mRNA_Ecto-sp13_S_contig102.221.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig102.221.1
Unique NamemRNA_Ecto-sp13_S_contig102.221.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Match: A0A6H5LBR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBR8_9PHAE)

HSP 1 Score: 838 bits (2166), Expect = 1.310e-299
Identity = 489/604 (80.96%), Postives = 504/604 (83.44%), Query Frame = 1 
Query:  124 MGEPRTSLWSRLVVFYSVNKRDQLNAKVMAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLLDFGIEDEDLVRGKPFDPDLRSPPLSPTATMSTXXXXXXXXXXXXXXREPATRDSKELKRGEAAGSSQTGDELNFRSKSFDPLQALQHKTLRPPFPKEPALDNLAKFYRMLPKPHTRTGPAATAGGATXXXXXXXXXXXXGAADSRSGVDYFGSGRRGGGAGVVPPPDAAGSPHGSQQARETWPASVGGRSRHGPLVRSAADMERADKDMALRRRLTEGALAGDAEADPADSAEERFNPVKRIAQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHMNLLLVDVREKYTAFVPARGPRPPQKLPPPKPAEEEGPIDGDAAPASKVTGFEGLDGSGSGEGGYAXXXXXXXSRHARGPEGLGKVRG----AGAADGDNFVGVSPADGSEPTGATAWTVTGTGGFEGGRIRGEGGGNXGGGSERIDPRDPRMDVAPAAAASGVATKEVCSNERREGGAREATRTKLLPQEWGVTHEREENDPTRRTPDSEEQRPGPPLPPAGRQGGDINRGGGGGVGVSGEIPAA 1923
            MGEPRTSLWSRLVVFYSVNKRDQLN KVMAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLL+FG+EDEDL RGKP DPD RS PLSP  TMST              RE A R++KEL RGE AGSS TGDELNFRSK FDPLQAL HKTLRPPFP+EPALDNLAKFYRMLPKP T TGPAATAG   XXXXXXXXXXXX  ADSRSGV YFGSG RGGGAGVVPPP AAGSP GS QAR+TWPAS GGR RHG LVRSAADMERADKDMALRRRL EGALAGDAE DPADSA  RFNPVKRI QEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRG CTGLIRAFDRHMNLLLVDVRE YTAFVPARGPRPP KLPPPKPAEE+ PID DAA ASKVTGFEGL           XXXXXXX     GPEGLGKV      AGAAD D  VGVSPADGSEPTGATAWTVTGTGGF+GGRI GE GG+ GG SERI PRDPRMDVA AAAASG AT+E CS+E REGGAR ATR KLLPQEWGV  EREENDPT RTPD+EE+RP PPL  AGR GGD+NRGGGG  G +GEIPAA
Sbjct:    1 MGEPRTSLWSRLVVFYSVNKRDQLNPKVMAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLLEFGMEDEDLARGKPSDPDRRSSPLSPIGTMSTTVAGAGSAGTGVAGREAAARENKELGRGEGAGSSPTGDELNFRSKFFDPLQALLHKTLRPPFPREPALDNLAKFYRMLPKPPTSTGPAATAGXXXXXXXXXXXXXXXXXADSRSGVSYFGSGHRGGGAGVVPPPAAAGSPRGSHQARKTWPASGGGRGRHGLLVRSAADMERADKDMALRRRLAEGALAGDAETDPADSAG-RFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPKLPPPKPAEED-PIDRDAAAASKVTGFEGLGXXXXXXXXXXXXXXXXXXXXXXGPEGLGKVTAGAGXAGAADDDKSVGVSPADGSEPTGATAWTVTGTGGFKGGRISGEDGGDGGGSSERIYPRDPRMDVAAAAAASGAATEEACSDETREGGARTATRMKLLPQEWGVPREREENDPTGRTPDAEEKRPRPPLSTAGRHGGDVNRGGGGEGGATGEIPAA 602
[Close]
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Match: D7G0V3_ECTSI (Protein with LSm motif. Putative LSm11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V3_ECTSI)

