mRNA_Ecto-sp13_S_contig12686.2221.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12686.2221.1
Unique NamemRNA_Ecto-sp13_S_contig12686.2221.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12686.2221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12686contigEcto-sp13_S_contig12686:1204..2241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1038
Hectar predicted targeting categorysignal peptide
Exons1
Cds size699
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462677.502487-UTR-Ecto-sp13_S_contig12686:1203..13731681462677.502487-UTR-Ecto-sp13_S_contig12686:1203..1373Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12686 1204..1373 +
1681462677.5236826-UTR-Ecto-sp13_S_contig12686:2072..22411681462677.5236826-UTR-Ecto-sp13_S_contig12686:2072..2241Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12686 2073..2241 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462677.5128422-CDS-Ecto-sp13_S_contig12686:1373..20721681462677.5128422-CDS-Ecto-sp13_S_contig12686:1373..2072Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12686 1374..2072 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12686.2221.1prot_Ecto-sp13_S_contig12686.2221.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12686 1374..2072 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12686.2221.1

>prot_Ecto-sp13_S_contig12686.2221.1 ID=prot_Ecto-sp13_S_contig12686.2221.1|Name=mRNA_Ecto-sp13_S_contig12686.2221.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=233bp
MVVVVMCLCCHATWSRRRTTGHLAVEPTDARADVTPQEEAHTLLFFLFFN
VMVQRCCLLLAFECTATVRVMARGCVVFNSCRFFFVPRSRNTDGCHNTDT
DSAVSFPTHPRCDDTDGCDTNHRPVWKCKDHLDTNVIVPMVRLFRSGVSG
TTRWPCYGSTCRDPGAVRPMSGILKKRPQALRVQGTAVCLQYRVRGTHVR
MCQKRKKQTGSLLGIDKALVSVIVQPPCKSQA*
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mRNA from alignment at Ecto-sp13_S_contig12686:1204..2241+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12686.2221.1 ID=mRNA_Ecto-sp13_S_contig12686.2221.1|Name=mRNA_Ecto-sp13_S_contig12686.2221.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1038bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12686:1204..2241+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCGAGGCTAGTACAAATAGTGCTAATGAGCTCGTCCGGGAGAACATAGC
CCGCTCACGCCGGTGTGTTGGTTTTCGCACATGTGACTGACGTCTATGTA
CGTGGGTTCGATGGGGTGTAGAGGTGTTTTTTCGCGATAACAAGTTGGCG
TTCACCTTTTTGTGTTGTTGATGGTCGTGGTTGTGATGTGTCTGTGTTGT
CACGCCACCTGGTCAAGACGTCGGACTACGGGCCACCTTGCGGTAGAGCC
TACGGACGCCCGAGCCGATGTCACCCCACAGGAGGAAGCTCACACATTGT
TATTTTTTCTTTTTTTTAATGTGATGGTGCAAAGATGTTGTTTGTTACTT
GCATTCGAATGCACGGCAACTGTGCGTGTTATGGCACGGGGTTGCGTAGT
GTTCAATTCTTGTAGATTTTTTTTTGTACCCCGGTCGCGTAACACCGATG
GGTGCCATAACACCGATACCGATTCGGCAGTGTCATTTCCAACGCACCCA
CGGTGCGATGACACCGATGGGTGCGATACGAATCACCGACCTGTTTGGAA
ATGTAAGGACCATTTGGATACCAATGTGATCGTCCCAATGGTCCGCTTAT
TTCGGAGTGGAGTGAGTGGTACTACACGGTGGCCCTGCTACGGTTCTACG
TGCAGGGACCCCGGTGCGGTGAGACCGATGAGTGGGATACTGAAGAAACG
ACCACAGGCGCTCCGGGTACAAGGAACGGCCGTTTGTTTGCAGTACAGGG
TCCGGGGTACGCATGTACGCATGTGTCAAAAACGAAAGAAGCAGACAGGT
TCCCTCCTGGGAATAGATAAAGCGCTAGTGTCTGTCATCGTCCAGCCTCC
TTGTAAGTCGCAAGCCTAATTTGTTGGTTGGCGCTTCCCTCTGTCTGTCT
TCCTCACCAAGCACGGCGGTAGTACAGGTAGGCTAGCGGCCTTGATGATC
CTTTTTTTGTTCGGTCGGTTGGAGGTGTAGGATGTGTGGTGCCGTGTGCT
TGCTTGGTAGAGTGCATTCGAGACACCGATTTCCGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12686:1204..2241+

>mRNA_Ecto-sp13_S_contig12686.2221.1 ID=mRNA_Ecto-sp13_S_contig12686.2221.1|Name=mRNA_Ecto-sp13_S_contig12686.2221.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=699bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12686:1204..2241+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCGTGGTTGTGATGTGTCTGTGTTGTCACGCCACCTGGTCAAGACG
TCGGACTACGGGCCACCTTGCGGTAGAGCCTACGGACGCCCGAGCCGATG
TCACCCCACAGGAGGAAGCTCACACATTGTTATTTTTTCTTTTTTTTAAT
GTGATGGTGCAAAGATGTTGTTTGTTACTTGCATTCGAATGCACGGCAAC
TGTGCGTGTTATGGCACGGGGTTGCGTAGTGTTCAATTCTTGTAGATTTT
TTTTTGTACCCCGGTCGCGTAACACCGATGGGTGCCATAACACCGATACC
GATTCGGCAGTGTCATTTCCAACGCACCCACGGTGCGATGACACCGATGG
GTGCGATACGAATCACCGACCTGTTTGGAAATGTAAGGACCATTTGGATA
CCAATGTGATCGTCCCAATGGTCCGCTTATTTCGGAGTGGAGTGAGTGGT
ACTACACGGTGGCCCTGCTACGGTTCTACGTGCAGGGACCCCGGTGCGGT
GAGACCGATGAGTGGGATACTGAAGAAACGACCACAGGCGCTCCGGGTAC
AAGGAACGGCCGTTTGTTTGCAGTACAGGGTCCGGGGTACGCATGTACGC
ATGTGTCAAAAACGAAAGAAGCAGACAGGTTCCCTCCTGGGAATAGATAA
AGCGCTAGTGTCTGTCATCGTCCAGCCTCCTTGTAAGTCGCAAGCCTAA
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