mRNA_Ecto-sp13_S_contig12660.2203.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12660.2203.1
Unique NamemRNA_Ecto-sp13_S_contig12660.2203.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12660.2203.1 vs. uniprot
Match: D7FRK1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRK1_ECTSI)

HSP 1 Score: 469 bits (1206), Expect = 4.870e-164
Identity = 230/250 (92.00%), Postives = 238/250 (95.20%), Query Frame = 1 
Query:    1 GGFSQRGEGLDPDEDVYGSNDINSSPSEGFGADNGGMVPMGKEPQLWEFARDVATSLVSDLAVIPLWQVKVSAVAHRGRLPELWPFIGYRKALMAIIIEEGTSSLFRGWGPVCAAGLLRYFRRSKLLYTDYYWKTTHRVTTRFIMRSDSYSRHVNDPEVLAQTYEGFATRILWASILHPFDLLATRMMTESRPEYATGASSVRHVLEQSGFAGLFLGVRSSILNVLLPFGETFISWVPFFVMTRRVLDGM 750
            GGFSQRGE LDPDEDVYGSNDINSSPSE FGAD+GGMVPMGKEPQLWEFARDV TSLVSDLAVIPLWQVKVSAVAHRGRLPELWPFIGYRKA+MAII EEGTSSLFRGWGPVCAAGLLRYFRRSKLLYTDYYWKTTHRVTTRFIMRSDSYSRHVNDPEVLAQTYEGFATRILWA ILHPFDLLATRMMTESRPEYATG +SVRHVL+QSGFAGLFLGVRSSILNVLLPFG  ++  VPF + TRR+LDGM
Sbjct:   67 GGFSQRGEELDPDEDVYGSNDINSSPSERFGADDGGMVPMGKEPQLWEFARDVVTSLVSDLAVIPLWQVKVSAVAHRGRLPELWPFIGYRKAMMAIINEEGTSSLFRGWGPVCAAGLLRYFRRSKLLYTDYYWKTTHRVTTRFIMRSDSYSRHVNDPEVLAQTYEGFATRILWAGILHPFDLLATRMMTESRPEYATGTASVRHVLKQSGFAGLFLGVRSSILNVLLPFGNWYLLGVPFLIKTRRMLDGM 316
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BLAST of mRNA_Ecto-sp13_S_contig12660.2203.1 vs. uniprot
Match: A0A836CAD8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAD8_9STRA)

HSP 1 Score: 189 bits (481), Expect = 1.660e-53
Identity = 111/254 (43.70%), Postives = 137/254 (53.94%), Query Frame = 1 
Query:  127 EPQLWEFARDVATSLVSDLAVIPLWQVKVSAVAHRGRLPELWPFIGYRKALMAIIIEEGTSSLFRGWGPVCAAGLLRYFRRSKLLYTDYYWKTTHRVTTRFIMRSDS-------YSRHVNDPEVLAQTYEGFATRIL--------------------------WASILHPFDLLATRMMTESRPEYATGASSVRHVLEQSG--------------FAGLFLGVRSSILNVLLPFGETFISWVPFFVMTRRVLDG 747
            E  L E  R V TS++SDLAV+P W VKVSAVA RGRLPELWPF GYR A  AI  EEG + LFRG  P+CA G+LRY RR++ LY+DYYWKTT R+T R +++  S       ++    DPE+    YEG   R +                          WA  LHPFDLLATRM+TE+   YAT  +++R                     +AGLF GVRSSI+   LP    +   VPF V TRR+   
Sbjct:  123 ESGLREVVRVVLTSVLSDLAVLPFWTVKVSAVAARGRLPELWPFQGYRVAFAAIAREEGWAGLFRGAAPICAGGILRYLRRNRRLYSDYYWKTTQRLTARLVIKDRSARAEMAVHAALALDPEMAVHAYEGVLGRAVCSDRSXXXXXXXXXXXXXXXXXXXXVWAVALHPFDLLATRMITEAGARYATVRAALRTAAGSXXXXXXXXXXXAGDGHWAGLFAGVRSSIIGACLPCSSWYALGVPFLVKTRRMASA 376
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12660.2203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRK1_ECTSI4.870e-16492.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAD8_9STRA1.660e-5343.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12660contigEcto-sp13_S_contig12660:1153..4977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size750
