mRNA_Ecto-sp13_S_contig12675.2214.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12675.2214.1
Unique NamemRNA_Ecto-sp13_S_contig12675.2214.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12675.2214.1 vs. uniprot
Match: A0A6H5JRC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC9_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.990e-15
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = -1 
Query:  405 DRVPSRAFITCSCGGREVFGVPAPVENKGESGTRPWCQLRLNASI 539
            D +P RAF+T SCGGR VFGVPAP+ENKGESGTRPW QLRLNAS 
Sbjct:  194 DVLPGRAFVTRSCGGRGVFGVPAPLENKGESGTRPWWQLRLNASF 238
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BLAST of mRNA_Ecto-sp13_S_contig12675.2214.1 vs. uniprot
Match: A0A6H5JIQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIQ0_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 3.030e-9
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = -2 
Query:  419 QIECQAGLLSPVRAEEERCLASPLPSRTRARVARDLGVNCA 541
            +I CQAGL SPVRAE+E C ASPLPSRTRA V RDLG NCA
Sbjct:  197 EICCQAGLSSPVRAEKEGCSASPLPSRTRATVTRDLGGNCA 237
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BLAST of mRNA_Ecto-sp13_S_contig12675.2214.1 vs. uniprot
Match: A0A6H5L0N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N7_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 3.240e-5
Identity = 30/45 (66.67%), Postives = 33/45 (73.33%), Query Frame = -3 
Query:  355 VWRPRSRREQGREWHETLVSTAPEREHHVLQRGSTGGWL-FFYGA 486
            V R RS REQGRE HETLV+TAPER+ H+LQRG  G     FYGA
Sbjct:  110 VRRTRSPREQGREGHETLVATAPERQPHILQRGKHGRLPNVFYGA 154
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12675.2214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JRC9_9PHAE2.990e-1580.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIQ0_9PHAE3.030e-978.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0N7_9PHAE3.240e-566.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12675contigEcto-sp13_S_contig12675:3510..4051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size542
Hectar predicted targeting categoryother localisation
Exons1
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462677.0200524-UTR-Ecto-sp13_S_contig12675:3509..37181681462677.0200524-UTR-Ecto-sp13_S_contig12675:3509..3718Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12675 3510..3718 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462677.028747-CDS-Ecto-sp13_S_contig12675:3718..40511681462677.028747-CDS-Ecto-sp13_S_contig12675:3718..4051Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12675 3719..4051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12675.2214.1prot_Ecto-sp13_S_contig12675.2214.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12675 3719..4051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12675.2214.1

>prot_Ecto-sp13_S_contig12675.2214.1 ID=prot_Ecto-sp13_S_contig12675.2214.1|Name=mRNA_Ecto-sp13_S_contig12675.2214.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
MQSPVHIHPLKNNEAGPNSCVKLNTKNINVFRARVHEISSTPHTQAGRKP
HKKIASRPCFPAAVHDARVQAQLTPRSRATLALVLDGSGDAKHLSSSART
GDKSPAWHSI*
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mRNA from alignment at Ecto-sp13_S_contig12675:3510..4051+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12675.2214.1 ID=mRNA_Ecto-sp13_S_contig12675.2214.1|Name=mRNA_Ecto-sp13_S_contig12675.2214.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=542bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12675:3510..4051+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAAAACCCCGATCCAGGCTCTAACTAATCTTTCAACAAGAGAAAAAATA
TCAGCCCCATGTGCTTCCCTCGATCCAGGCCTTAATGAATGTGGCAAGCC
TTACACAAAAATAAGAATTAAGAATGTGTCCAACCGCCCGTGTAGTACAC
CCTGTTCAAAAAGCTAGGCCCTATTGAATGTGGTCAGCCCTTAAAGTACC
ACAAAAAAAATGCAGTCACCCGTGCATATACACCCCCTGAAAAATAACGA
AGCAGGCCCTAATTCATGTGTGAAGCTGAATACTAAGAATATCAATGTGT
TTCGCGCCCGTGTACACGAAATCTCTTCAACCCCCCACACGCAGGCCGGC
CGTAAGCCCCATAAAAAAATAGCCAGCCGCCCGTGCTTCCCCGCTGCAGT
ACATGATGCTCGCGTTCAGGCGCAGTTGACACCAAGGTCTCGTGCCACTC
TCGCCCTTGTTCTCGACGGGAGCGGGGACGCCAAACACCTCTCTTCCTCC
GCACGAACAGGTGATAAAAGCCCGGCTTGGCACTCTATCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12675:3510..4051+

>mRNA_Ecto-sp13_S_contig12675.2214.1 ID=mRNA_Ecto-sp13_S_contig12675.2214.1|Name=mRNA_Ecto-sp13_S_contig12675.2214.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12675:3510..4051+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGTCACCCGTGCATATACACCCCCTGAAAAATAACGAAGCAGGCCC
TAATTCATGTGTGAAGCTGAATACTAAGAATATCAATGTGTTTCGCGCCC
GTGTACACGAAATCTCTTCAACCCCCCACACGCAGGCCGGCCGTAAGCCC
CATAAAAAAATAGCCAGCCGCCCGTGCTTCCCCGCTGCAGTACATGATGC
TCGCGTTCAGGCGCAGTTGACACCAAGGTCTCGTGCCACTCTCGCCCTTG
TTCTCGACGGGAGCGGGGACGCCAAACACCTCTCTTCCTCCGCACGAACA
GGTGATAAAAGCCCGGCTTGGCACTCTATCTGA
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