mRNA_Ecto-sp13_S_contig12669.2210.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12669.2210.1
Unique NamemRNA_Ecto-sp13_S_contig12669.2210.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12669.2210.1 vs. uniprot
Match: D8LIA6_ECTSI (4a-hydroxytetrahydrobiopterin dehydratase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIA6_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 4.250e-60
Identity = 94/102 (92.16%), Postives = 98/102 (96.08%), Query Frame = 1 
Query:    1 MFTDARERETAIATLSGWAEAEEGRDAISKSFSFSDFNEAFAFMTRAALVAEKMDHHPEWFNVYNRVDVTLSTHDLGGLSRKDIRLAKRLDEFARDAPEAPP 306
            +FTDARERETAIATLSGWAEA EGRDAISKSF FSDFN+AFAFMTRAALVAEKMDHHPEWFNVYNRVDVTLSTHDLGGLSRKDIRLA+RLD FA+DAPEA P
Sbjct:   44 VFTDARERETAIATLSGWAEAGEGRDAISKSFCFSDFNQAFAFMTRAALVAEKMDHHPEWFNVYNRVDVTLSTHDLGGLSRKDIRLAQRLDAFAKDAPEALP 145
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12669.2210.1 vs. uniprot
Match: A0A1G7T590_9HYPH (Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Limimonas halophila TaxID=1082479 RepID=A0A1G7T590_9HYPH)

HSP 1 Score: 129 bits (325), Expect = 4.180e-37
Identity = 60/88 (68.18%), Postives = 75/88 (85.23%), Query Frame = 1 
Query:   19 ERETAIATLSGWAEAEEGRDAISKSFSFSDFNEAFAFMTRAALVAEKMDHHPEWFNVYNRVDVTLSTHDLGGLSRKDIRLAKRLDEFA 282
            ER++A+A L GW  A EGRDAI KS++F  FN+AFAFMTR AL AEKMDHHPEWFNVYNRVD+TLS+HD+GG+S++D+ LAK+ + FA
Sbjct:    9 ERDSALAELDGWT-AVEGRDAIHKSYTFKTFNQAFAFMTRVALAAEKMDHHPEWFNVYNRVDITLSSHDVGGVSQRDVDLAKKAERFA 95
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12669.2210.1 vs. uniprot
Match: A0A858RB43_9PROT (Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Rhodospirillaceae bacterium B3 TaxID=2728875 RepID=A0A858RB43_9PROT)

HSP 1 Score: 129 bits (323), Expect = 7.940e-37
Identity = 62/91 (68.13%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:   10 DARERETAIATLSGWAEAEEGRDAISKSFSFSDFNEAFAFMTRAALVAEKMDHHPEWFNVYNRVDVTLSTHDLGGLSRKDIRLAKRLDEFA 282
            DA  R  A+A L GW E E GRDAI+KSF F+DFN AFAFM R AL+AEKMDHHPEWFNVYNRVDVT++THD GG++  DIR+A+ +DE A
Sbjct:    6 DAAARAQALAGLKGWGEVE-GRDAITKSFRFADFNAAFAFMARVALLAEKMDHHPEWFNVYNRVDVTMATHDAGGVTELDIRMARFMDEIA 95
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12669.2210.1 vs. uniprot
Match: A0A537TFV2_9PROT (Putative pterin-4-alpha-carbinolamine dehydratase n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537TFV2_9PROT)

HSP 1 Score: 128 bits (321), Expect = 1.700e-36
Identity = 57/88 (64.77%), Postives = 74/88 (84.09%), Query Frame = 1 
Query:   22 RETAIATLSGWAEAEEGRDAISKSFSFSDFNEAFAFMTRAALVAEKMDHHPEWFNVYNRVDVTLSTHDLGGLSRKDIRLAKRLDEFAR 285
            R++A+A L GW+E E GRDAISK F+F DFNEAF FM R AL+AEK+DHHPEWFNVYNRV+VTL+THD GG++ +D++LA+ +D  A+
Sbjct:   10 RKSALAKLDGWSEVE-GRDAISKKFAFKDFNEAFGFMARVALIAEKLDHHPEWFNVYNRVEVTLATHDAGGVTERDVKLAEAMDRLAK 96
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12669.2210.1 vs. uniprot
Match: A0A5A7NHA1_9PROT (Putative pterin-4-alpha-carbinolamine dehydratase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A5A7NHA1_9PROT)

HSP 1 Score: 127 bits (320), Expect = 2.140e-36
Identity = 61/87 (70.11%), Postives = 72/87 (82.76%), Query Frame = 1 
Query:   22 RETAIATLSGWAEAEEGRDAISKSFSFSDFNEAFAFMTRAALVAEKMDHHPEWFNVYNRVDVTLSTHDLGGLSRKDIRLAKRLDEFA 282
            RE A+A+LSGW + E GRDAI K F FSDFN AF FM+R AL+AEKMDHHPEWFNVYN+VDVTLSTHD  GLS +DI++AK +D +A
Sbjct:   10 REEALASLSGWEQVE-GRDAIRKIFQFSDFNAAFGFMSRVALLAEKMDHHPEWFNVYNKVDVTLSTHDADGLSERDIKMAKAMDAWA 95
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12669.2210.1 vs. uniprot
Match: UPI000DF33AB3 (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Oleisolibacter albus TaxID=2171757 RepID=UPI000DF33AB3)

HSP 1 Score: 127 bits (319), Expect = 3.980e-36
Identity = 63/95 (66.32%), Postives = 72/95 (75.79%), Query Frame = 1 
Query:   13 ARERETAIATLSGWAEAEEGRDAISKSFSFSDFNEAFAFMTRAALVAEKMDHHPEWFNVYNRVDVTLSTHDLGGLSRKDIRLAKRLDEFARDAPE 297
            A  RE A+ TL+GW   E GR+AI KSF F DFN AFAFM R AL+AEKMDHHPEWFNVYNRVDVTL+THD  GL+  DIR+A+ +D    DAPE
Sbjct:    7 ATAREDALKTLTGWRMVE-GREAIHKSFRFPDFNAAFAFMARVALLAEKMDHHPEWFNVYNRVDVTLATHDADGLTELDIRMARFMDRIGGDAPE 100
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12669.2210.1 vs. uniprot
Match: A0A061QH09_9PROT (Putative pterin-4-alpha-carbinolamine dehydratase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A061QH09_9PROT)

HSP 1 Score: 126 bits (317), Expect = 6.320e-36
Identity = 60/88 (68.18%), Postives = 74/88 (84.09%), Query Frame = 1 
Query:   19 ERETAIATLSGWAEAEEGRDAISKSFSFSDFNEAFAFMTRAALVAEKMDHHPEWFNVYNRVDVTLSTHDLGGLSRKDIRLAKRLDEFA 282
            ER  AIA L+GWA+ ++GR+AI KSF F DFN AF FM+R AL+AEKMDHHPEWFNVYNRV+VTLSTHD  G+S +DI +AK++DE+A
Sbjct:    9 ERSQAIADLAGWAD-KDGRNAIHKSFQFKDFNAAFGFMSRVALLAEKMDHHPEWFNVYNRVEVTLSTHDADGVSERDIAMAKKMDEWA 95
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12669.2210.1 vs. uniprot
Match: UPI000E5D719D (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Algihabitans albus TaxID=2164067 RepID=UPI000E5D719D)

HSP 1 Score: 126 bits (317), Expect = 6.710e-36
Identity = 60/88 (68.18%), Postives = 69/88 (78.41%), Query Frame = 1 
Query:   22 RETAIATLSGWAEAEEGRDAISKSFSFSDFNEAFAFMTRAALVAEKMDHHPEWFNVYNRVDVTLSTHDLGGLSRKDIRLAKRLDEFAR 285
            R  A+A L GW E E GRDAI+K+F F DFN AF +MTR AL AE  DHHPEWFNVYNRV+VTLSTHD GGL+ KD+ LA+R+D FAR
Sbjct:   10 RAGALADLEGWVEVE-GRDAIAKTFKFKDFNAAFGWMTRVALAAESADHHPEWFNVYNRVEVTLSTHDAGGLTEKDVSLARRMDRFAR 96
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12669.2210.1 vs. uniprot
Match: A0A5A7MW82_9PROT (Putative pterin-4-alpha-carbinolamine dehydratase n=2 Tax=Iodidimonas gelatinilytica TaxID=1236966 RepID=A0A5A7MW82_9PROT)

HSP 1 Score: 126 bits (316), Expect = 8.710e-36
Identity = 60/87 (68.97%), Postives = 71/87 (81.61%), Query Frame = 1 
Query:   22 RETAIATLSGWAEAEEGRDAISKSFSFSDFNEAFAFMTRAALVAEKMDHHPEWFNVYNRVDVTLSTHDLGGLSRKDIRLAKRLDEFA 282
            RE A+A+LSGW + E GRDAI K F F DFN AF FM+R AL+AEKMDHHPEWFNVYN+VDVTLSTHD  GLS +DI++AK +D +A
Sbjct:   10 RENALASLSGWEQVE-GRDAIRKIFQFRDFNAAFGFMSRVALLAEKMDHHPEWFNVYNKVDVTLSTHDADGLSERDIKMAKAMDAWA 95
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12669.2210.1 vs. uniprot
Match: A0A382VPT8_9ZZZZ (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382VPT8_9ZZZZ)

HSP 1 Score: 125 bits (315), Expect = 1.200e-35
Identity = 60/81 (74.07%), Postives = 69/81 (85.19%), Query Frame = 1 
Query:   34 IATLSGWAEAEEGRDAISKSFSFSDFNEAFAFMTRAALVAEKMDHHPEWFNVYNRVDVTLSTHDLGGLSRKDIRLAKRLDE 276
            + TL GW +AE GRDAI K F F+DFN+AFA+MTR A VAEKMDHHPEWFNVYN+VDVTLSTHD+GGLS  DIRLAK +D+
Sbjct:   14 LKTLDGWTKAE-GRDAIHKRFEFADFNDAFAWMTRVAKVAEKMDHHPEWFNVYNKVDVTLSTHDVGGLSELDIRLAKLMDQ 93
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12669.2210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIA6_ECTSI4.250e-6092.164a-hydroxytetrahydrobiopterin dehydratase n=2 Tax=... [more]
A0A1G7T590_9HYPH4.180e-3768.18Putative pterin-4-alpha-carbinolamine dehydratase ... [more]
A0A858RB43_9PROT7.940e-3768.13Putative pterin-4-alpha-carbinolamine dehydratase ... [more]
A0A537TFV2_9PROT1.700e-3664.77Putative pterin-4-alpha-carbinolamine dehydratase ... [more]
A0A5A7NHA1_9PROT2.140e-3670.11Putative pterin-4-alpha-carbinolamine dehydratase ... [more]
UPI000DF33AB33.980e-3666.324a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]
A0A061QH09_9PROT6.320e-3668.18Putative pterin-4-alpha-carbinolamine dehydratase ... [more]
UPI000E5D719D6.710e-3668.184a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]
A0A5A7MW82_9PROT8.710e-3668.97Putative pterin-4-alpha-carbinolamine dehydratase ... [more]
A0A382VPT8_9ZZZZ1.200e-3574.074a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12669contigEcto-sp13_S_contig12669:60..1496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score192.2
Seed ortholog evalue1.2e-46
Seed eggNOG ortholog2880.D8LIA6
Preferred namePCBD2
Model size309
KEGG rclassRC01208
KEGG koko:K01724
KEGG ReactionR04734
KEGG Pathwayko00790,map00790
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003712,GO:0003713,GO:0003824,GO:0004497,GO:0004505,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0006082,GO:0006355,GO:0006520,GO:0006558,GO:0006559,GO:0006725,GO:0006807,GO:0007049,GO:0008124,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009653,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016054,GO:0016491,GO:0016705,GO:0016714,GO:0016829,GO:0016835,GO:0016836,GO:0017144,GO:0019219,GO:0019222,GO:0019439,GO:0019752,GO:0019953,GO:0022402,GO:0022413,GO:0022414,GO:0022607,GO:0030154,GO:0030435,GO:0030437,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032502,GO:0032505,GO:0034293,GO:0042737,GO:0042763,GO:0042764,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043393,GO:0043436,GO:0043496,GO:0043933,GO:0043934,GO:0043935,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045893,GO:0045935,GO:0046395,GO:0048468,GO:0048518,GO:0048522,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051098,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051291,GO:0051321,GO:0051704,GO:0055114,GO:0060255,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0140110,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1902221,GO:1902222,GO:1902680,GO:1903046,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons3
EggNOG free text desc.4-alpha-hydroxytetrahydrobiopterin dehydratase activity
EggNOG OGsCOG2154@1,KOG4073@2759
EC4.2.1.96
Cds size309
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462676.6626453-CDS-Ecto-sp13_S_contig12669:59..1191681462676.6626453-CDS-Ecto-sp13_S_contig12669:59..119Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12669 60..119 +
1681462676.678618-CDS-Ecto-sp13_S_contig12669:1034..11331681462676.678618-CDS-Ecto-sp13_S_contig12669:1034..1133Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12669 1035..1133 +
1681462676.6877277-CDS-Ecto-sp13_S_contig12669:1346..14961681462676.6877277-CDS-Ecto-sp13_S_contig12669:1346..1496Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12669 1347..1496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12669.2210.1prot_Ecto-sp13_S_contig12669.2210.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12669 60..1496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12669.2210.1

