mRNA_Ecto-sp13_S_contig12683.2220.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12683.2220.1 vs. uniprot
Match: D7FWD8_ECTSI (SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD8_ECTSI) HSP 1 Score: 357 bits (916), Expect = 1.980e-117 Identity = 230/373 (61.66%), Postives = 242/373 (64.88%), Query Frame = 1
Query: 1 RHMTREAFRQRGAGGGGVGTGHDGEDSRDPGGXXASSGSS-QDAGPSSVAERWNVSGXXXXXXXXXXXXXXXXXXXXXXXXXXXX-DAAPAVVGSGGRTKANDGCMDAXXXXXXXXXXXXVHMCSSSFFTKLVERDIDEFDATYSGVKRWSRHVDLFSMKFVMVPVVEDAHWSLVCLCNLDKLEVGKGSVGYRSDDARPCMLFLDSLGSKGHDSVDIHEYLLRYLQAKWKDTGRDELVFDQDVLPLVCPQAPTQTNAYDCGVYVLRFAK---------EMCQKWPVVTAADVNDGMQAHFNPELFSPSDITDERRLLGKLLQDCKIRYEXXXXXXXXXXXXXXXXXXXXXXXXXXXEVEEPPIGLSSGELSDS 1086
RHMTREAFRQRG GGGGVGTGHDGEDSRDPGG ASSGSS QDAGP AERWN XXXXXXXXXX DAA AVVGSGGRTK N GCMD VH+ SSSFFTKLVE+DIDEF+A Y GVKRWSRHVDLFSMKFVMVPVVED HW L CLCNL+KLE AKWKDTGR +LVFD DVLPLVCPQAPTQ NAY GVYVLRFAK EM QKWPVV A VNDGMQAHFNPELFSPSDIT+ERR+LGKLLQDCK+RY+ XXXXXXXXX EVEEPP +SSG+LSD+
Sbjct: 129 RHMTREAFRQRGTGGGGVGTGHDGEDSRDPGGEGASSGSSSQDAGPRGDAERWNGGXXXXXXXXXXXQGGDARGLAAAAAPACDTGDAAAAVVGSGGRTKPNCGCMDETK----------VHIFSSSFFTKLVEKDIDEFNAAYGGVKRWSRHVDLFSMKFVMVPVVEDEHWRLACLCNLNKLE------------------------------------------AKWKDTGRGDLVFDPDVLPLVCPQAPTQPNAYARGVYVLRFAKGSSSLCPCMEMYQKWPVVKEAGVNDGMQAHFNPELFSPSDITEERRMLGKLLQDCKVRYKREEXXXXXXXXXASGNTHAGSNSGSEVEVEEPPPTMSSGDLSDA 449
BLAST of mRNA_Ecto-sp13_S_contig12683.2220.1 vs. uniprot
Match: D8LDN6_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN6_ECTSI) HSP 1 Score: 287 bits (735), Expect = 6.070e-84 Identity = 139/223 (62.33%), Postives = 170/223 (76.23%), Query Frame = 1
Query: 286 RTKANDGCMDAXXXXXXXXXXXXVHMCSSSFFTKLVERDIDEFDATYSGVKRWSRHVDLFSMKFVMVPVVEDAHWSLVCLCNLDKLEVGKGSVGYRSDDARPCMLFLDSLGSKGHDSVDIHEYLLRYLQAKWKDTGRDELVFDQDVLPLVCPQAPTQTNAYDCGVYVLRFAKEMCQKWPVVTAADVNDGMQAHFNPELFSPSDITDERRLLGKLLQDCKIRYE 954
R+KA G MD VH+ +S FFTKL E I +FDA YS V+ W+R+VDLF KFV+VPVVED HWSL CLCNLDKLEV K + Y+SD+A+PCMLFLDSL H + I++YL RYLQAKWK+TGR E++FDQDV PLV P+ PTQ N DCGVYVLR+AKE+CQ+WPVVTAA+V + + AHF PELFSPSDIT+ERR+L +LL++CK+RYE
Sbjct: 388 RSKAKGGSMD----------DGNVHVFTSHFFTKLTESKIYDFDAAYSKVQHWTRNVDLFKKKFVLVPVVEDMHWSLACLCNLDKLEVDKEAADYQSDEAQPCMLFLDSLDM--HYASRIYDYLRRYLQAKWKETGRGEMLFDQDVFPLVRPRVPTQINGCDCGVYVLRYAKEICQQWPVVTAAEVKNRLSAHFRPELFSPSDITEERRMLRELLENCKVRYE 598
BLAST of mRNA_Ecto-sp13_S_contig12683.2220.1 vs. uniprot
Match: A0A6H5KTD8_9PHAE (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD8_9PHAE) HSP 1 Score: 281 bits (720), Expect = 1.100e-81 Identity = 136/222 (61.26%), Postives = 167/222 (75.23%), Query Frame = 1
