLA
TSWRNSPKPLRH*
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mRNA from alignment at Ecto-sp13_S_contig12687:4193..4968-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12687.2222.1 ID=mRNA_Ecto-sp13_S_contig12687.2222.1|Name=mRNA_Ecto-sp13_S_contig12687.2222.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=776bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12687:4193..4968- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGAAACGCAGCGGTGGTGCAGAGCATCGTCGACAAGCTGCCCGATATC GCCAGGGAGATCGCCGCTCCTCTCGCCAAGACCGACAAGGTGCGTGACAC CCCCACGATTCTCGCAACGAACCCCCGTGTGTTTTGCCCCGCTTGGGGCA CGTGTGATCTCGAACAGCACGTGTTTCTGCTTGACTACGCGCATTTCGTT CGGCTCGTGTGGTTTTGGACTTGGGGGGCGCGATCCGAATCTGGGGGTTT GTCTTGTTTGAGCGATACGCGTCTTGAAGCGGGCGACGTATGCGCCCTAT TAGCGGCAGAGAACAAGATATCATCGGAGGAAAGGCTTGTCTCTGTGACG AGGAGAATACGTGTGAAACATGCCTACGCCTCCACGCTTTGGAATGTATC GTTCGCATGCAGCCACGCGGTATCGAGAGCAGTCCGCCCCCACCAAGCCT CGGCTGACCCGACCGTACGGTTCGAATACTCGCGTTCCGTGGAAAACTGC GCTCACGTCGATTACACTTCCTCTCCCTGTGATGTCTGTCCCGCAATTCC CATCTTCTGTGTGCGTGTCCTGATATCTGTGCAGATGGTCTTCATCGCTG GCGAGGGCGGGGGTGCAGGCAGCCGCCTTACGCAAGACGTTGGCAACATC CTGGCGCAACTCCCCGAAACCGTTGAGGCACTGACGGGAGGTAACTTATT CTCTGCCGTCAAAGACTTCGGTAGACTTTGCCAGGCCTGGTCACGACCAG CCAAAGACGCCTCGATCGCGATTTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12687:4193..4968-

>mRNA_Ecto-sp13_S_contig12687.2222.1 ID=mRNA_Ecto-sp13_S_contig12687.2222.1|Name=mRNA_Ecto-sp13_S_contig12687.2222.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12687:4193..4968- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGAAACGCAGCGGTGGTGCAGAGCATCGTCGACAAGCTGCCCGATATC
GCCAGGGAGATCGCCGCTCCTCTCGCCAAGACCGACAAGATGGTCTTCAT
CGCTGGCGAGGGCGGGGGTGCAGGCAGCCGCCTTACGCAAGACGTTGGCA
ACATCCTGGCGCAACTCCCCGAAACCGTTGAGGCACTGA
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