mRNA_Ecto-sp13_S_contig12682.2219.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12682.2219.1
Unique NamemRNA_Ecto-sp13_S_contig12682.2219.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12682.2219.1 vs. uniprot
Match: A0A1Y2CB00_9FUNG (L domain-like protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CB00_9FUNG)

HSP 1 Score: 61.6 bits (148), Expect = 6.660e-10
Identity = 25/42 (59.52%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 PHIIQGWHHTPYAHKDTERYSYIGKDNAQNEPEWVDWGGKAA 126
            P II GW H+ YAH+DTERY+YIGKD+   EP+W+D+G K++
Sbjct:  235 PTIISGWEHSTYAHRDTERYAYIGKDDG--EPQWIDYGSKSS 274
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BLAST of mRNA_Ecto-sp13_S_contig12682.2219.1 vs. uniprot
Match: A0A0L0G851_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G851_9EUKA)

HSP 1 Score: 55.1 bits (131), Expect = 6.590e-9
Identity = 23/44 (52.27%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 PHIIQGWHHTPYAHKDTERYSYIGKDNAQNEPEWVDWGGKAANA 132
            P II GW H+ YAH+DTER +Y GK++   +PEW+D+G K+A +
Sbjct:   14 PQIISGWEHSRYAHRDTERNAYKGKNDG-GDPEWLDYGSKSARS 56
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12682.2219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1Y2CB00_9FUNG6.660e-1059.52L domain-like protein n=1 Tax=Rhizoclosmatium glob... [more]
A0A0L0G851_9EUKA6.590e-952.27Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12682contigEcto-sp13_S_contig12682:4260..4415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size156
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462677.3811343-CDS-Ecto-sp13_S_contig12682:4259..44151681462677.3811343-CDS-Ecto-sp13_S_contig12682:4259..4415Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12682 4260..4415 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12682.2219.1prot_Ecto-sp13_S_contig12682.2219.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12682 4260..4415 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12682.2219.1

>prot_Ecto-sp13_S_contig12682.2219.1 ID=prot_Ecto-sp13_S_contig12682.2219.1|Name=mRNA_Ecto-sp13_S_contig12682.2219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
PHIIQGWHHTPYAHKDTERYSYIGKDNAQNEPEWVDWGGKAANAAADAAK
K*
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mRNA from alignment at Ecto-sp13_S_contig12682:4260..4415-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12682.2219.1 ID=mRNA_Ecto-sp13_S_contig12682.2219.1|Name=mRNA_Ecto-sp13_S_contig12682.2219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12682:4260..4415- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGCACATCATCCAGGGCTGGCACCACACGCCCTACGCGCACAAGGACAC
GGAGCGGTACTCGTACATCGGCAAGGACAACGCCCAGAACGAGCCCGAGT
GGGTGGACTGGGGCGGCAAGGCGGCGAACGCCGCGGCCGACGCCGCGAAG
AAATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12682:4260..4415-

>mRNA_Ecto-sp13_S_contig12682.2219.1 ID=mRNA_Ecto-sp13_S_contig12682.2219.1|Name=mRNA_Ecto-sp13_S_contig12682.2219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12682:4260..4415- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGCACATCATCCAGGGCTGGCACCACACGCCCTACGCGCACAAGGACAC
GGAGCGGTACTCGTACATCGGCAAGGACAACGCCCAGAACGAGCCCGAGT
GGGTGGACTGGGGCGGCAAGGCGGCGAACGCCGCGGCCGACGCCGCGAAG
AAATGA
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