prot_Ecto-sp13_S_contig12686.2221.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12686.2221.1
Unique Nameprot_Ecto-sp13_S_contig12686.2221.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length233
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12686.2221.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 33..41
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..32
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..32
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 63..232
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 42..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12686contigEcto-sp13_S_contig12686:1374..2072 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12686.2221.1mRNA_Ecto-sp13_S_contig12686.2221.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12686 1204..2241 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12686.2221.1 ID=prot_Ecto-sp13_S_contig12686.2221.1|Name=mRNA_Ecto-sp13_S_contig12686.2221.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=233bp
MVVVVMCLCCHATWSRRRTTGHLAVEPTDARADVTPQEEAHTLLFFLFFN
VMVQRCCLLLAFECTATVRVMARGCVVFNSCRFFFVPRSRNTDGCHNTDT
DSAVSFPTHPRCDDTDGCDTNHRPVWKCKDHLDTNVIVPMVRLFRSGVSG
TTRWPCYGSTCRDPGAVRPMSGILKKRPQALRVQGTAVCLQYRVRGTHVR
MCQKRKKQTGSLLGIDKALVSVIVQPPCKSQA*
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