>prot_Ecto-sp13_S_contig12669.2210.1 ID=prot_Ecto-sp13_S_contig12669.2210.1|Name=mRNA_Ecto-sp13_S_contig12669.2210.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
MFTDARERETAIATLSGWAEAEEGRDAISKSFSFSDFNEAFAFMTRAALV
AEKMDHHPEWFNVYNRVDVTLSTHDLGGLSRKDIRLAKRLDEFARDAPEA
PP*
back to top

mRNA from alignment at Ecto-sp13_S_contig12669:60..1496+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12669.2210.1 ID=mRNA_Ecto-sp13_S_contig12669.2210.1|Name=mRNA_Ecto-sp13_S_contig12669.2210.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1437bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12669:60..1496+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCACCGATGCCCGTGAGAGAGAGACCGCTATCGCTACCTTGAGCGG
ATGGGCCGAGGTGAGCATTCTGCCGATCATTCTTCATCAGACGTGTGCCT
GTGCATTTTGGGGTGTTTTTCACCTTTCTTGTTCTGTGTAATGGACACAC
ATTTCAGTTCAGCAAGGCAACGTTGTTCTTCGAGTCTGTTGCAGGTGTTG
TCCCTCCTCGTGTTCTCGCGCACCTACTGCAAGTTGTAGGGAGGTTCCGA
GGACAAGACATGTATACAGAGCCTTTCTGCCCAATATATCTTGTCCCTAA
CTATCCTAGTGGAGTGATAAGGCGGAAGTGATGTCACATCTTTGACCAAG
CCTCTTACCCAATTATAATACTGTACCCCAGATACCCGGGCAACTCCAGG
TAAAATACCCGGGCCTGCCCGAGACACACGAGGTGAACAACAAGAAATAA
TCGCGGTGATGAGCGCATTGGATTGTAGAGAAATCAGACAATGCGTGATT
GAGAGTAGCACGACAATGATGGCATCGGAGTAGCTGCCGCACGAGGAATA
CTACACATTGGTGTTGTGTCTTTCTCCTTTTAAAAGGAACATACACTCTG
GTGGGAAGACTGGACGCTGTGATCCACGCTTTTCCTCCGCCTCCACGGTT
GAGGTGAACTTGCGGAAGACCCTACCCCGACACCACCCTAGGATAGCAAT
GCTGCAGCCAGCGTTTGCAGCAAGGGTCCTTGTCCCAACCAGCGGGCCGT
ATCCAGCAGCCAATGGTCCTAGAGGCCCCTAATGCACACACGTACTTGAC
TGGTTCGTGTGAGACCCCGAAATTTTCCGACTCAAGAGTTGCGGGAAGTT
TACCTTCACAGGGTGGAACAGTCCCAACGCTGTGAATAACGCTCTTCGTA
CAGGGCACTATGCATGCAACGTCCCCACTCGCTTCGTACTTACTGAAACG
AGTTATCTGTGTTCCCAACGAACAGGCGGAAGAGGGTAGGGACGCGATCA
GCAAGTCCTTCAGCTTTTCCGACTTCAACGAGGCTTTCGCCTTCATGACA
AGAGCTGCGCTTGTCGCAGAAAAGGTTTGTGAACACGGATCTGTCCTCAC
ACTTTCCCCGGAAATCTTACTCCCTCGTCGAGTGCACGTGGCACGGCTGC
CATGCTGTTGTTACGGTTCGCCACTATCGTGATAGGGCTGGTAGTCGGGC
CTGCGTGTGCCGGGAAACGCTTCTGCGCAGACCCTAATAACCCTGTCACG
CCTCCTCGTGCGGGCGCCGTTGCATCCATCATCACAGATGGACCACCACC
CCGAATGGTTCAACGTGTACAACAGGGTGGACGTGACACTCTCAACGCAC
GACTTGGGAGGGCTCTCCCGGAAGGACATCAGGCTAGCAAAGAGATTAGA
TGAGTTCGCCAGAGATGCGCCGGAGGCACCGCCATGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12669:60..1496+

>mRNA_Ecto-sp13_S_contig12669.2210.1 ID=mRNA_Ecto-sp13_S_contig12669.2210.1|Name=mRNA_Ecto-sp13_S_contig12669.2210.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12669:60..1496+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCACCGATGCCCGTGAGAGAGAGACCGCTATCGCTACCTTGAGCGG
ATGGGCCGAGGCGGAAGAGGGTAGGGACGCGATCAGCAAGTCCTTCAGCT
TTTCCGACTTCAACGAGGCTTTCGCCTTCATGACAAGAGCTGCGCTTGTC
GCAGAAAAGATGGACCACCACCCCGAATGGTTCAACGTGTACAACAGGGT
GGACGTGACACTCTCAACGCACGACTTGGGAGGGCTCTCCCGGAAGGACA
TCAGGCTAGCAAAGAGATTAGATGAGTTCGCCAGAGATGCGCCGGAGGCA
CCGCCATGA
back to top