mRNA_Ecto-sp13_S_contig12668.2209.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12668.2209.1
Unique NamemRNA_Ecto-sp13_S_contig12668.2209.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12668.2209.1 vs. uniprot
Match: D8LKL9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL9_ECTSI)

HSP 1 Score: 712 bits (1838), Expect = 1.140e-242
Identity = 388/446 (87.00%), Postives = 402/446 (90.13%), Query Frame = 1 
Query:    1 SEYMRPTSFPVSFVDLIRLLRVKGRGDKRQAKILVLLLRVKNSMLRAPRAARPRQGMTGIRRIRYRVGRAASAIVGSTSPTPTLASTVVSATSKSWKKTATSAPAAAATGHEPSATSPEVGPASGKGDRVDGCVSPPEHLDPSRRDETSVGTAAASGAADDSPDKDKRHGSEEQKQVARAAEEELTPVQTAVMEVDKRLKGLLEAGGILRGTTSGRECLQGFPRGTPVWENHCDRVGGRDEGGGGGRRVDGASDVVGDEDAAGGAMGWARKFCEADDGRFPSAESGEGIALGKVLAKHVVRDGDVGLVGTSPPTLLVHGLCIRVRHGESNRVLRVKRRPPARGHGEDNAERHQHEWAAVARQGVQGCRLRIGTKKEVASALAATFAGLTKEPNLASSS-SIAATPRTLGTLDMTTDKGWRELFVPLELSASTAVAEAGPLRLRLLV 1335
            SEYMRPTSFPVSFVDLIRLLRVKGRGDKRQAKILVLLLRVKNSMLRA R ARPRQG+TG+R +RYRVG AASAIVGST  TPTLASTVVSATS+S KKTAT APAAAATGH+ S TSPEVGPASGKGDR DG VSPPEHLDPSRRDETSV TAAASGAADDSPDKDK HGSEEQKQVAR  EEELTPVQ AV+ VDKRLKGLLEAGGILRGTTSGRECLQGFPRGTPVWENHC RVGGRDEG           DVV DED AGGAMGWARKFCE+DDGRFPS ESGEGI+LGKVLAKHVVRDGDVGLVGTSPPTLLVHGLCIRVRH ESNRVLRVKR PPA GHGEDNAERH+ EWA+VARQGV+GCRLRIGTKKEVASALAATFAGLTK+PNLAS+S S AATPRTLGTLDMTTDKGWRELFVP EL  STAV EAGPL+L LLV
Sbjct:  871 SEYMRPTSFPVSFVDLIRLLRVKGRGDKRQAKILVLLLRVKNSMLRAARVARPRQGLTGMRCVRYRVGGAASAIVGSTRSTPTLASTVVSATSRSPKKTATCAPAAAATGHDSSVTSPEVGPASGKGDRADGGVSPPEHLDPSRRDETSVRTAAASGAADDSPDKDKHHGSEEQKQVARVTEEELTPVQAAVLAVDKRLKGLLEAGGILRGTTSGRECLQGFPRGTPVWENHCGRVGGRDEGXXXXXXXXXXXDVVDDEDVAGGAMGWARKFCESDDGRFPSDESGEGISLGKVLAKHVVRDGDVGLVGTSPPTLLVHGLCIRVRHAESNRVLRVKRHPPASGHGEDNAERHEDEWASVARQGVKGCRLRIGTKKEVASALAATFAGLTKQPNLASTSTSSAATPRTLGTLDMTTDKGWRELFVPPELLVSTAVTEAGPLQLTLLV 1316
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BLAST of mRNA_Ecto-sp13_S_contig12668.2209.1 vs. uniprot
Match: A0A6H5K9H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9H7_9PHAE)

HSP 1 Score: 703 bits (1814), Expect = 1.440e-239
Identity = 398/501 (79.44%), Postives = 410/501 (81.84%), Query Frame = 1 
Query:    1 SEYMRPTSFPVSFVDLIRLLRVKGRGDKRQAKILVLLLRVKNSMLRAPRAARPRQG--------------------------------------------------------MTGIRRIRYRVGRAASAIVGSTSPTPTLASTVVSATSKSWKKTATSAPAAAATGHEPSATSPEVGPASGKGDRVDGCVSPPEHLDPSRRDETSVGTAAASGAADDSPDKDKRHGSEEQKQVARAAEEELTPVQTAVMEVDKRLKGLLEAGGILRGTTSGRECLQGFPRGTPVWENHCDRVGGRDEGGGGGRRVDGASDVVGDEDAAGGAMGWARKFCEADDGRFPSAESGEGIALGKVLAKHVVRDGDVGLVGTSPPTLLVHGLCIRVRHGESNRVLRVKRRPPARGHGEDNAERHQHEWAAVARQGVQGCRLRIGTKKEVASALAATFAGLTKEPNLASSSSIAATPRTLGTLDMTTDKGWRELFVPLELSASTAVAEAGPLRLRLLV 1335