Query: 289 TKANDGCMDAXXXXXXXXXXXXVHMCSSSFFTKLVERDIDEFDATYSGVKRWSRHVDLFSMKFVMVPVVEDAHWSLVCLCNLDKLEVGKGSVGYRSDDARPCMLFLDSLGSKGHDSVDIHEYLLRYLQAKWKDTGRDELVFDQDVLPLVCPQAPTQTNAYDCGVYVLRFAKEMCQKWPVVTAADVNDGMQAHFNPELFSPSDITDERRLLGKLLQDCKIRYE 954
+KA G MD VH+ +S FFTKL E +I +FDA YS V+ W+R VDLF KFV+VPVVED HWSL CLCNLDKLEV K + Y+SD+A+PCMLFLDSL H + I++YL RYLQAKWK+TGR E++FDQ V PLV P+ PTQ N DCGVYVLR+AKE+CQ+WPVVT A+V + + AHF PELFSPSDIT+ERR+L +LL++CK+RYE
Sbjct: 691 SKAKGGSMD----------DGKVHVFTSHFFTKLTESEIYDFDAAYSKVQHWTRSVDLFKKKFVLVPVVEDLHWSLACLCNLDKLEVDKEAADYQSDEAQPCMLFLDSLDM--HYASRIYDYLRRYLQAKWKETGRGEMLFDQHVFPLVRPRVPTQINGCDCGVYVLRYAKEICQQWPVVTVAEVKNRLSAHFRPELFSPSDITEERRMLRELLENCKVRYE 900
BLAST of mRNA_Ecto-sp13_S_contig12683.2220.1 vs. uniprot
Match: A0A6H5JQ96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ96_9PHAE) HSP 1 Score: 145 bits (365), Expect = 1.200e-39 Identity = 71/94 (75.53%), Postives = 78/94 (82.98%), Query Frame = 1
Query: 664 YLQAKWKDTGRDELVFDQDVLPLVCPQAPTQTNAYDCGVYVLRFAKEM-----CQKWPVVTAADVNDGMQAHFNPELFSPSDITDERRLLGKLL 930
YLQAKWK++ R ELVF VLPLVCPQAPTQTNAYD GVYVLRFAK C KWPVVTAADVNDGMQAHFN +LF+ SDIT+ERR+LGKL+
Sbjct: 4 YLQAKWKESWRGELVFSAVVLPLVCPQAPTQTNAYDGGVYVLRFAKARSRLCPCMKWPVVTAADVNDGMQAHFNLQLFNASDITEERRMLGKLV 97
BLAST of mRNA_Ecto-sp13_S_contig12683.2220.1 vs. uniprot
Match: D7FTK7_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK7_ECTSI) HSP 1 Score: 135 bits (341), Expect = 2.650e-35 Identity = 65/120 (54.17%), Postives = 83/120 (69.17%), Query Frame = 1
Query: 595 MLFLDSLGSKGHDSVDIHEYLLRYLQAKWKDTGRDELVFDQDVLPLVCPQAPTQTNAYDCGVYVLRFAKEMCQKWPVVTAADVNDGMQAHFNPELFSPSDITDERRLLGKLLQDCKIRYE 954
MLF DSLG+ H I E ++ YLQ W R E D+D+LPLV ++P Q N DCG+ VLR AK++ Q+WP+ T A+V+DGMQ HF PELFSPSDI++ERR+L +LLQ K RYE
Sbjct: 1 MLFFDSLGT--HHPAKIQENIIAYLQEAWSSNDRGEATVDKDLLPLVITESPQQGNGCDCGILVLRNAKDILQEWPIATQAEVDDGMQKHFTPELFSPSDISNERRMLRQLLQTYKDRYE 118
BLAST of mRNA_Ecto-sp13_S_contig12683.2220.1 vs. uniprot
Match: F0YQ64_AURAN (ULP_PROTEASE domain-containing protein n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQ64_AURAN) HSP 1 Score: 117 bits (294), Expect = 1.650e-25 Identity = 85/238 (35.71%), Postives = 115/238 (48.32%), Query Frame = 1
Query: 355 VHMCSSSFFTKLVERDI---DEFDATYSGVKRWSRHVDLFSMKFVMVPVVEDAHWSLVCLCNLDKL----------------EVGKGSVGYRSD----DA-----------RPCMLFLDSLGSKGHDSVDIHEYLLRYLQAKWKDTGRDE----LVFDQDVLPLVCPQAPTQTNAYDCGVYVLRFAKEMCQK------WPVVTAADVNDGMQAHFNPELFSPSDITDERRLLGKLLQD 936
VH SS FFTKL E + D D Y V+RW+R VD+FS KF++VP+VE HWSL +C+ L E +G SD DA RPC++F+DSL K H + + +L +L+ +W DE L D LPLV P+ P QTN+ DCGVYVLR+A+E + VT A V+D AH F+ +++ R L +D
