mRNA_Ecto-sp13_S_contig12679.2216.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12679.2216.1
Unique NamemRNA_Ecto-sp13_S_contig12679.2216.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12679.2216.1 vs. uniprot
Match: A0A6H5JNJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ9_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 3.630e-57
Identity = 106/116 (91.38%), Postives = 107/116 (92.24%), Query Frame = 2 
Query:   29 QAGKGEGVGGGGAGLWEELRQGREAWLERGPCMGRARLSAVMSDERLTAALLWRTEAAELEKVFEYKPVLDKVKAAHGLAPVDTTAGRLFKRPRPAFLSAQAVAGRGAGAGAAADR 376
            QAGKGEG     AGLWEELRQGREAWLERGP MGRARLSAVMSDERLTAALLWRTEAA+LEKVFEYKPVLDKVKAAHGLAPVDTTAGRLFKRPRPAFLSAQAVAGRGAG   AADR
Sbjct: 2150 QAGKGEGXXXXXAGLWEELRQGREAWLERGPSMGRARLSAVMSDERLTAALLWRTEAADLEKVFEYKPVLDKVKAAHGLAPVDTTAGRLFKRPRPAFLSAQAVAGRGAGXXXAADR 2265
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BLAST of mRNA_Ecto-sp13_S_contig12679.2216.1 vs. uniprot
Match: D8LBI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI8_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 2.600e-26
Identity = 57/62 (91.94%), Postives = 57/62 (91.94%), Query Frame = 2 
Query:   29 QAGKGEGVGGGGAGLWEELRQGREAWLERGPCMGRARLSAVMSDERLTAALLWRTEAAELEK 214
            QAGKGEG     AGLWEELRQGREAWLERGPCMGRARLSAVMSDERLTAALLWRTEAAELEK
Sbjct: 2064 QAGKGEGXXXXXAGLWEELRQGREAWLERGPCMGRARLSAVMSDERLTAALLWRTEAAELEK 2125
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12679.2216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JNJ9_9PHAE3.630e-5791.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBI8_ECTSI2.600e-2691.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12679contigEcto-sp13_S_contig12679:2144..2823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size378
Hectar predicted targeting categoryother localisation
Exons2
Cds size378
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462677.0545285-CDS-Ecto-sp13_S_contig12679:2143..23071681462677.0545285-CDS-Ecto-sp13_S_contig12679:2143..2307Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12679 2144..2307 -
1681462677.0651522-CDS-Ecto-sp13_S_contig12679:2609..28231681462677.0651522-CDS-Ecto-sp13_S_contig12679:2609..2823Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12679 2610..2823 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12679.2216.1prot_Ecto-sp13_S_contig12679.2216.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12679 2144..2823 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12679.2216.1

>prot_Ecto-sp13_S_contig12679.2216.1 ID=prot_Ecto-sp13_S_contig12679.2216.1|Name=mRNA_Ecto-sp13_S_contig12679.2216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
MTIFSLPPCAGRERRGRRRRRRGSVGGAAAGKRGVAGAGSMHGSCAFVCR
DVGRAADGGAAVANGSRRAGEGVRVQAGVGQGQGRPRPRTGGHYRRPPVQ
ATPPGFPIGAGRRWPRRRSRSRRRPW
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mRNA from alignment at Ecto-sp13_S_contig12679:2144..2823-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12679.2216.1 ID=mRNA_Ecto-sp13_S_contig12679.2216.1|Name=mRNA_Ecto-sp13_S_contig12679.2216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=680bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12679:2144..2823- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGATTTTTTCCCTCCCGCCGTGCGCAGGCAGGGAAAGGAGAGGGCG
TCGGCGGCGGAGGCGCGGGTCTGTGGGAGGAGCTGCGGCAGGGAAGAGAG
GCGTGGCTGGAGCGGGGTCCATGCATGGGTCGTGCGCGTTTGTCTGCCGT
GATGTCGGACGAGCGGCTGACGGCGGCGCTGCTGTGGCGAACGGAAGCCG
CCGAGCTGGAGAAGGTGGGATGTGTACATTCCTGATGCCTGCGTCTGCAT
CGGCAGCAGCGTGTTTTGTTTGTTCCTGGTTGACAATTAATCGTTACTGA
AAATAAGATGTTTGAACTGGAGTCTGCATGTGCTCTGTCTGGCTTGTGTG
TTAACGCTCTCGAAGAGAACTATATTTACTGTTCCTGATTCACGCGCACC
AGCACAACCACCGCCACCGCTTACACGCCCCCCCCCTACCCCCGTGCTGC
CGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGGTCCC
TTGCCTCGTGACGCAGGTGTTCGAGTACAAGCCGGTGTTGGACAAGGTCA
AGGCCGCCCACGGCCTCGCACCGGTGGACACTACCGCCGGCCGCCTGTTC
AAGCGACCCCGCCCGGCTTTCCTATCGGCGCAGGCCGTCGCTGGCCGCGG
CGCCGGAGCCGGAGCCGCCGCCGACCGTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12679:2144..2823-

>mRNA_Ecto-sp13_S_contig12679.2216.1 ID=mRNA_Ecto-sp13_S_contig12679.2216.1|Name=mRNA_Ecto-sp13_S_contig12679.2216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12679:2144..2823- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGATTTTTTCCCTCCCGCCGTGCGCAGGCAGGGAAAGGAGAGGGCG
TCGGCGGCGGAGGCGCGGGTCTGTGGGAGGAGCTGCGGCAGGGAAGAGAG
GCGTGGCTGGAGCGGGGTCCATGCATGGGTCGTGCGCGTTTGTCTGCCGT
GATGTCGGACGAGCGGCTGACGGCGGCGCTGCTGTGGCGAACGGAAGCCG
CCGAGCTGGAGAAGGTGTTCGAGTACAAGCCGGTGTTGGACAAGGTCAAG
GCCGCCCACGGCCTCGCACCGGTGGACACTACCGCCGGCCGCCTGTTCAA
GCGACCCCGCCCGGCTTTCCTATCGGCGCAGGCCGTCGCTGGCCGCGGCG
CCGGAGCCGGAGCCGCCGCCGACCGTGG
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