            SEYMRPTSFPVSFVDLIRLLRVKGRGDKRQAKILVLLLRVKNSMLR PR ARPRQG                                                        MT IRRIRYR+G  ASAIVGSTSPTPTLASTVVSATS+S KKTATS PAAAATGH  S TSPEVGPASGKGDRVDG VSPPEH +PSRRDETSV TAAASGAADDS  KDK HGSEE+KQVARAAEEELTPVQ AVM VDKRL+ LL AGGILRGTTSGRECLQGFPRGTPVWENHC RVGGRDEG GG RRVDGA+D+VGDEDAAGGAMGWARKF   DDGRFPS ESGEGIALGKVLAKHVVRDGDVGL+GTSPPTLLVHGLCIRVRHGESNRVLRVKRRPPA GHGEDNA+RHQ EWAAVARQGVQGCRLRIGTK+EVASALAATFAGLT EPNL S   IAATPRTLGTLDMTTDKGWRELFVPLELSASTAV+EAGPL+L LLV
Sbjct:  840 SEYMRPTSFPVSFVDLIRLLRVKGRGDKRQAKILVLLLRVKNSMLRVPRVARPRQGEESIPINPQPGRLEGGVIAKISPDVTSSSPCSTKPRQTTRPPTKTDQYQLILVAQGMTSIRRIRYRIGGTASAIVGSTSPTPTLASTVVSATSRSLKKTATSVPAAAATGHYSSVTSPEVGPASGKGDRVDGGVSPPEHSNPSRRDETSVRTAAASGAADDSLAKDKHHGSEERKQVARAAEEELTPVQAAVMAVDKRLQDLLIAGGILRGTTSGRECLQGFPRGTPVWENHCGRVGGRDEGSGG-RRVDGANDIVGDEDAAGGAMGWARKFFGVDDGRFPSDESGEGIALGKVLAKHVVRDGDVGLIGTSPPTLLVHGLCIRVRHGESNRVLRVKRRPPASGHGEDNAKRHQDEWAAVARQGVQGCRLRIGTKREVASALAATFAGLTTEPNLVS---IAATPRTLGTLDMTTDKGWRELFVPLELSASTAVSEAGPLQLTLLV 1336
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12668.2209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKL9_ECTSI1.140e-24287.00Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5K9H7_9PHAE1.440e-23979.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12668contigEcto-sp13_S_contig12668:1151..4631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score710.3
Seed ortholog evalue5.6e-202
Seed eggNOG ortholog2880.D8LKL9
Model size1335
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
Cds size1326
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12668.2209.1prot_Ecto-sp13_S_contig12668.2209.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12668 1160..4631 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462676.5915098-UTR-Ecto-sp13_S_contig12668:1150..11591681462676.5915098-UTR-Ecto-sp13_S_contig12668:1150..1159Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12668 1151..1159 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462676.601263-CDS-Ecto-sp13_S_contig12668:1159..13161681462676.601263-CDS-Ecto-sp13_S_contig12668:1159..1316Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12668 1160..1316 +
1681462676.6096902-CDS-Ecto-sp13_S_contig12668:1908..26741681462676.6096902-CDS-Ecto-sp13_S_contig12668:1908..2674Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12668 1909..2674 +
1681462676.6186132-CDS-Ecto-sp13_S_contig12668:2853..29801681462676.6186132-CDS-Ecto-sp13_S_contig12668:2853..2980Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12668 2854..2980 +
1681462676.6269019-CDS-Ecto-sp13_S_contig12668:3612..37401681462676.6269019-CDS-Ecto-sp13_S_contig12668:3612..3740Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12668 3613..3740 +
1681462676.6348727-CDS-Ecto-sp13_S_contig12668:4483..46311681462676.6348727-CDS-Ecto-sp13_S_contig12668:4483..4631Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12668 4484..4631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12668.2209.1

>prot_Ecto-sp13_S_contig12668.2209.1 ID=prot_Ecto-sp13_S_contig12668.2209.1|Name=mRNA_Ecto-sp13_S_contig12668.2209.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=442bp
MRPTSFPVSFVDLIRLLRVKGRGDKRQAKILVLLLRVKNSMLRAPRAARP
RQGMTGIRRIRYRVGRAASAIVGSTSPTPTLASTVVSATSKSWKKTATSA
PAAAATGHEPSATSPEVGPASGKGDRVDGCVSPPEHLDPSRRDETSVGTA
AASGAADDSPDKDKRHGSEEQKQVARAAEEELTPVQTAVMEVDKRLKGLL
EAGGILRGTTSGRECLQGFPRGTPVWENHCDRVGGRDEGGGGGRRVDGAS
DVVGDEDAAGGAMGWARKFCEADDGRFPSAESGEGIALGKVLAKHVVRDG
DVGLVGTSPPTLLVHGLCIRVRHGESNRVLRVKRRPPARGHGEDNAERHQ
HEWAAVARQGVQGCRLRIGTKKEVASALAATFAGLTKEPNLASSSSIAAT
PRTLGTLDMTTDKGWRELFVPLELSASTAVAEAGPLRLRLLV
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mRNA from alignment at Ecto-sp13_S_contig12668:1151..4631+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12668.2209.1 ID=mRNA_Ecto-sp13_S_contig12668.2209.1|Name=mRNA_Ecto-sp13_S_contig12668.2209.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3481bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12668:1151..4631+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGGAGTACATGCGGCCAACGAGCTTCCCCGTGTCGTTCGTCGACCTCAT
ACGCCTGCTGCGGGTTAAGGGGAGGGGCGACAAGAGGCAGGCGAAGATCC
TGGTGCTCTTGCTGCGGGTAAAGAACTCCATGTTACGCGCCCCTCGGGCG
GCAAGACCGCGACAAGGTGAGGAGCCGATACCGATAGACCCGCAACCGGG
ACGTCTCGAGGGAGGGGTAATCGCCAAGGTTATCTTCTCGTTGCGCCATT
CGCAGCGGGATTTTCTAGACTTACGCCCTGAGGATTTTGGGCTGCAATTT
TTCCGGCTTAGTTTTCTTGGGGAAGAGACCCTCAGGTTACCTATTCATCC
CTTCTGATGGTGCGCGACATGTGCAAAAGTGGAGGCCATCTTCTTCATTT
CTCTTGGTGTTTCCTTCTTAAACCGAATACATTGTTTTTCTTCCTCGATC
TCCTGAAACGAAGAACGAAAGTTTCTACAAAGTGCCACCGAAACTCTTCA
TGTTTCAAAGACCAACAGACAACAGTGTCCACCTATCGGGTTATGGGTTT
CGTTCGTACCGCAAACTTACGGCGTCAATGACACCATCCCACTCGGCATT
CGTCCACACCAGCGACAAGCTTTGTCACTTGAGCTTCATCTTGTCCACGC
AGATCTCTCCTGACGTCACCTCCTCGTCTCCGTTTTTCACCAAACCTCGC
TAAACGACACGACCGCTAACAATCACCGATCAATACCAACTAATCCTCGC
GGCCCAAGGAATGACCGGCATACGCCGCATACGATACCGGGTCGGCCGCG
CGGCAAGCGCGATCGTAGGGTCCACTAGTCCAACGCCGACTCTCGCGTCT
ACCGTGGTAAGCGCAACCTCTAAGTCTTGGAAGAAGACCGCAACTTCGGC
GCCAGCGGCGGCCGCCACTGGACACGAACCTTCCGCGACGTCACCGGAGG
TTGGACCCGCTTCGGGCAAGGGGGATAGAGTTGACGGGTGCGTCTCCCCG
CCTGAGCATTTGGATCCGAGTCGACGTGACGAAACATCTGTCGGGACCGC
TGCCGCCTCTGGTGCTGCGGACGACAGCCCAGACAAGGACAAACGTCACG
GTAGCGAGGAACAGAAGCAGGTCGCCCGAGCGGCGGAGGAGGAACTCACG
CCCGTACAAACGGCCGTCATGGAGGTTGACAAACGACTTAAAGGCTTGCT
GGAAGCAGGGGGGATTCTTCGCGGCACCACCAGCGGACGAGAGTGTCTAC
AAGGATTCCCCCGAGGGACGCCGGTATGGGAAAACCACTGCGACAGGGTG
GGGGGTCGAGATGAAGGCGGCGGTGGTGGACGTCGTGTTGACGGCGCCAG
CGATGTCGTCGGCGATGAAGATGCGGCGGGCGGCGCCATGGGGTGGGCGA
GGAAATTCTGCGAGGCCGACGATGGTCGTTTTCCCTCTGCCGAAAGCGGG
GAAGGCATTGCTCTGGGCAAGGTGTTGGCGAAGCACGTGGTACGTGACGG
GGACGTGGGACTGGTAGGGACCAGGTGAGGGCCGCTCTATGGCGAACAGG
AAGTCTGACATGCATGATTGCAGTCGTGACGAAGAATGAACGGCTTTAGC
CATTGTGAGAGATGTGCGTGGTCTGCAATAACGTATCCCGGTGTCTGAAG
CCTCCATCTTGCTGACGCTTTGGTCTTGATGCTTTGATGTACCAATCGAA
CAGCCCGCCGACACTGCTAGTGCATGGCTTATGCATCCGCGTGAGGCATG
GGGAGAGCAATCGCGTCCTGAGGGTCAAGCGGCGCCCACCGGCCAGGGGC
CACGGCGAGGACAACGCCGAACGACATCAGGTGATCCATCGCGTTGTATG
GGAGGCACATCCATCCGTTCAAATCACATCACGTTCCACGTTTTGTCGTG
TTCGTCACCGAGGTCCTTCACAATTCTCGCACAGATTGTGCAGATTCTGT
GGGAGTATCTGGCCACTGCTACGAAGCATGATAATTGATTCCTGTATGTC
CTCCTCTTCAACGATATGCCGCACAATCAGCTGAAAACCGTCTTCTGCCC
CCCGAGGAACAACGATAGTGACACGCATTCCTCCCGCTGACCACGTGCCG
AGCAATACCTAGCGCATACACATCCCATCCCGCCCTCCGTTCCTGTCAGG
ACGAAACATACATGTTCTCAAACACTGCTCTCTCCAGAATTCACTGAAAT
ACGACGATTCGGTGGGGTAGGGAAGAGTGTGGCTGCGTTTGGTCGGCCGG
ATGTGGGAAACTTGGGCGGGCTGGTCTCCCTTTTTGGACAATTACACATC
ACTCGGAGCTACGTTTAACTCTAACCCAAACACAATTGTCGTCGTGCGTT
CGTGGGAAACGGCTGTGAACATAAAGGTTGATGAAAATTGCTCCGTCGCT
ACAGGCTCAATTGTTCCCGTGCCTTACTGATGATACCGAACAAAAAATGC
CTGCGAGACTAGCACGAGTGGGCTGCGGTAGCTCGTCAAGGGGTGCAGGG
GTGTCGCTTGAGGATCGGCACCAAGAAAGAAGTGGCGTCCGCGCTGGCGG
CGACCTTTGCCGGTCTCACCAAGGAGCCGAATCTGGCCAGGTACGATACA
TACACACCAACTGCTCCTGTCGGTACTCATGTGCACGTTGAAGGTTTTGG
AACCTACGAGAGGGACATGTTGCAAAGGCAGACTAGGGGTTGTCACTCCC
TCGTCCCAAAACATTCTTCTGGCGTATGTGTTTTGGCTCTGGTGCTCCCC
AACAGCTGCAGACACGAGGCGAGGGCAACTCAGTGATCTGGAATGCGATC
TGCTAAGTCTGAGGTACAATGCCTGCCATGAAGCAAGTACACAGCAGCAC
GCATTTCCGATTCCGTGCAACCTCCTTTCGCTCCATGTTCTCTATTGTTG
GTGTGCTTGTCCCTTGTACCTAAACATATGATAGCCATGATACTACATCT
TCGGAAGGATAACTTTGTTCAAGCACGTTCCTGCCGCGTTAACGTTCCGG
CAACCTTCGACTCATATTGCTATGTTACAAGAAGGCCATCCGGAACCCAC
GACATGATATGCGTTTCCGGGGCTACTTCGATGTTGATCTGCCTCACTAT
TTGTCGATAAACAACGAAAGTGCTCCCACCGTTTCAGTGTACTTGCTATT
CGAATAACGTGTGGTATTGCGATGACTTTCCTCCGTGAGCCAGGACAAAA
AACACAACCCACGCACGAAGCCATTTGAAGCGCGTCGAAATTCGTAGACT
TGAACAACGAAAAGCAACTATTGTGTGTGTGTTTCGTCCGGGGAATGCTG
ACATAACCACACTTCAATATGAAATTGTGGCAGCAGCAGCAGCATCGCGG
CAACGCCGCGTACCCTTGGCACGCTGGACATGACCACGGACAAAGGATGG
CGAGAGCTTTTCGTCCCGCTGGAGCTCTCAGCTTCGACCGCGGTCGCGGA
GGCCGGGCCGCTGAGGCTAAGGCTCTTGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12668:1151..4631+

>mRNA_Ecto-sp13_S_contig12668.2209.1 ID=mRNA_Ecto-sp13_S_contig12668.2209.1|Name=mRNA_Ecto-sp13_S_contig12668.2209.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1326bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12668:1151..4631+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGCCAACGAGCTTCCCCGTGTCGTTCGTCGACCTCATACGCCTGCT
GCGGGTTAAGGGGAGGGGCGACAAGAGGCAGGCGAAGATCCTGGTGCTCT
TGCTGCGGGTAAAGAACTCCATGTTACGCGCCCCTCGGGCGGCAAGACCG
CGACAAGGAATGACCGGCATACGCCGCATACGATACCGGGTCGGCCGCGC
GGCAAGCGCGATCGTAGGGTCCACTAGTCCAACGCCGACTCTCGCGTCTA
CCGTGGTAAGCGCAACCTCTAAGTCTTGGAAGAAGACCGCAACTTCGGCG
CCAGCGGCGGCCGCCACTGGACACGAACCTTCCGCGACGTCACCGGAGGT
TGGACCCGCTTCGGGCAAGGGGGATAGAGTTGACGGGTGCGTCTCCCCGC
CTGAGCATTTGGATCCGAGTCGACGTGACGAAACATCTGTCGGGACCGCT
GCCGCCTCTGGTGCTGCGGACGACAGCCCAGACAAGGACAAACGTCACGG
TAGCGAGGAACAGAAGCAGGTCGCCCGAGCGGCGGAGGAGGAACTCACGC
CCGTACAAACGGCCGTCATGGAGGTTGACAAACGACTTAAAGGCTTGCTG
GAAGCAGGGGGGATTCTTCGCGGCACCACCAGCGGACGAGAGTGTCTACA
AGGATTCCCCCGAGGGACGCCGGTATGGGAAAACCACTGCGACAGGGTGG
GGGGTCGAGATGAAGGCGGCGGTGGTGGACGTCGTGTTGACGGCGCCAGC
GATGTCGTCGGCGATGAAGATGCGGCGGGCGGCGCCATGGGGTGGGCGAG
GAAATTCTGCGAGGCCGACGATGGTCGTTTTCCCTCTGCCGAAAGCGGGG
AAGGCATTGCTCTGGGCAAGGTGTTGGCGAAGCACGTGGTACGTGACGGG
GACGTGGGACTGGTAGGGACCAGCCCGCCGACACTGCTAGTGCATGGCTT
ATGCATCCGCGTGAGGCATGGGGAGAGCAATCGCGTCCTGAGGGTCAAGC
GGCGCCCACCGGCCAGGGGCCACGGCGAGGACAACGCCGAACGACATCAG
CACGAGTGGGCTGCGGTAGCTCGTCAAGGGGTGCAGGGGTGTCGCTTGAG
GATCGGCACCAAGAAAGAAGTGGCGTCCGCGCTGGCGGCGACCTTTGCCG
GTCTCACCAAGGAGCCGAATCTGGCCAGCAGCAGCAGCATCGCGGCAACG
CCGCGTACCCTTGGCACGCTGGACATGACCACGGACAAAGGATGGCGAGA
GCTTTTCGTCCCGCTGGAGCTCTCAGCTTCGACCGCGGTCGCGGAGGCCG
GGCCGCTGAGGCTAAGGCTCTTGGTG
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