Sbjct: 306 VHAFSSHFFTKLQEEGLRAPDGKDRAYDRVERWTRGVDVFSKKFLVVPIVEHLHWSLAIVCHPGALVRVVRDRIAREEEEAEERARGEDDDESDAPRIDATAEPSGAPPPPRPCIIFMDSL--KMHSAPKVERFLRAFLELEWAKRKPDEPELKLKLKVD-LPLVVPKVPMQTNSCDCGVYVLRYAEEFLSRAVGAAPTVAVTEAAVDDKFAAHDFASWFTAAEVAAMRGDLKAAAED 540
BLAST of mRNA_Ecto-sp13_S_contig12683.2220.1 vs. uniprot
Match: A0A7S3ZZX5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZX5_9STRA) HSP 1 Score: 110 bits (276), Expect = 6.780e-24 Identity = 79/237 (33.33%), Postives = 118/237 (49.79%), Query Frame = 1
Query: 355 VHMCSSSFFTKLVERDI--------DEFDATYSGVKRWSRHVDLFSMKFVMVPVVEDAHWSLVCLCNLDKL-------EVGKGSVGYRSDD-------ARPCMLFLDSLGSKGHDSVDIHEYLLRYLQAKWKDTGRDELVFD------------QDVLPLVCPQAPTQTNAYDCGVYVLRFAKEMCQKWP------VVTAADVNDGMQAHFNPELFSPSDITDERRLLGKLLQDCKI 945
VH SS FFTKL E D ++ ++ V+RW+R VD+F+ KF++VPVVED HWSL +C+ +L E + VG D+ ARPC++ +DSL + H + I ++L +L+ +W+ DE F D+L L P+ P QTN+ DCGVY LR+ +E + V DV+ + H F+ DI + RR + KL D ++
Sbjct: 100 VHAFSSHFFTKLREGDSRGKLKPDSEKAQRAHARVERWTRGVDVFAKKFLLVPVVEDLHWSLAIVCHPGELAKRAVARERRELDVGATEDEXXXXDCPARPCVIHMDSL--RMHSAKKIEKWLRCFLEMEWRKRHSDEEPFTLRERTARAGGPPADLL-LAMPKVPQQTNSCDCGVYTLRYGQEFLARAVCRGARLAVDGRDVSLCFRDHDFEAWFTGRDIAEMRRDIKKLAADLEL 333
BLAST of mRNA_Ecto-sp13_S_contig12683.2220.1 vs. uniprot
Match: A0A7S4A0P2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A0P2_9STRA) HSP 1 Score: 105 bits (263), Expect = 6.550e-22 Identity = 76/232 (32.76%), Postives = 115/232 (49.57%), Query Frame = 1
Query: 370 SSFFTKLVERDI--------DEFDATYSGVKRWSRHVDLFSMKFVMVPVVEDAHWSLVCLCNLDKL-------EVGKGSVGYRSDD-------ARPCMLFLDSLGSKGHDSVDIHEYLLRYLQAKWKDTGRDELVFD------------QDVLPLVCPQAPTQTNAYDCGVYVLRFAKEMCQKWP------VVTAADVNDGMQAHFNPELFSPSDITDERRLLGKLLQDCKI 945
S FFTKL E D ++ ++ V+RW+R VD+F+ KF++VPVVED HWSL +C+ +L E + VG D+ ARPC++ +DSL + H + I ++L +L+ +W+ DE F D+L L P+ P QTN+ DCGVY LR+ +E + V DV+ + H F+ DI + RR + KL D ++
Sbjct: 137 SHFFTKLREGDSRGKLKPDSEKAQRAHARVERWTRGVDVFAKKFLLVPVVEDLHWSLAIVCHPGELAKRAVARERRELDVGATEDEXXXXDCPARPCVIHMDSL--RMHSAKKIEKWLRCFLEMEWRKRHSDEEPFTLRERTARAGGPPADLL-LAMPKVPQQTNSCDCGVYTLRYGQEFLARAVCRGARLAVDGRDVSLCFRDHDFEAWFTGRDIAEMRRDIKKLAADLEL 365
BLAST of mRNA_Ecto-sp13_S_contig12683.2220.1 vs. uniprot
Match: A0A8J2SX84_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SX84_9STRA) HSP 1 Score: 106 bits (264), Expect = 1.570e-21 Identity = 76/233 (32.62%), Postives = 116/233 (49.79%), Query Frame = 1