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionMitochondrial substrate/solute carrier
Ec32 orthologEc-09_000240.1
Cds size750
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12660.2203.1prot_Ecto-sp13_S_contig12660.2203.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12660 1153..4977 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462676.2680569-CDS-Ecto-sp13_S_contig12660:1152..13411681462676.2680569-CDS-Ecto-sp13_S_contig12660:1152..1341Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12660 1153..1341 +
1681462676.277255-CDS-Ecto-sp13_S_contig12660:1604..16881681462676.277255-CDS-Ecto-sp13_S_contig12660:1604..1688Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12660 1605..1688 +
1681462676.2857006-CDS-Ecto-sp13_S_contig12660:2586..26691681462676.2857006-CDS-Ecto-sp13_S_contig12660:2586..2669Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12660 2587..2669 +
1681462676.2967048-CDS-Ecto-sp13_S_contig12660:2911..29941681462676.2967048-CDS-Ecto-sp13_S_contig12660:2911..2994Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12660 2912..2994 +
1681462676.3058846-CDS-Ecto-sp13_S_contig12660:3328..34711681462676.3058846-CDS-Ecto-sp13_S_contig12660:3328..3471Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12660 3329..3471 +
1681462676.314451-CDS-Ecto-sp13_S_contig12660:4095..42191681462676.314451-CDS-Ecto-sp13_S_contig12660:4095..4219Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12660 4096..4219 +
1681462676.3230145-CDS-Ecto-sp13_S_contig12660:4933..49771681462676.3230145-CDS-Ecto-sp13_S_contig12660:4933..4977Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12660 4934..4977 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12660.2203.1

>prot_Ecto-sp13_S_contig12660.2203.1 ID=prot_Ecto-sp13_S_contig12660.2203.1|Name=mRNA_Ecto-sp13_S_contig12660.2203.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=250bp
GGFSQRGEGLDPDEDVYGSNDINSSPSEGFGADNGGMVPMGKEPQLWEFA
RDVATSLVSDLAVIPLWQVKVSAVAHRGRLPELWPFIGYRKALMAIIIEE
GTSSLFRGWGPVCAAGLLRYFRRSKLLYTDYYWKTTHRVTTRFIMRSDSY
SRHVNDPEVLAQTYEGFATRILWASILHPFDLLATRMMTESRPEYATGAS
SVRHVLEQSGFAGLFLGVRSSILNVLLPFGETFISWVPFFVMTRRVLDGM
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mRNA from alignment at Ecto-sp13_S_contig12660:1153..4977+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12660.2203.1 ID=mRNA_Ecto-sp13_S_contig12660.2203.1|Name=mRNA_Ecto-sp13_S_contig12660.2203.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12660:1153..4977+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGGGTTCAGCCAACGGGGGGAGGGGCTTGACCCCGATGAAGACGTTTA
