mRNA_Ecto-sp13_S_contig12666.2207.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12666.2207.1
Unique NamemRNA_Ecto-sp13_S_contig12666.2207.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12666.2207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12666contigEcto-sp13_S_contig12666:3539..4635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size238
Hectar predicted targeting categoryother localisation
Exons2
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462676.4859982-CDS-Ecto-sp13_S_contig12666:3538..36491681462676.4859982-CDS-Ecto-sp13_S_contig12666:3538..3649Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12666 3539..3649 +
1681462676.5002427-CDS-Ecto-sp13_S_contig12666:4509..46321681462676.5002427-CDS-Ecto-sp13_S_contig12666:4509..4632Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12666 4510..4632 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462676.5082598-UTR-Ecto-sp13_S_contig12666:4632..46351681462676.5082598-UTR-Ecto-sp13_S_contig12666:4632..4635Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12666 4633..4635 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12666.2207.1prot_Ecto-sp13_S_contig12666.2207.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12666 3539..4632 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12666.2207.1

>prot_Ecto-sp13_S_contig12666.2207.1 ID=prot_Ecto-sp13_S_contig12666.2207.1|Name=mRNA_Ecto-sp13_S_contig12666.2207.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
TIQLTKQHHHPASSKSLAFTGDETVFAWEINPLAGVKLQHHGGDQRSLGA
VSYRRRGFLPRRSRSVGRVQVLPPDTK*
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mRNA from alignment at Ecto-sp13_S_contig12666:3539..4635+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12666.2207.1 ID=mRNA_Ecto-sp13_S_contig12666.2207.1|Name=mRNA_Ecto-sp13_S_contig12666.2207.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1097bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12666:3539..4635+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGATTCAGCTCACAAAACAACACCATCACCCGGCAAGCTCGAAATCTCT
GGCTTTCACTGGTGACGAGACTGTTTTCGCGTGGGAGATCAACCCCCTCG
CAGGGGTAAAGGCAAGTGAGTACCAGGGATGCCTGAGGTGTCCGTGTCTG
CCATGCACGTGTACATGTGAGAACGGCAGCATCGTTGTTGGCAGGCGGGA
TCGGATCTCGATGATCAGACGTGATCAAGGTGCAGATCTCAGAGGGTTTG
AGGCGTCGAGGTAGCAGCACATCTGCGGAGGCCATGTTCTCCTTTGTCCA
CGCGTCGTGTTGTAGCGCTGCATCAGGCGTGCGTGGTAAACGAATCGGGC
GAGAGCCGTAGCTGAGATGAAGGATCCACGGGCGGCGGCGGCACATCTAC
GGATGGAACCCGCTGCTTCACCACTCGGTTGGGCATTCAAGACAACATAA
CCCGCTCTTTCGTATCCTGCACGTACTCGGATGGCCTGGGGGGTGTCTCC
CTGATCCTCCAAATGGCACGGGCACGGCGATTTCAGCTGTTGTTCTAGGG
GACGGGTTGACACGGCCAAAAAGGAAGTGCTACAATATTTTCGCTTGGTT
TCTCGGGACATCTCTTTCTGCTGGCGTAGACTACACTACAAGTCTAGGCT
TGAGCCTGTCTTCCTAGGATACCCCTCGAGTTCATCCGAGCACCGCGATC
GTTGCTGCTGACTTATGTGGTTTGGTCATTCTAGCGGATGTCCGGAACGG
CGAACTAGACAGGCATATGGATGTCGCTGTGGGAGGCAGGATGTGCCATT
TGATGTGGGATCTACTTCTACATTGCTCGTGCGAACTCTAGAATACGTAG
CCTGTACTTGGATGTAGGCGAAAGTCTGTGCTCGACATACTTTCGCTTAG
TTTATCACTCATCGCAGGATTCCATTCTCGCGATCCCGTTGTTCCATTCT
GCACACACACGTCCTTTCCAGCTTCAACATCATGGTGGTGATCAGCGCAG
CCTTGGTGCTGTTAGCTATCGGCGGCGTGGTTTCCTGCCCCGTCGTAGCC
GCAGTGTTGGACGCGTGCAAGTGCTGCCTCCCGACACCAAATGACAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12666:3539..4635+

>mRNA_Ecto-sp13_S_contig12666.2207.1 ID=mRNA_Ecto-sp13_S_contig12666.2207.1|Name=mRNA_Ecto-sp13_S_contig12666.2207.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12666:3539..4635+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGATTCAGCTCACAAAACAACACCATCACCCGGCAAGCTCGAAATCTCT
GGCTTTCACTGGTGACGAGACTGTTTTCGCGTGGGAGATCAACCCCCTCG
CAGGGGTAAAGCTTCAACATCATGGTGGTGATCAGCGCAGCCTTGGTGCT
GTTAGCTATCGGCGGCGTGGTTTCCTGCCCCGTCGTAGCCGCAGTGTTGG
ACGCGTGCAAGTGCTGCCTCCCGACACCAAATGA
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