Query: 367 SSSFFTKLVERDI--------DEFDATYSGVKRWSRHVDLFSMKFVMVPVVEDAHWSLVCLCNLDKL-------EVGKGSVGYRSDD-------ARPCMLFLDSLGSKGHDSVDIHEYLLRYLQAKWKDTGRDELVFD------------QDVLPLVCPQAPTQTNAYDCGVYVLRFAKEMCQKWP------VVTAADVNDGMQAHFNPELFSPSDITDERRLLGKLLQDCKI 945
+S FFTKL E D ++ ++ V+RW+R VD+F+ KF++VPVVED HWSL +C+ +L E + VG D+ ARPC++ +DSL + H + I ++L +L+ +W+ DE F D+L L P+ P QTN+ DCGVY LR+ +E + V DV+ + H F+ DI + RR + KL D ++
Sbjct: 295 ASHFFTKLREGDSRGKLKPDSEKAQRAHARVERWTRGVDVFAKKFLLVPVVEDLHWSLAIVCHPGELAKRAVARERRELDVGATEDEXXXXDCPARPCVIHMDSL--RMHSAKKIEKWLRCFLEMEWRKRHSDEEPFTLRERTARAGGPPADLL-LAMPKVPQQTNSCDCGVYTLRYGQEFLARAVCRGARLAVDGRDVSLCFRDHDFEAWFTGRDIAEMRRDIKKLAADLEL 524
BLAST of mRNA_Ecto-sp13_S_contig12683.2220.1 vs. uniprot
Match: A0A7S3JWX9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWX9_9STRA) HSP 1 Score: 105 bits (262), Expect = 2.560e-21 Identity = 75/240 (31.25%), Postives = 126/240 (52.50%), Query Frame = 1
Query: 355 VHMCSSSFFTKLVERDIDE--FDATYSGVKRWSRHVDLFSMKFVMVPVVEDAHWSLVCLCNLDKL----EVGKGSV---GYRSDDA---------------RPCMLFLDSLGSKGHDSVDIHEYLLRYLQAKW-KDTGRD-ELVFDQDVLPLVCP-QAPTQTNAYDCGVYVLRFAKEMCQKWPVVTAADVNDGMQ------------AHFN-PELFSPSDITDERRLLGKLLQDCKIRYE 954
VH+ SS FFTKL E I F + V+RW+R +D+F +KF+MVPVV+ HWSL +C+ D++ E V G +DDA +PC++F+DSL K H ++ + + +L ++ K G+D + +F+ +PL+ + P Q N +DCG++VLR+A+E+ +++ + DG Q AHF+ F +DIT R+ + L++ + ++
Sbjct: 150 VHVFSSHFFTKLTEIKITTRTFQEAHKRVERWTRRLDIFKLKFIMVPVVQQLHWSLAVICHPDRIVDMCETHINHVKKKGTTADDAVDIDVDDEDEEIDPEQPCVVFMDSL--KMHKENEVFKAIKAWLCEEYRKKKGKDIQCLFETKKIPLIADLKLPRQKNGWDCGLFVLRYAREL------LSSLFLGDGPQLRISAKAHSERFAHFDFASWFRQADITRMRKEVKVLIKSLREEHD 381 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12683.2220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12683.2220.1 >prot_Ecto-sp13_S_contig12683.2220.1 ID=prot_Ecto-sp13_S_contig12683.2220.1|Name=mRNA_Ecto-sp13_S_contig12683.2220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=360bp MTREAFRQRGAGGGGVGTGHDGEDSRDPGGGGASSGSSQDAGPSSVAERWback to top mRNA from alignment at Ecto-sp13_S_contig12683:1516..4967+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12683.2220.1 ID=mRNA_Ecto-sp13_S_contig12683.2220.1|Name=mRNA_Ecto-sp13_S_contig12683.2220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3452bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12683:1516..4967+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12683:1516..4967+ >mRNA_Ecto-sp13_S_contig12683.2220.1 ID=mRNA_Ecto-sp13_S_contig12683.2220.1|Name=mRNA_Ecto-sp13_S_contig12683.2220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1080bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12683:1516..4967+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |