mRNA_Ecto-sp13_S_contig12683.2220.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12683.2220.1
Unique NamemRNA_Ecto-sp13_S_contig12683.2220.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12683.2220.1 vs. uniprot
Match: D7FWD8_ECTSI (SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD8_ECTSI)

HSP 1 Score: 357 bits (916), Expect = 1.980e-117
Identity = 230/373 (61.66%), Postives = 242/373 (64.88%), Query Frame = 1
Query:    1 RHMTREAFRQRGAGGGGVGTGHDGEDSRDPGGXXASSGSS-QDAGPSSVAERWNVSGXXXXXXXXXXXXXXXXXXXXXXXXXXXX-DAAPAVVGSGGRTKANDGCMDAXXXXXXXXXXXXVHMCSSSFFTKLVERDIDEFDATYSGVKRWSRHVDLFSMKFVMVPVVEDAHWSLVCLCNLDKLEVGKGSVGYRSDDARPCMLFLDSLGSKGHDSVDIHEYLLRYLQAKWKDTGRDELVFDQDVLPLVCPQAPTQTNAYDCGVYVLRFAK---------EMCQKWPVVTAADVNDGMQAHFNPELFSPSDITDERRLLGKLLQDCKIRYEXXXXXXXXXXXXXXXXXXXXXXXXXXXEVEEPPIGLSSGELSDS 1086
            RHMTREAFRQRG GGGGVGTGHDGEDSRDPGG  ASSGSS QDAGP   AERWN   XXXXXXXXXX                   DAA AVVGSGGRTK N GCMD             VH+ SSSFFTKLVE+DIDEF+A Y GVKRWSRHVDLFSMKFVMVPVVED HW L CLCNL+KLE                                          AKWKDTGR +LVFD DVLPLVCPQAPTQ NAY  GVYVLRFAK         EM QKWPVV  A VNDGMQAHFNPELFSPSDIT+ERR+LGKLLQDCK+RY+   XXXXXXXXX               EVEEPP  +SSG+LSD+
Sbjct:  129 RHMTREAFRQRGTGGGGVGTGHDGEDSRDPGGEGASSGSSSQDAGPRGDAERWNGGXXXXXXXXXXXQGGDARGLAAAAAPACDTGDAAAAVVGSGGRTKPNCGCMDETK----------VHIFSSSFFTKLVEKDIDEFNAAYGGVKRWSRHVDLFSMKFVMVPVVEDEHWRLACLCNLNKLE------------------------------------------AKWKDTGRGDLVFDPDVLPLVCPQAPTQPNAYARGVYVLRFAKGSSSLCPCMEMYQKWPVVKEAGVNDGMQAHFNPELFSPSDITEERRMLGKLLQDCKVRYKREEXXXXXXXXXASGNTHAGSNSGSEVEVEEPPPTMSSGDLSDA 449          
BLAST of mRNA_Ecto-sp13_S_contig12683.2220.1 vs. uniprot
Match: D8LDN6_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN6_ECTSI)

HSP 1 Score: 287 bits (735), Expect = 6.070e-84
Identity = 139/223 (62.33%), Postives = 170/223 (76.23%), Query Frame = 1
Query:  286 RTKANDGCMDAXXXXXXXXXXXXVHMCSSSFFTKLVERDIDEFDATYSGVKRWSRHVDLFSMKFVMVPVVEDAHWSLVCLCNLDKLEVGKGSVGYRSDDARPCMLFLDSLGSKGHDSVDIHEYLLRYLQAKWKDTGRDELVFDQDVLPLVCPQAPTQTNAYDCGVYVLRFAKEMCQKWPVVTAADVNDGMQAHFNPELFSPSDITDERRLLGKLLQDCKIRYE 954
            R+KA  G MD             VH+ +S FFTKL E  I +FDA YS V+ W+R+VDLF  KFV+VPVVED HWSL CLCNLDKLEV K +  Y+SD+A+PCMLFLDSL    H +  I++YL RYLQAKWK+TGR E++FDQDV PLV P+ PTQ N  DCGVYVLR+AKE+CQ+WPVVTAA+V + + AHF PELFSPSDIT+ERR+L +LL++CK+RYE
Sbjct:  388 RSKAKGGSMD----------DGNVHVFTSHFFTKLTESKIYDFDAAYSKVQHWTRNVDLFKKKFVLVPVVEDMHWSLACLCNLDKLEVDKEAADYQSDEAQPCMLFLDSLDM--HYASRIYDYLRRYLQAKWKETGRGEMLFDQDVFPLVRPRVPTQINGCDCGVYVLRYAKEICQQWPVVTAAEVKNRLSAHFRPELFSPSDITEERRMLRELLENCKVRYE 598          
BLAST of mRNA_Ecto-sp13_S_contig12683.2220.1 vs. uniprot
Match: A0A6H5KTD8_9PHAE (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD8_9PHAE)

HSP 1 Score: 281 bits (720), Expect = 1.100e-81
Identity = 136/222 (61.26%), Postives = 167/222 (75.23%), Query Frame = 1
Query:  289 TKANDGCMDAXXXXXXXXXXXXVHMCSSSFFTKLVERDIDEFDATYSGVKRWSRHVDLFSMKFVMVPVVEDAHWSLVCLCNLDKLEVGKGSVGYRSDDARPCMLFLDSLGSKGHDSVDIHEYLLRYLQAKWKDTGRDELVFDQDVLPLVCPQAPTQTNAYDCGVYVLRFAKEMCQKWPVVTAADVNDGMQAHFNPELFSPSDITDERRLLGKLLQDCKIRYE 954
            +KA  G MD             VH+ +S FFTKL E +I +FDA YS V+ W+R VDLF  KFV+VPVVED HWSL CLCNLDKLEV K +  Y+SD+A+PCMLFLDSL    H +  I++YL RYLQAKWK+TGR E++FDQ V PLV P+ PTQ N  DCGVYVLR+AKE+CQ+WPVVT A+V + + AHF PELFSPSDIT+ERR+L +LL++CK+RYE
Sbjct:  691 SKAKGGSMD----------DGKVHVFTSHFFTKLTESEIYDFDAAYSKVQHWTRSVDLFKKKFVLVPVVEDLHWSLACLCNLDKLEVDKEAADYQSDEAQPCMLFLDSLDM--HYASRIYDYLRRYLQAKWKETGRGEMLFDQHVFPLVRPRVPTQINGCDCGVYVLRYAKEICQQWPVVTVAEVKNRLSAHFRPELFSPSDITEERRMLRELLENCKVRYE 900          
BLAST of mRNA_Ecto-sp13_S_contig12683.2220.1 vs. uniprot
Match: A0A6H5JQ96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ96_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 1.200e-39
Identity = 71/94 (75.53%), Postives = 78/94 (82.98%), Query Frame = 1
Query:  664 YLQAKWKDTGRDELVFDQDVLPLVCPQAPTQTNAYDCGVYVLRFAKEM-----CQKWPVVTAADVNDGMQAHFNPELFSPSDITDERRLLGKLL 930
            YLQAKWK++ R ELVF   VLPLVCPQAPTQTNAYD GVYVLRFAK       C KWPVVTAADVNDGMQAHFN +LF+ SDIT+ERR+LGKL+
Sbjct:    4 YLQAKWKESWRGELVFSAVVLPLVCPQAPTQTNAYDGGVYVLRFAKARSRLCPCMKWPVVTAADVNDGMQAHFNLQLFNASDITEERRMLGKLV 97          
BLAST of mRNA_Ecto-sp13_S_contig12683.2220.1 vs. uniprot
Match: D7FTK7_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK7_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 2.650e-35
Identity = 65/120 (54.17%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  595 MLFLDSLGSKGHDSVDIHEYLLRYLQAKWKDTGRDELVFDQDVLPLVCPQAPTQTNAYDCGVYVLRFAKEMCQKWPVVTAADVNDGMQAHFNPELFSPSDITDERRLLGKLLQDCKIRYE 954
            MLF DSLG+  H    I E ++ YLQ  W    R E   D+D+LPLV  ++P Q N  DCG+ VLR AK++ Q+WP+ T A+V+DGMQ HF PELFSPSDI++ERR+L +LLQ  K RYE
Sbjct:    1 MLFFDSLGT--HHPAKIQENIIAYLQEAWSSNDRGEATVDKDLLPLVITESPQQGNGCDCGILVLRNAKDILQEWPIATQAEVDDGMQKHFTPELFSPSDISNERRMLRQLLQTYKDRYE 118          
BLAST of mRNA_Ecto-sp13_S_contig12683.2220.1 vs. uniprot
Match: F0YQ64_AURAN (ULP_PROTEASE domain-containing protein n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQ64_AURAN)

HSP 1 Score: 117 bits (294), Expect = 1.650e-25
Identity = 85/238 (35.71%), Postives = 115/238 (48.32%), Query Frame = 1
Query:  355 VHMCSSSFFTKLVERDI---DEFDATYSGVKRWSRHVDLFSMKFVMVPVVEDAHWSLVCLCNLDKL----------------EVGKGSVGYRSD----DA-----------RPCMLFLDSLGSKGHDSVDIHEYLLRYLQAKWKDTGRDE----LVFDQDVLPLVCPQAPTQTNAYDCGVYVLRFAKEMCQK------WPVVTAADVNDGMQAHFNPELFSPSDITDERRLLGKLLQD 936
            VH  SS FFTKL E  +   D  D  Y  V+RW+R VD+FS KF++VP+VE  HWSL  +C+   L                E  +G     SD    DA           RPC++F+DSL  K H +  +  +L  +L+ +W     DE    L    D LPLV P+ P QTN+ DCGVYVLR+A+E   +         VT A V+D   AH     F+ +++   R  L    +D
Sbjct:  306 VHAFSSHFFTKLQEEGLRAPDGKDRAYDRVERWTRGVDVFSKKFLVVPIVEHLHWSLAIVCHPGALVRVVRDRIAREEEEAEERARGEDDDESDAPRIDATAEPSGAPPPPRPCIIFMDSL--KMHSAPKVERFLRAFLELEWAKRKPDEPELKLKLKVD-LPLVVPKVPMQTNSCDCGVYVLRYAEEFLSRAVGAAPTVAVTEAAVDDKFAAHDFASWFTAAEVAAMRGDLKAAAED 540          
BLAST of mRNA_Ecto-sp13_S_contig12683.2220.1 vs. uniprot
Match: A0A7S3ZZX5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZX5_9STRA)

HSP 1 Score: 110 bits (276), Expect = 6.780e-24
Identity = 79/237 (33.33%), Postives = 118/237 (49.79%), Query Frame = 1
Query:  355 VHMCSSSFFTKLVERDI--------DEFDATYSGVKRWSRHVDLFSMKFVMVPVVEDAHWSLVCLCNLDKL-------EVGKGSVGYRSDD-------ARPCMLFLDSLGSKGHDSVDIHEYLLRYLQAKWKDTGRDELVFD------------QDVLPLVCPQAPTQTNAYDCGVYVLRFAKEMCQKWP------VVTAADVNDGMQAHFNPELFSPSDITDERRLLGKLLQDCKI 945
            VH  SS FFTKL E D         ++    ++ V+RW+R VD+F+ KF++VPVVED HWSL  +C+  +L       E  +  VG   D+       ARPC++ +DSL  + H +  I ++L  +L+ +W+    DE  F              D+L L  P+ P QTN+ DCGVY LR+ +E   +         V   DV+   + H     F+  DI + RR + KL  D ++
Sbjct:  100 VHAFSSHFFTKLREGDSRGKLKPDSEKAQRAHARVERWTRGVDVFAKKFLLVPVVEDLHWSLAIVCHPGELAKRAVARERRELDVGATEDEXXXXDCPARPCVIHMDSL--RMHSAKKIEKWLRCFLEMEWRKRHSDEEPFTLRERTARAGGPPADLL-LAMPKVPQQTNSCDCGVYTLRYGQEFLARAVCRGARLAVDGRDVSLCFRDHDFEAWFTGRDIAEMRRDIKKLAADLEL 333          
BLAST of mRNA_Ecto-sp13_S_contig12683.2220.1 vs. uniprot
Match: A0A7S4A0P2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A0P2_9STRA)

HSP 1 Score: 105 bits (263), Expect = 6.550e-22
Identity = 76/232 (32.76%), Postives = 115/232 (49.57%), Query Frame = 1
Query:  370 SSFFTKLVERDI--------DEFDATYSGVKRWSRHVDLFSMKFVMVPVVEDAHWSLVCLCNLDKL-------EVGKGSVGYRSDD-------ARPCMLFLDSLGSKGHDSVDIHEYLLRYLQAKWKDTGRDELVFD------------QDVLPLVCPQAPTQTNAYDCGVYVLRFAKEMCQKWP------VVTAADVNDGMQAHFNPELFSPSDITDERRLLGKLLQDCKI 945
            S FFTKL E D         ++    ++ V+RW+R VD+F+ KF++VPVVED HWSL  +C+  +L       E  +  VG   D+       ARPC++ +DSL  + H +  I ++L  +L+ +W+    DE  F              D+L L  P+ P QTN+ DCGVY LR+ +E   +         V   DV+   + H     F+  DI + RR + KL  D ++
Sbjct:  137 SHFFTKLREGDSRGKLKPDSEKAQRAHARVERWTRGVDVFAKKFLLVPVVEDLHWSLAIVCHPGELAKRAVARERRELDVGATEDEXXXXDCPARPCVIHMDSL--RMHSAKKIEKWLRCFLEMEWRKRHSDEEPFTLRERTARAGGPPADLL-LAMPKVPQQTNSCDCGVYTLRYGQEFLARAVCRGARLAVDGRDVSLCFRDHDFEAWFTGRDIAEMRRDIKKLAADLEL 365          
BLAST of mRNA_Ecto-sp13_S_contig12683.2220.1 vs. uniprot
Match: A0A8J2SX84_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SX84_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.570e-21
Identity = 76/233 (32.62%), Postives = 116/233 (49.79%), Query Frame = 1
Query:  367 SSSFFTKLVERDI--------DEFDATYSGVKRWSRHVDLFSMKFVMVPVVEDAHWSLVCLCNLDKL-------EVGKGSVGYRSDD-------ARPCMLFLDSLGSKGHDSVDIHEYLLRYLQAKWKDTGRDELVFD------------QDVLPLVCPQAPTQTNAYDCGVYVLRFAKEMCQKWP------VVTAADVNDGMQAHFNPELFSPSDITDERRLLGKLLQDCKI 945
            +S FFTKL E D         ++    ++ V+RW+R VD+F+ KF++VPVVED HWSL  +C+  +L       E  +  VG   D+       ARPC++ +DSL  + H +  I ++L  +L+ +W+    DE  F              D+L L  P+ P QTN+ DCGVY LR+ +E   +         V   DV+   + H     F+  DI + RR + KL  D ++
Sbjct:  295 ASHFFTKLREGDSRGKLKPDSEKAQRAHARVERWTRGVDVFAKKFLLVPVVEDLHWSLAIVCHPGELAKRAVARERRELDVGATEDEXXXXDCPARPCVIHMDSL--RMHSAKKIEKWLRCFLEMEWRKRHSDEEPFTLRERTARAGGPPADLL-LAMPKVPQQTNSCDCGVYTLRYGQEFLARAVCRGARLAVDGRDVSLCFRDHDFEAWFTGRDIAEMRRDIKKLAADLEL 524          
BLAST of mRNA_Ecto-sp13_S_contig12683.2220.1 vs. uniprot
Match: A0A7S3JWX9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWX9_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.560e-21
Identity = 75/240 (31.25%), Postives = 126/240 (52.50%), Query Frame = 1
Query:  355 VHMCSSSFFTKLVERDIDE--FDATYSGVKRWSRHVDLFSMKFVMVPVVEDAHWSLVCLCNLDKL----EVGKGSV---GYRSDDA---------------RPCMLFLDSLGSKGHDSVDIHEYLLRYLQAKW-KDTGRD-ELVFDQDVLPLVCP-QAPTQTNAYDCGVYVLRFAKEMCQKWPVVTAADVNDGMQ------------AHFN-PELFSPSDITDERRLLGKLLQDCKIRYE 954
            VH+ SS FFTKL E  I    F   +  V+RW+R +D+F +KF+MVPVV+  HWSL  +C+ D++    E     V   G  +DDA               +PC++F+DSL  K H   ++ + +  +L  ++ K  G+D + +F+   +PL+   + P Q N +DCG++VLR+A+E+      +++  + DG Q            AHF+    F  +DIT  R+ +  L++  +  ++