HSP 1 Score: 826 bits (2133), Expect = 1.460e-294
Identity = 483/604 (79.97%), Postives = 503/604 (83.28%), Query Frame = 1 
Query:  124 MGEPRTSLWSRLVVFYSVNKRDQLNAKVMAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLLDFGIEDEDLVRGKPFDPDLRSPPLSPTATMSTXXXXXXXXXXXXXXREPATRDSKELKRGEAAGSSQTGDELNFRSKSFDPLQALQHKTLRPPFPKEPALDNLAKFYRMLPKPHTRTGPAATAGGATXXXXXXXXXXXXGAADSRSGVDYFGSGRRGGGAGVVPPPDAAGSPHGSQQARETWPASVGGRSRHGPLVRSAADMERADKDMALRRRLTEGALAGDAEADPADSAEERFNPVKRIAQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHMNLLLVDVREKYTAFVPARGPRPPQKLPPPKPAEEEGPIDGDAAPASKVTGFEGLDGSGSGEGGYAXXXXXXXSRHARGPEGLGKVRGAG----AADGDNFVGVSPADGSEPTGATAWTVTGTGGFEGGRIRGEGGGNXGGGSERIDPRDPRMDVAPAAAASGVATKEVCSNERREGGAREATRTKLLPQEWGVTHEREENDPTRRTPDSEEQRPGPPLPPAGRQGGDINRGGGGGVGVSGEIPAA 1923
            MGEPRTSLWSRLVVFYSVNKRDQLNAKVMAEIVAKYGSKEKELSARLLKKY RPLP SVASQDLRRVLL+FG+EDEDL RGKP DPD R+ PLSPT  MST      XXXXXX  REP  RD+++L RGE AGSS  GDELNFRSK FDPLQAL HKTLRPPFPKEPALDNLAKFYRMLPKPH  TGP ATAGG  XXXXXXXXXXXX AADSRSGVDYFG+G R GGAGV+PPP+AAGSP GS QARETWP S GGR R+ PLVRSAADMERADKDMA RRRL EGALAGDAEADPAD AEERFNPVKRI QEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRG CTGLIRAFDRHMNLLLVDVRE YTAFVPARGPRPP K P PKPAEEE PID DAA ASKVTGFEGL           XXXXXXX         LGKV G      AAD + FVG+SPADGSE   ATAW+VTGTGGF+GGRIRGE  G+ GG SERIDPRD RM VA  AAASG AT+E CS+E REGGAR ATRTKLLPQEWGVT EREE DPTRRTPD+EEQRP PPLPPAGRQGGD+NRG G G G +GEIPAA
Sbjct:    1 MGEPRTSLWSRLVVFYSVNKRDQLNAKVMAEIVAKYGSKEKELSARLLKKYSRPLPPSVASQDLRRVLLEFGMEDEDLARGKPSDPDRRASPLSPTGAMSTAAAGAGXXXXXXAGREPTARDNEKLGRGEGAGSSPKGDELNFRSKFFDPLQALLHKTLRPPFPKEPALDNLAKFYRMLPKPHASTGPTATAGGXXXXXXXXXXXXXXXAADSRSGVDYFGAGPRSGGAGVIPPPNAAGSPRGSHQARETWPTSGGGRVRYSPLVRSAADMERADKDMASRRRLAEGALAGDAEADPADFAEERFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPKQPSPKPAEEEDPIDRDAAAASKVTGFEGLGXXXXXXXXXXXXXXXXXXXXXXXXXXLGKVTGXXXXXXAADDEKFVGISPADGSEQRAATAWSVTGTGGFKGGRIRGEVAGDAGGRSERIDPRDRRMPVAAVAAASGAATEEACSDETREGGARTATRTKLLPQEWGVTPEREEKDPTRRTPDAEEQRPRPPLPPAGRQGGDVNRGEGRGGGATGEIPAA 604
[Close]
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Match: A0A836CP56_9STRA (Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP56_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.620e-18
Identity = 113/347 (32.56%), Postives = 153/347 (44.09%), Query Frame = 1 
Query:  208 MAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLLDFGIEDEDLVRGKPFDPDLRSPPLSPTATMSTXXXXXXXXXXXXXXREPATRDSKELKRGEAAGSSQ----TGDELNFRSKSFDPLQALQHKTLRPPFPKEPALDNLAKFYRMLPKPHTRTGPAATAGGATXXXXXXXXXXXXGAADSRSGVDYFGSGRRGGGAGVVPPPDAAGSPHGSQQARETWPASVGGRSRHGPLVRSAADMERADKDMALRRRLTEGALAGDAEADPADSAEERFNPVKRIAQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHMNLLLVDVREKYT 1236
            + +I AK+G ++++LSA+L KKY +PLPA+V    +R + L FG+ D +         D              XXXXXXXXXXXXX     T  S  L         Q      ++LNFRS+ F+ L ALQ   +  P P    LDN+ KF  +LP  H    P  T                                       V  PP A                S   + RH   +RSAA    A      R+  T+  +    +ADP          V ++A    G+GP S L R+  ENRR  VMIR VNS+RG+C GL++AFD+H N+++VDV E+YT
Sbjct:    3 LLQIEAKFGQRQEQLSAKLAKKYQQPLPAAVTDAAVRDICLRFGLNDPEEAGAA----DAXXXXXXXXXXXXXXXXXXXXXXXXXXPPHAVTASSASLGVPSQQADQQHRHVADEQLNFRSRHFNALFALQADGVVLPVPNAQPLDNITKFRPLLPADH----PDRT---------------------------------------VTRPPKAQ---------------SGTAQQRH---MRSAA--AEAQPTAHERQASTQQHMQ---QADP-------LALVMQVALGPQGTGPMSFLGRMWRENRRVCVMIRYVNSVRGVCAGLLKAFDKHFNMVIVDVTERYT 272
[Close]
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Match: A0A5D6YBS7_9STRA (Sm domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBS7_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.580e-10
Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:  991 AGDAEADPADSAEERFNPV----KRIAQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHMNLLLVDVREKY 1233
            AGDA A    +A +R + V    +R+A  Y   GP+++L R   E RR  V++RRVNSIRG C G ++AFD+HMNL+L+DV E+Y
Sbjct:  160 AGDAGASSKAAAAKRNDAVPTLFERLADTYM-DGPFTVLRRCFLERRRVVVVVRRVNSIRGTCAGYLKAFDKHMNLVLLDVDERY 243
[Close]
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Match: A0A662WXN3_9STRA (Sm domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WXN3_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.430e-8
Identity = 28/52 (53.85%), Postives = 40/52 (76.92%), Query Frame = 1 
Query: 1078 GPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHMNLLLVDVREKY 1233
            GP+ +L R   E  R  V++RRVNS+RG CTG ++AFD+HMNL+L+DV ++Y
Sbjct:   84 GPFMVLRRCFLERTRVLVVVRRVNSVRGTCTGFLKAFDKHMNLVLLDVSQEY 135
[Close]
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Match: A0A3F2RTL9_9STRA (Sm domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RTL9_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 5.630e-8
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:  991 AGDAEADPADSAEERFNPV--KRIAQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHMNLLLVDVREKY 1233
            A DA+    D       P   +++A  Y   GP+ +L R   E  R  V++RRVNS+RG C+G ++AFD+HMNL+L+DV ++Y
