mRNA_Ecto-sp13_S_contig12682.2218.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12682.2218.1
Unique NamemRNA_Ecto-sp13_S_contig12682.2218.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12682.2218.1 vs. uniprot
Match: D7G1Y1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y1_ECTSI)

HSP 1 Score: 277 bits (708), Expect = 1.320e-93
Identity = 147/160 (91.88%), Postives = 150/160 (93.75%), Query Frame = 1 
Query:    1 MASPPQQQVQRMDRGSFVSSESFESLTCGAPAVVIERLRQATGADAGPDALKELGESIKKAAVERLGGGGDKGGVEVAFGGAMGRSFYATADGSTTTADVVLFYTLDPLDIDTKQSTCVRKARTGCELSADEVMQALYKLHCGGGDSXXXXXXXATTSTS 480
            MASPPQQQVQRMDRGSFVSSESFESLTCGAPAVVIERLRQATGADAGP+ALKELGESIKKAAVE+LGGGGDKGGVEVAFGGAMGRSFYATADGSTTTADVVLFYTLDPLDIDTKQSTCVRKART CELSADEVMQALYKL  GGGD+       ATTSTS
Sbjct:    1 MASPPQQQVQRMDRGSFVSSESFESLTCGAPAVVIERLRQATGADAGPNALKELGESIKKAAVEKLGGGGDKGGVEVAFGGAMGRSFYATADGSTTTADVVLFYTLDPLDIDTKQSTCVRKARTECELSADEVMQALYKLQPGGGDTSDSGSGGATTSTS 160
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12682.2218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1Y1_ECTSI1.320e-9391.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12682contigEcto-sp13_S_contig12682:1530..2276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size483
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_003710.1
Cds size483
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462677.3377478-CDS-Ecto-sp13_S_contig12682:1529..16941681462677.3377478-CDS-Ecto-sp13_S_contig12682:1529..1694Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12682 1530..1694 -
1681462677.3501296-CDS-Ecto-sp13_S_contig12682:1958..22761681462677.3501296-CDS-Ecto-sp13_S_contig12682:1958..2276Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12682 1959..2276 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12682.2218.1prot_Ecto-sp13_S_contig12682.2218.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12682 1530..2276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12682.2218.1

>prot_Ecto-sp13_S_contig12682.2218.1 ID=prot_Ecto-sp13_S_contig12682.2218.1|Name=mRNA_Ecto-sp13_S_contig12682.2218.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=161bp
MASPPQQQVQRMDRGSFVSSESFESLTCGAPAVVIERLRQATGADAGPDA
LKELGESIKKAAVERLGGGGDKGGVEVAFGGAMGRSFYATADGSTTTADV
VLFYTLDPLDIDTKQSTCVRKARTGCELSADEVMQALYKLHCGGGDSSSS
GSGGATTSTS*
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mRNA from alignment at Ecto-sp13_S_contig12682:1530..2276-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12682.2218.1 ID=mRNA_Ecto-sp13_S_contig12682.2218.1|Name=mRNA_Ecto-sp13_S_contig12682.2218.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=747bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12682:1530..2276- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTTCGCCCCCGCAGCAACAGGTGCAGCGGATGGACCGTGGGAGCTT
CGTCTCTTCAGAGAGCTTCGAAAGTCTGACCTGCGGCGCCCCCGCTGTCG
TTATCGAGCGACTCCGCCAAGCCACCGGTGCTGACGCCGGCCCAGACGCG
CTAAAAGAGCTCGGTGAGAGCATCAAGAAGGCGGCCGTGGAAAGGTTGGG
AGGGGGCGGGGACAAGGGGGGGGTGGAGGTGGCATTTGGGGGGGCGATGG
GCCGGTCATTCTACGCCACGGCTGATGGATCGACAACAACCGCGGACGTT
GTCCTGTTCTACACACTGGTGGGTTCAGGTAATTGTAGCGAGGCTTATTG
CGCACCCACCCCGATGCAGACATCATCTATATATACCCCCGATCTCCCCA
AAGGGCATTGAGTTTGAATATACAGCAAAATAGTGTAAGCTTTCTGCAGG
GGCATATCTACAACCACTCGAGTACATACAAAAAATATTTGCGGGCGCAA
CGCCTCGAAATGCGTCGATAACGACAACTCTGAAAGAACCACATCACAAC
GGTTCCTCCGTCGAATCGTTTCTTTCTTTTAGGACCCATTGGACATCGAC
ACAAAACAGAGCACATGCGTTCGGAAGGCCAGAACAGGGTGCGAACTCTC
GGCTGACGAGGTTATGCAGGCACTCTACAAGCTTCATTGCGGCGGCGGTG
ACAGCAGCAGCAGCGGCAGCGGCGGTGCCACCACGTCGACTTCTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12682:1530..2276-

>mRNA_Ecto-sp13_S_contig12682.2218.1 ID=mRNA_Ecto-sp13_S_contig12682.2218.1|Name=mRNA_Ecto-sp13_S_contig12682.2218.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12682:1530..2276- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTTCGCCCCCGCAGCAACAGGTGCAGCGGATGGACCGTGGGAGCTT
CGTCTCTTCAGAGAGCTTCGAAAGTCTGACCTGCGGCGCCCCCGCTGTCG
TTATCGAGCGACTCCGCCAAGCCACCGGTGCTGACGCCGGCCCAGACGCG
CTAAAAGAGCTCGGTGAGAGCATCAAGAAGGCGGCCGTGGAAAGGTTGGG
AGGGGGCGGGGACAAGGGGGGGGTGGAGGTGGCATTTGGGGGGGCGATGG
GCCGGTCATTCTACGCCACGGCTGATGGATCGACAACAACCGCGGACGTT
GTCCTGTTCTACACACTGGACCCATTGGACATCGACACAAAACAGAGCAC
ATGCGTTCGGAAGGCCAGAACAGGGTGCGAACTCTCGGCTGACGAGGTTA
TGCAGGCACTCTACAAGCTTCATTGCGGCGGCGGTGACAGCAGCAGCAGC
GGCAGCGGCGGTGCCACCACGTCGACTTCTTAA
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