Sbjct:  150 VHVFSSHFFTKLTEIKITTRTFQEAHKRVERWTRRLDIFKLKFIMVPVVQQLHWSLAVICHPDRIVDMCETHINHVKKKGTTADDAVDIDVDDEDEEIDPEQPCVVFMDSL--KMHKENEVFKAIKAWLCEEYRKKKGKDIQCLFETKKIPLIADLKLPRQKNGWDCGLFVLRYAREL------LSSLFLGDGPQLRISAKAHSERFAHFDFASWFRQADITRMRKEVKVLIKSLREEHD 381          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12683.2220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWD8_ECTSI1.980e-11761.66SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax... [more]
D8LDN6_ECTSI6.070e-8462.33ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KTD8_9PHAE1.100e-8161.26ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
A0A6H5JQ96_9PHAE1.200e-3975.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTK7_ECTSI2.650e-3554.17ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
F0YQ64_AURAN1.650e-2535.71ULP_PROTEASE domain-containing protein n=2 Tax=Aur... [more]
A0A7S3ZZX5_9STRA6.780e-2433.33Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4A0P2_9STRA6.550e-2232.76Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2SX84_9STRA1.570e-2132.62Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3JWX9_9STRA2.560e-2131.25Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12683contigEcto-sp13_S_contig12683:1516..4967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score356.3
Seed ortholog evalue1.7e-95
Seed eggNOG ortholog2880.D7FWD8
Model size1086
KEGG koko:K08596
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000278,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006276,GO:0006323,GO:0006464,GO:0006508,GO:0006807,GO:0006996,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009987,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0016787,GO:0016926,GO:0016929,GO:0018193,GO:0018205,GO:0019538,GO:0019783,GO:0022402,GO:0030071,GO:0030261,GO:0031577,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051276,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0065007,GO:0070011,GO:0070122,GO:0070138,GO:0070140,GO:0070646,GO:0070647,GO:0071103,GO:0071173,GO:0071174,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903047,GO:1905818,GO:1905819,GO:2000816,GO:2001251
Exons6
EggNOG free text desc.protein modification by small protein removal
EggNOG OGsCOG5160@1,KOG0779@2759
Ec32 ortholog descriptionPeptidase C48, SUMO/Sentrin/Ubl1
Ec32 orthologEc-09_004060.1
EC3.4.22.68
Cds size1080
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12683.2220.1prot_Ecto-sp13_S_contig12683.2220.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12683 1522..4967 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462677.4130046-UTR-Ecto-sp13_S_contig12683:1515..15211681462677.4130046-UTR-Ecto-sp13_S_contig12683:1515..1521Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12683 1516..1521 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462677.4246752-CDS-Ecto-sp13_S_contig12683:1521..19321681462677.4246752-CDS-Ecto-sp13_S_contig12683:1521..1932Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12683 1522..1932 +
1681462677.4368603-CDS-Ecto-sp13_S_contig12683:2418..25471681462677.4368603-CDS-Ecto-sp13_S_contig12683:2418..2547Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12683 2419..2547 +
1681462677.4483793-CDS-Ecto-sp13_S_contig12683:3027..31431681462677.4483793-CDS-Ecto-sp13_S_contig12683:3027..3143Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12683 3028..3143 +
1681462677.457275-CDS-Ecto-sp13_S_contig12683:3343..34821681462677.457275-CDS-Ecto-sp13_S_contig12683:3343..3482Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12683 3344..3482 +
1681462677.465372-CDS-Ecto-sp13_S_contig12683:4113..42531681462677.465372-CDS-Ecto-sp13_S_contig12683:4113..4253Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12683 4114..4253 +
1681462677.4735367-CDS-Ecto-sp13_S_contig12683:4822..49671681462677.4735367-CDS-Ecto-sp13_S_contig12683:4822..4967Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12683 4823..4967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12683.2220.1

>prot_Ecto-sp13_S_contig12683.2220.1 ID=prot_Ecto-sp13_S_contig12683.2220.1|Name=mRNA_Ecto-sp13_S_contig12683.2220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=360bp
MTREAFRQRGAGGGGVGTGHDGEDSRDPGGGGASSGSSQDAGPSSVAERW
NVSGSIAAGADGNQGSDAGGLPAAATPASDAGDAAPAVVGSGGRTKANDG
CMDATKANGGCMDGTKVHMCSSSFFTKLVERDIDEFDATYSGVKRWSRHV
DLFSMKFVMVPVVEDAHWSLVCLCNLDKLEVGKGSVGYRSDDARPCMLFL
DSLGSKGHDSVDIHEYLLRYLQAKWKDTGRDELVFDQDVLPLVCPQAPTQ
TNAYDCGVYVLRFAKEMCQKWPVVTAADVNDGMQAHFNPELFSPSDITDE
RRLLGKLLQDCKIRYEYEQEQQSSKKRKARDNTHASSSSGSDVEVEEPPI
GLSSGELSDS
back to top

mRNA from alignment at Ecto-sp13_S_contig12683:1516..4967+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12683.2220.1 ID=mRNA_Ecto-sp13_S_contig12683.2220.1|Name=mRNA_Ecto-sp13_S_contig12683.2220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3452bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12683:1516..4967+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCACATGACCCGAGAGGCGTTTCGACAGCGGGGCGCGGGTGGCGGCGG TGTTGGTACCGGCCACGACGGCGAGGATAGTCGTGATCCTGGTGGTGGAG GCGCGAGCAGTGGCAGTAGCCAAGATGCTGGTCCTAGCAGCGTCGCCGAG CGTTGGAACGTTAGCGGTAGCATCGCCGCTGGTGCCGATGGCAACCAAGG AAGTGATGCTGGTGGTCTGCCTGCTGCTGCCACTCCTGCTAGCGATGCCG GCGACGCCGCCCCTGCTGTTGTTGGTAGTGGTGGTAGAACAAAGGCGAAT GATGGATGCATGGACGCCACGAAAGCGAATGGTGGATGTATGGATGGAAC CAAGGTGCACATGTGTTCGTCGTCCTTCTTCACCAAGCTCGTGGAGAGGG ACATCGACGAGTTCGATGTAAGTCAGTCTCTTTTGTGTGATGCATGAGTG CGTTGATGTTAGCGTCGATGGCAATAACCGCTGGCCTACAAATGTGTGTT TCTTTCAGTAGCATGGACCACACGATGAAGCCGGAAAAAAACGTTGGTGT TGCAGTTGAGTATTATGCGCAATCGCGCTTTTTGTGGTGTGTGTGTGCTT TTCTCCGTGTTGGCCATTAACCAGAACCCATTACGGCCCACCTACTCGAG GTTGTGTATCTCCTCGATCAGACACTGACGAGGACCCAAGGCACACATAG CTTGATTAATCTCTCCCATAATTTTTGGAAATAATATTTTTCACGAAAGG CAAGCACAGTTTCCTTGGCGACCCCCGTCTTCCCCCGCAAGGGGTTGTCG ATGATCAGACTACGACAATGCTCAAGTTTGACCAACAACTGCACCCCCAC TCTGACTCCCTCACGAAATTCCTAGTATAAGTAACCCCTCTGCCGCTTTG CAGGCAACGTACAGTGGTGTCAAGCGTTGGTCCCGGCACGTGGATCTCTT CTCGATGAAGTTCGTCATGGTGCCGGTGGTGGAGGACGCACACTGGAGCC TCGTGTGCCTATGCAACCTGGACAAGCTCGAGGTACGGTATCTACGGCGG TATCTAGACAATATGTCCAACGGGAGATCTCATGTTACAAGCCTGGCAGA CATGCGTGTCGGCAGACTACAGTACTAGACCCACAGAGATAGGCCGAAGG AACCGTGCAGACCGACTTTGTTTCTTTGTGTCTTTGGTAGATGTGCCGGC CAAATGAGGGTTCAGTCAGCCACTTTGTGCTACTTCTGCTCTTGTGTTTT TCAGCAGATGGCATTAAAATCAGGTACGGTATCCATGGGACAGCGTCGCT CCTGCCGTGCATCCTTCTCTTGGCAAAGTCCATTGTATAGTCTAGACCTG TGAGGGCACAACGTGTAAGTATTACTGTCTCTCGTTTGATACGACCAGCA TTTGGTCATGGCCTGCTTGTTTCCCATGACCAAGGTTAGCCACCCAACGC ACCGCTATTCCTTGACCCTTGGCGCTGGGGACTTCAAAAAATGACAATAC AAACGTGTTTAGGTGGGCAAGGGATCGGTGGGCTACCGGAGCGACGACGC CCGGCCGTGTATGTTATTTTTAGACTCGCTCGGTAGCAAGGGTCACGACT CCGTGGACATCCACGAATACCTGCTCAGGTGAGAGGTGGGGGGGGAGAGT CAGAGATCATGGCACCACCCAGTAAGGGCAAGCGCAGTTCGTTGTTGTTA ATTGTTGTTGATGTCGTCTTTGCTTATCTTTGTTCTTCTCTGATAACATG GCTTCATTCACACGAAGAACCGATCGATCAATCTCGTCTACGTAACTTGA CATGCGTGTGGACAATCTGATTCGTCAGGTACCTGCAGGCGAAGTGGAAG GATACCGGGCGAGACGAGCTTGTATTTGATCAGGACGTTCTTCCCCTCGT GTGCCCGCAAGCGCCCACGCAGACGAACGCCTACGACTGCGGAGTGTACG TTCTACGCTTCGCGAAGGTAGGCTCCAGCTTGTGCCCGTGCATGGTTTGC ACAATCGCCGCACAAAACTCAGGGGATACAGGGGCTGAGCCGCTCTATTG GTGCGATTAGTCGTGGGTGGATGCACGTACATGCGTTTGTTCGTTTTTTC GTCGCTTTGAGCCCTCTCTTGTTCTTGTTCGCAACTTGACACCGCGTGAA CCCACACAATTTACCGCTACCCGGGTTACTCTTTTGTTAGGTTCTGCATC GCAAGTTATTGTGTCGTTTCTTGCCTTGTTTTCGGTGGGATAAGATGCTA CTTTATTCCTCGAGTATTGCGTGCATTTCCTTAACCACGGCATCGCAAGC GCAAAGCGGGTGACCACTGACCAGGCGTCAGTTTGGTTTCTTCGTCATTG TATGTCTATATGTTTTTGTTTTCTTTCAGAGAAGTTCTTGGGGCAAGCAA GTTTTTCTTGACCTTCGTCTCGATAGGGACTTCGCGTCCCATGACTCTGT TCTGTTTAGGACTCTTGCATACCCCAACCGTTCGCCCTTAAAGACATCTT CTCATTGCGGTCTTCTACGATTACGCCTGACCCAGTTGATGTGTTCCGTG CTTTGTGATGGTTGATACTTGCGCACATGACACATGTTTCCCTTGCAGGA GATGTGCCAGAAGTGGCCGGTGGTGACGGCAGCAGACGTCAACGATGGGA TGCAGGCGCACTTCAACCCCGAGCTCTTCAGCCCCTCAGACATAACGGAT GAGCGCCGTCTGCTCGGGAAGCTGCTGCAGGACTGCAAGTAAGCACCCCG ACTATTTAGTTCCAGTTCTTTAGCCTACTGAACCCTTGTCATACCCCCCC GGTAACCCCAGTTGGTCTCTCGTTGGTCACACGCACCAGTTCTTTTTCGC CGAGCCTGCCACCCTCCGGTTCGCGTGTTTTGGCGAGGATTGCTATTCTG CCGCGCTCCGATTCTCTTCGGTGATTGGTGTCGAAGCTTAAGGATTGAGA TGCCGCCCACTATCGCTACCTGATAGTGTGAGGCCATCTGGTGGCATTGC GGAAAGTGGTTGTTTCGCTCGACACGTGGAATCAATCAAAGGATGGTGCG AAACATCATACAGCGGGGTAGCCGACGCAAGACGAGACTTGCGTGTCTTT TAAGGGGTGTTGAAGTCCTTGAGTCTAGGTCCGGTGGCGCCTTCCGACAC TACACGGGGAGAAAAATCATCTGACGAGTTGGTTGGAACGGTTTTGCGCT TGTGCTAGGACCACTAGGGTAGAGTGGTTTCTGCTTTGTGCCCCTGCCTG AACTCCCCGGTGGTGTTTCGGTTTTCCCGTGGCCTTCGTCCAACCGAAAT GATGCAGGATACGCTACGAATATGAGCAGGAGCAGCAAAGCTCCAAGAAG AGGAAGGCCAGGGACAACACCCACGCCAGCTCCAGCAGCGGTTCGGACGT GGAGGTAGAGGAGCCCCCGATAGGTTTGTCGTCCGGTGAGCTGTCCGACT CC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12683:1516..4967+

>mRNA_Ecto-sp13_S_contig12683.2220.1 ID=mRNA_Ecto-sp13_S_contig12683.2220.1|Name=mRNA_Ecto-sp13_S_contig12683.2220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1080bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12683:1516..4967+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCCGAGAGGCGTTTCGACAGCGGGGCGCGGGTGGCGGCGGTGTTGG
TACCGGCCACGACGGCGAGGATAGTCGTGATCCTGGTGGTGGAGGCGCGA
GCAGTGGCAGTAGCCAAGATGCTGGTCCTAGCAGCGTCGCCGAGCGTTGG
AACGTTAGCGGTAGCATCGCCGCTGGTGCCGATGGCAACCAAGGAAGTGA
TGCTGGTGGTCTGCCTGCTGCTGCCACTCCTGCTAGCGATGCCGGCGACG
CCGCCCCTGCTGTTGTTGGTAGTGGTGGTAGAACAAAGGCGAATGATGGA
TGCATGGACGCCACGAAAGCGAATGGTGGATGTATGGATGGAACCAAGGT
GCACATGTGTTCGTCGTCCTTCTTCACCAAGCTCGTGGAGAGGGACATCG
ACGAGTTCGATGCAACGTACAGTGGTGTCAAGCGTTGGTCCCGGCACGTG
GATCTCTTCTCGATGAAGTTCGTCATGGTGCCGGTGGTGGAGGACGCACA
CTGGAGCCTCGTGTGCCTATGCAACCTGGACAAGCTCGAGGTGGGCAAGG
GATCGGTGGGCTACCGGAGCGACGACGCCCGGCCGTGTATGTTATTTTTA
GACTCGCTCGGTAGCAAGGGTCACGACTCCGTGGACATCCACGAATACCT
GCTCAGGTACCTGCAGGCGAAGTGGAAGGATACCGGGCGAGACGAGCTTG
TATTTGATCAGGACGTTCTTCCCCTCGTGTGCCCGCAAGCGCCCACGCAG
ACGAACGCCTACGACTGCGGAGTGTACGTTCTACGCTTCGCGAAGGAGAT
GTGCCAGAAGTGGCCGGTGGTGACGGCAGCAGACGTCAACGATGGGATGC
AGGCGCACTTCAACCCCGAGCTCTTCAGCCCCTCAGACATAACGGATGAG
CGCCGTCTGCTCGGGAAGCTGCTGCAGGACTGCAAGATACGCTACGAATA
TGAGCAGGAGCAGCAAAGCTCCAAGAAGAGGAAGGCCAGGGACAACACCC
ACGCCAGCTCCAGCAGCGGTTCGGACGTGGAGGTAGAGGAGCCCCCGATA
GGTTTGTCGTCCGGTGAGCTGTCCGACTCC
back to top