Sbjct:  155 AADAKTKVVDKKTRAATPTLFEQLADTYL-DGPFRVLRRCFLERMRVLVVVRRVNSVRGTCSGFLKAFDKHMNLVLMDVSQEY 236
[Close]
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Match: A0A2D4BUY2_PYTIN (Sm domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BUY2_PYTIN)

HSP 1 Score: 65.9 bits (159), Expect = 5.860e-8
Identity = 28/50 (56.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query: 1078 GPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHMNLLLVDVRE 1227
            GP+S+L R   E +R  V++RRVNS+RG+C G ++AFD+HMNL+L+DV E
Sbjct:  183 GPFSVLRRCFLERKRVRVVLRRVNSVRGVCVGFLKAFDKHMNLVLLDVTE 232
[Close]
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Match: A0A8K1FHD1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHD1_PYTOL)

HSP 1 Score: 65.9 bits (159), Expect = 6.260e-8
Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 1 
Query: 1078 GPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHMNLLLVDVREKYTAF 1242
            GP+++L R   E +R  V+IRRVNSIRG C+G ++AFD+HMNL+L+DV E    F
Sbjct:  183 GPFTVLRRCFLERKRVQVVIRRVNSIRGTCSGFLKAFDKHMNLVLLDVTEVVIPF 237
[Close]
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Match: W4FR27_9STRA (Sm domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FR27_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.560e-7
Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 1 
Query: 1042 PVKRIAQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHMNLLLVDVREKY 1233
            PV     +   +GP SLL+R      R  V++RR++SIRG CTG ++ FD+HMNL+L+DV +K+
Sbjct:  156 PVLHAIADLHSTGPLSLLHRCLVAKARVVVVLRRISSIRGTCTGYLKGFDKHMNLVLMDVMDKF 219
[Close]
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Match: A0A1V9YMI3_9STRA (Sm domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMI3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.050e-7
Identity = 28/73 (38.36%), Postives = 43/73 (58.90%), Query Frame = 1 
Query: 1042 PVKRIAQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHMNLLLVDVREKYTAFVPARGP 1260
            P+     +    GP ++L  + +   +  V+IRRVNSIRG CTG ++ FD+H N++L+DV E+Y   V    P
Sbjct:  155 PLLETIADLCADGPLNILRAILKARAKVCVVIRRVNSIRGTCTGYLKGFDKHFNIILLDVTERYVPLVSGEQP 227
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LBR8_9PHAE1.310e-29980.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0V3_ECTSI1.460e-29479.97Protein with LSm motif. Putative LSm11 n=1 Tax=Ect... [more]
A0A836CP56_9STRA1.620e-1832.56Sm domain-containing protein n=1 Tax=Tribonema min... [more]
A0A5D6YBS7_9STRA1.580e-1048.24Sm domain-containing protein n=1 Tax=Pythium brass... [more]
A0A662WXN3_9STRA3.430e-853.85Sm domain-containing protein n=1 Tax=Nothophytopht... [more]
A0A3F2RTL9_9STRA5.630e-840.96Sm domain-containing protein n=1 Tax=Phytophthora ... [more]
A0A2D4BUY2_PYTIN5.860e-856.00Sm domain-containing protein n=1 Tax=Pythium insid... [more]
A0A8K1FHD1_PYTOL6.260e-854.55Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W4FR27_9STRA1.560e-745.31Sm domain-containing protein n=2 Tax=Aphanomyces a... [more]
A0A1V9YMI3_9STRA3.050e-738.36Sm domain-containing protein n=1 Tax=Achlya hypogy... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig102contigEcto-sp13_S_contig102:13849..17868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score72.0
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog115417.EPrPW00000014628
Model size1933
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.Protein with LSm motif
EggNOG OGs1MCU7@121069,28JKK@1,2QRZV@2759
Ec32 ortholog descriptionProtein with LSm motif. Putative LSm11
Ec32 orthologEc-23_002180.1
Cds size1932
COG Functional cat.J
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462514.4072578-CDS-Ecto-sp13_S_contig102:13848..140521681462514.4072578-CDS-Ecto-sp13_S_contig102:13848..14052Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig102 13849..14052 +
1681462514.4211323-CDS-Ecto-sp13_S_contig102:14613..149881681462514.4211323-CDS-Ecto-sp13_S_contig102:14613..14988Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig102 14614..14988 +
1681462514.4333575-CDS-Ecto-sp13_S_contig102:15297..157451681462514.4333575-CDS-Ecto-sp13_S_contig102:15297..15745Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig102 15298..15745 +
1681462514.4423075-CDS-Ecto-sp13_S_contig102:16234..163581681462514.4423075-CDS-Ecto-sp13_S_contig102:16234..16358Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig102 16235..16358 +
1681462514.452757-CDS-Ecto-sp13_S_contig102:17087..178681681462514.452757-CDS-Ecto-sp13_S_contig102:17087..17868Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig102 17088..17868 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig102.221.1prot_Ecto-sp13_S_contig102.221.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig102 13849..17868 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig102.221.1

>prot_Ecto-sp13_S_contig102.221.1 ID=prot_Ecto-sp13_S_contig102.221.1|Name=mRNA_Ecto-sp13_S_contig102.221.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=644bp
ALQPCSLQPRHSGAHSSAVKPREERKGCSACATRRKGQPLKMGEPRTSLW
SRLVVFYSVNKRDQLNAKVMAEIVAKYGSKEKELSARLLKKYGRPLPASV
ASQDLRRVLLDFGIEDEDLVRGKPFDPDLRSPPLSPTATMSTAAAGAGSA
GTGVAGREPATRDSKELKRGEAAGSSQTGDELNFRSKSFDPLQALQHKTL
RPPFPKEPALDNLAKFYRMLPKPHTRTGPAATAGGATATEAGASAAVVGG
AADSRSGVDYFGSGRRGGGAGVVPPPDAAGSPHGSQQARETWPASVGGRS
RHGPLVRSAADMERADKDMALRRRLTEGALAGDAEADPADSAEERFNPVK
RIAQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHM
NLLLVDVREKYTAFVPARGPRPPQKLPPPKPAEEEGPIDGDAAPASKVTG
FEGLDGSGSGEGGYAGASGGAGSRHARGPEGLGKVRGAGAADGDNFVGVS
PADGSEPTGATAWTVTGTGGFEGGRIRGEGGGNGGGGSERIDPRDPRMDV
APAAAASGVATKEVCSNERREGGAREATRTKLLPQEWGVTHEREENDPTR
RTPDSEEQRPGPPLPPAGRQGGDINRGGGGGVGVSGEIPAAAGR
back to top

mRNA from alignment at Ecto-sp13_S_contig102:13849..17868+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig102.221.1 ID=mRNA_Ecto-sp13_S_contig102.221.1|Name=mRNA_Ecto-sp13_S_contig102.221.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4020bp|location=Sequence derived from alignment at Ecto-sp13_S_contig102:13849..17868+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCTGCAGCCCTGCAGCCTGCAGCCGCGGCACAGCGGCGCACACAGCAG
TGCAGTGAAACCGAGAGAAGAAAGAAAGGGGTGCAGCGCGTGTGCAACGC
GTCGGAAGGGGCAACCACTCAAGATGGGGGAGCCACGGACGTCGCTATGG
TCGCGACTGGTGGTGTTCTACTCCGTGAACAAGAGGGATCAGCTCAACGC
AAAGGTAAGCATGACAGACCACGCCTTTGCTGGGCCACAGACTGAGAGAA
ATGGACAGCTAAGATCGGGCGTTGACAACTTAGCCGCGTTTCAGGTACAT
TTTTATCTCGCGAGACGCGCCACGATCGAGGGAGAACATTGACGAAATAT
GACACGGTGGGACGGGAAAGAGCCGCACTTCGTGCCAGGTTGGCGAGGCT
CTAATTTTGTCACAAGCGAGGAGAGCCAGCGCCAACGCAGTGCGCAGTAG
TGGCAGCTAGATTCCTTTGGCCAATAGAGAACCACCTTCAGCACCGTCCG
TTTGTTGTTCAGGCGAGCCTATGAAAGACATCTCATGTATGATAGGCAGC
AGTCTGACGCTGGTACTGAACCCAGTACGACGGCGCTTGAGCAAGCAATT
TTTTTCAGTCACCCATGGTATGTGTTCACGTGGATGTGTTGCACCGTTTC
GCAACAGCTACATGTGCGAAAACAAGCACCTCCAAGCGACAGCCGTACCG
CTGGTCCCCCTTCTCTTTTGTCTTCTGTGCGATCAACAAAACACTGGATG
ACACAACGCATGCAGGTTATGGCCGAGATCGTGGCCAAGTACGGCTCGAA
GGAGAAGGAGCTGTCCGCCCGCCTGCTCAAGAAGTACGGCCGGCCGCTCC
CTGCGTCGGTCGCCTCGCAAGACCTGCGGCGAGTGTTGCTCGACTTCGGC
ATTGAAGACGAGGACCTTGTCAGAGGGAAACCTTTCGACCCTGACCTAAG
GTCGCCGCCACTATCGCCGACAGCAACGATGTCCACGGCGGCAGCTGGAG
CGGGTAGTGCAGGGACCGGGGTGGCGGGACGAGAGCCTGCCACTAGGGAT
AGCAAGGAGTTAAAGCGAGGGGAGGCGGCGGGGAGCTCGCAGACAGGGGA
CGAGCTGAACTTCCGGTCCAAGTCATTCGACCCGCTTCAGGTGGAGGTGG
ACGGCCGGGAGTGCGGTGTATAAATCCCGAAAGTATCGCTGAAGGATGGA
TCCGTTGTTTGTAGCATTAAACCTCTGAAACATGTGTGTACGGTACCTTG
ATTAGATCAAGAGTCACGTTTGCAGCAGGGCAATAAATTGAAGAAGTGCA
GGTTGGCCGAAAGGGAGCGAAGGCAACACCAGACTGCTGTCGCTATGTGT
GCCGCTGCTTGCTTGAGACCGCGCTAGATCAGTGTTTCTTATCACGCGCT
GCCTGGACATGCCGCGATTTTTCTGCACCGGTTCGCCGGATTTCTTTAGG
CCCTACAGCACAAGACGCTCCGCCCGCCGTTTCCGAAAGAACCCGCCCTC
GACAACCTCGCCAAGTTCTACCGCATGCTGCCAAAACCTCACACCAGAAC
CGGTCCGGCTGCCACCGCCGGAGGCGCTACGGCAACAGAAGCAGGCGCTT
CCGCTGCTGTCGTCGGAGGTGCAGCAGATTCCAGGAGCGGCGTTGATTAT
TTCGGTTCCGGTCGCCGAGGCGGGGGGGCCGGGGTAGTACCACCACCCGA
CGCAGCAGGCTCGCCCCATGGTTCTCAGCAGGCACGTGAGACGTGGCCCG
CTTCCGTCGGCGGGAGAAGTCGGCACGGTCCGCTGGTCAGGTCTGCGGCA
GATATGGAGAGGGCGGACAAGGACATGGCCTTGCGGCGCCGGCTGACCGA
GGGGGCTCTCGCCGGGGATGCGGAAGCCGACCCCGCCGACTCCGCCGGTA
CGAGGAGGCGATTGCGCGCATATTGGTGGTGGTTCTATCCGCCCGGCTGT
ACTGACTCGCTTGTTATGGGGGGCACAGGGTTGTACTTCAGAAATTCGCC
TCACGAAGTCAACGGGGGCGGGTTAGATGTAGTAATGTTTTTTTTTTATT
TCAGGGGACAAGACTTGAACCGTAAGGCGCCTGGTCCCACTTTGCTTCTC
TTCTTGATTTTATCTATTGCAACCTTGTAAGTGTTTCGACGAACTCATTG
CCTTCAACGCACGCGACGTCTGCGCCCGTGCTTGTGTTACACTAGCGCCG
GACGCACAGCCCGGAACTGTCGACTGTTCGTTTCGTGCGGTTTTTGTTGC
TCGACAACTGTTCGTTTCGCCTTCGGCTCACGACCAATGACTCTCGCGTC
CACCAATCATCGGTCTTGTTCGAAGGGTTTCGTGTTTTGTTCTCACCCTG
TCCACCTCCCCCACGCCCCTCCCCGTTTTGGTCCAGAGGAACGATTCAAC
CCGGTTAAGCGGATTGCTCAGGAGTACGCCGGATCCGGCCCGTACAGCCT
GCTGTACCGCCTACACGAGGAGAACAGACGAGCCAGCGTCATGATACGGA
GGGTGAACAGGTGCGGGGCCGTTCTTTTGCGTGTTGTTTGCCGTCCGTTT
GGCTACTGGCGGTGATGGATGGCCTCGAGACGACTCGTTGGCCGCAGCTT
ATGAGGTCAACTGTTGTATGGTGTAGTGCTTGGGGGGAATGATAATATCT
GTCCGGGATCCCCCCGTTCCACATGGATCCAAAAATCTGGTGCGTGAGAC
CCGGGCGGGCGAAGCATCTGTTAGGCTCGGTGGTGAGTGAGTGTTATGCG
AGCGATCCCTTAAAGAAGATTCGTTGGATTTTAAGAATGACAAGCTCGTC
GACATCGCGAGGCACGTGTGGCGCATTTACTCTACGAGATGACGAGGCAG
GTGTGGCTTCGTGTTTTCGAAGCCACGTGTGGCGTGTTTGCTCTCTGAAC
CCTGACCCTCGCCTGGCCGTTTGAAATTGGGCCACGGCGACGAATTGTGG
CGCTGCTTTCGGCTACTGTTCGTGTTCTGTTCATGTCAACCCCTTCGCAG
AAAATATCGCAAAACGGTGTTTTGCAATTCGGGGCTCTCGAGAACAAGTG
CCGCTGGCACACTCTCCCTGTCGGTCGCACATTGTTTTTTCGTGTCCCAT
GCTCCACTCGCGGCTGCTCAACACCGACAAGCCAACGAATACATTCCTGC
AGCAGCACGTCACCGCAACCGGCCATCTCCCCTCCCAGCCTTTCCGTTGC
CGTTCGGTGTTTTTTCCCGTTTACCGCTGTCCGTCTCAGCATCCGCGGCA
TCTGTACCGGGCTGATAAGAGCGTTCGACAGGCACATGAACCTGCTGCTG
GTCGACGTGCGGGAGAAGTACACTGCCTTCGTTCCCGCCCGCGGGCCGCG
GCCGCCCCAGAAGCTGCCGCCGCCGAAGCCTGCGGAGGAAGAGGGCCCGA
TCGATGGCGACGCAGCGCCAGCGTCCAAGGTCACCGGCTTCGAAGGCCTT
GACGGAAGTGGGTCGGGGGAAGGGGGTTACGCGGGAGCCAGTGGGGGGGC
GGGGTCGCGTCATGCACGGGGCCCCGAGGGCCTCGGCAAGGTAAGGGGAG
CTGGAGCGGCCGACGGCGATAATTTTGTCGGCGTTTCTCCAGCCGATGGC
TCCGAACCAACAGGTGCGACCGCCTGGACCGTGACAGGCACCGGTGGCTT
CGAAGGTGGAAGAATAAGAGGAGAGGGTGGTGGAAATGGCGGCGGGGGTA
GCGAAAGAATCGATCCTAGAGATCCAAGAATGGATGTAGCGCCAGCCGCG
GCGGCATCCGGAGTGGCGACGAAGGAGGTCTGTTCAAACGAGAGGAGGGA
GGGCGGGGCTCGAGAGGCGACGAGAACGAAATTACTGCCGCAGGAATGGG
GGGTCACCCACGAACGGGAGGAGAATGATCCTACTAGAAGAACACCAGAC
TCCGAAGAACAACGCCCCGGTCCTCCTCTTCCTCCTGCGGGGAGACAAGG
GGGTGACATCAACAGGGGGGGAGGCGGGGGGGTTGGGGTTAGCGGCGAAA
TACCCGCCGCGGCGGGGAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig102:13849..17868+

>mRNA_Ecto-sp13_S_contig102.221.1 ID=mRNA_Ecto-sp13_S_contig102.221.1|Name=mRNA_Ecto-sp13_S_contig102.221.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1932bp|location=Sequence derived from alignment at Ecto-sp13_S_contig102:13849..17868+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCTGCAGCCCTGCAGCCTGCAGCCGCGGCACAGCGGCGCACACAGCAG
TGCAGTGAAACCGAGAGAAGAAAGAAAGGGGTGCAGCGCGTGTGCAACGC
GTCGGAAGGGGCAACCACTCAAGATGGGGGAGCCACGGACGTCGCTATGG
TCGCGACTGGTGGTGTTCTACTCCGTGAACAAGAGGGATCAGCTCAACGC
AAAGGTTATGGCCGAGATCGTGGCCAAGTACGGCTCGAAGGAGAAGGAGC
TGTCCGCCCGCCTGCTCAAGAAGTACGGCCGGCCGCTCCCTGCGTCGGTC
GCCTCGCAAGACCTGCGGCGAGTGTTGCTCGACTTCGGCATTGAAGACGA
GGACCTTGTCAGAGGGAAACCTTTCGACCCTGACCTAAGGTCGCCGCCAC
TATCGCCGACAGCAACGATGTCCACGGCGGCAGCTGGAGCGGGTAGTGCA
GGGACCGGGGTGGCGGGACGAGAGCCTGCCACTAGGGATAGCAAGGAGTT
AAAGCGAGGGGAGGCGGCGGGGAGCTCGCAGACAGGGGACGAGCTGAACT
TCCGGTCCAAGTCATTCGACCCGCTTCAGGCCCTACAGCACAAGACGCTC
CGCCCGCCGTTTCCGAAAGAACCCGCCCTCGACAACCTCGCCAAGTTCTA
CCGCATGCTGCCAAAACCTCACACCAGAACCGGTCCGGCTGCCACCGCCG
GAGGCGCTACGGCAACAGAAGCAGGCGCTTCCGCTGCTGTCGTCGGAGGT
GCAGCAGATTCCAGGAGCGGCGTTGATTATTTCGGTTCCGGTCGCCGAGG
CGGGGGGGCCGGGGTAGTACCACCACCCGACGCAGCAGGCTCGCCCCATG
GTTCTCAGCAGGCACGTGAGACGTGGCCCGCTTCCGTCGGCGGGAGAAGT
CGGCACGGTCCGCTGGTCAGGTCTGCGGCAGATATGGAGAGGGCGGACAA
GGACATGGCCTTGCGGCGCCGGCTGACCGAGGGGGCTCTCGCCGGGGATG
CGGAAGCCGACCCCGCCGACTCCGCCGAGGAACGATTCAACCCGGTTAAG
CGGATTGCTCAGGAGTACGCCGGATCCGGCCCGTACAGCCTGCTGTACCG
CCTACACGAGGAGAACAGACGAGCCAGCGTCATGATACGGAGGGTGAACA
GCATCCGCGGCATCTGTACCGGGCTGATAAGAGCGTTCGACAGGCACATG
AACCTGCTGCTGGTCGACGTGCGGGAGAAGTACACTGCCTTCGTTCCCGC
CCGCGGGCCGCGGCCGCCCCAGAAGCTGCCGCCGCCGAAGCCTGCGGAGG
AAGAGGGCCCGATCGATGGCGACGCAGCGCCAGCGTCCAAGGTCACCGGC
TTCGAAGGCCTTGACGGAAGTGGGTCGGGGGAAGGGGGTTACGCGGGAGC
CAGTGGGGGGGCGGGGTCGCGTCATGCACGGGGCCCCGAGGGCCTCGGCA
AGGTAAGGGGAGCTGGAGCGGCCGACGGCGATAATTTTGTCGGCGTTTCT
CCAGCCGATGGCTCCGAACCAACAGGTGCGACCGCCTGGACCGTGACAGG
CACCGGTGGCTTCGAAGGTGGAAGAATAAGAGGAGAGGGTGGTGGAAATG
GCGGCGGGGGTAGCGAAAGAATCGATCCTAGAGATCCAAGAATGGATGTA
GCGCCAGCCGCGGCGGCATCCGGAGTGGCGACGAAGGAGGTCTGTTCAAA
CGAGAGGAGGGAGGGCGGGGCTCGAGAGGCGACGAGAACGAAATTACTGC
CGCAGGAATGGGGGGTCACCCACGAACGGGAGGAGAATGATCCTACTAGA
AGAACACCAGACTCCGAAGAACAACGCCCCGGTCCTCCTCTTCCTCCTGC
GGGGAGACAAGGGGGTGACATCAACAGGGGGGGAGGCGGGGGGGTTGGGG
TTAGCGGCGAAATACCCGCCGCGGCGGGGAGG
back to top