CGGCAGCAACGACATCAACAGCAGTCCCTCCGAAGGGTTCGGAGCAGACA
ACGGGGGCATGGTGCCCATGGGGAAGGAGCCGCAACTGTGGGAGTTCGCG
AGGGACGTGGCGACATCTCTGGTCAGCGACCTAGCAGTGGTGAGAAGGGA
AAGGGAATGTGTTGTGGATTCTGCTCGTTGTTGTTGCTTTTTTTTGCGAT
GCTTCCGTGGTGTTGGTGTTGCTGCTGCTGCTGCCTGCTGCCTGCTTCAT
TGCTGTTGCTATTGTTACCGCTGCTGCTTGCCGCTGCCGCTGCCGCTGCC
GCCGCCGCCGCCACGTGTTGTTGTCGTTGGTAATGTTGTTGCAAGCCATA
TTTTCATCTATCTTTCATTGTTGTTGTTGCTGTCACCCTTGTGCTGTTTT
AGATTCCGCTGTGGCAGGTCAAGGTCAGCGCCGTGGCGCACAGAGGTCGA
CTGCCGGAGCTGTGGCCTTTCATCGGGTACAGGAAGGTGACGTGGGATTT
CCGTGGATAGCCGAAGATACCCCCCCCCCCCCCCGGGGCCTCCACCAAGC
AGTCCGTACGTATCGACCGAAACGTAATTGTTGAAATGCTACATGTCTTT
TTGACCACGTAGCAAGATGGCAAAGGCCGAGCGATTCGTCCTTTGAGTTT
TGCAGAATGGTCGGAGAAGTTTCCTTCTGGCCTTACTTTTGCCGTTATTT
GCTCCGAGATATGATTCGGTAACAGTAACGTGCTCACGAACGTCGTCCTG
CACGGGCTACTGTAGCTACAGCACTGGGTAGCAGAGGTCGGAACGATTTT
GTTGCTGCAATTAGTAGGTTTAATGCGGTGGGAGTAAAGTAGCTCCGACA
GCGACGTTGATAACGGCAAGAGCACAGCAACAACCAGAAGCTATATCATT
TCGATATCCACTCCTTGCTTCATCATGTCCAGTACCGGTGTTGTCCTTGT
TCTTGCGGTCATCTTCACGCTTGATATCATTCCGATTTCTGCTCAGCCGC
TTCCAACACCCGTACTGGTCCAACTGACGCGGACCTTCTGAGTGCTAGGA
CTATTCCGGCTGTGATCACAGCAAACGCCTCCTTCCATTAGTTCGTCCCA
TGAGGTCCTAATCGGCCTATGATAGGCTCCTTCTGGACGACGCAATGGAA
GGGTCCCAAGGCCGCGGCGGAATAGGCGGGGATGGATCTGCCAAATCGTC
TCGTCTCGTGTACGTTCAGTGTTTTGACGAGAGGTGTCTCCTCTGTGGGG
GCCCCTTTGTCCTTCGTGAACCTTTTGTGCTGTGTGCGTAGCGAGGCCTC
ATGTCTGTCGGCCTTGCTGCACCTCTCTTATCGACTCAACTTATTTTTTT
CTCGTTTTTGGATGCGACGCGATGTTAATGTTAGGCTTTGATGGCCATCA
TCATCGAGGAGGGAACGTCGTCCTTGTTTCGAGGGTGGGGACCCGTCTGT
GCTGCCGGTCTCCTCAGGTGATGACGTCATCATCATCCTTATGTCTTCTG
TCACCTGGTGTCTCATGTCACCAACGGGAGGTGTACGCACGCAAAACCAC
TATCTTTCGTAGAAAAGCGAGTGGTACACGCGGCTTGCTGGTGAAAAGAA
GGAATGGACGGTTTCCTCGTGTAGCCGACGACGGTTTTGGTCGGCGGTGT
GGCTGAAACAATGTGTCTTCGCTGTGGAAATGATCACGATAACGGTCTTG
TGCGTGCAGGTATTTCCGTCGGAGCAAGCTGCTGTACACGGACTACTACT
GGAAAACCACACACCGCGTCACCACGAGGTTCATCATGCGATGTGAGAAT
GAGTGCTGTGTAGGACAGGAGATGATGAGCAACGTGTTTCTTTCCTGACC
CCCATGCGTTTTTGTTGTTGTTGTTTTTACCAGAAGTCCATTTTGTTGCT
CAACAGTCTACCCAACGTAACCCTCCCTGTAACTCTTCGTCTTTGGTCTA
GCAACAAGTCCATCTTGCCCCTACATAGTCTACCCATCATCACCCTCCCT
AGGTTCCCGTCTTGAAAAATAGCAAGAAGTTCGTCTTCTTTACATAATAA
GTAGTCCAACCGACCTAACCCTCCCTAACTCTTCTTCTGGCCCCCTCCTT
TGGTGTCTCGTTGTCGCCTGTTTTAGCGGACAGCTATAGCCGTCACGTCA
ACGACCCGGAGGTCTTGGCCCAGACCTACGAAGGTTTCGCCACGAGAATA
CTGTGGGCTAGCATCCTTCACCCCTTCGACCTCCTGGCGACAAGGATGAT
GACGGAATCACGCCCCGAGGTGAGCGATGCAGTCTTAAGGGTATCGATAA
TACAACCATATGAGTCGGGAGTGTCGGCGGTTTGTACGGTAGGTACTGTA
CCACGTGGGGCTGATTTTTGGGGGCTCGATCACGTGGTGCACAGTAGTAG
TGCAGGGTCAGCGCCAATGCTGAGAGATGGGGTGAAGGTGCAAGTTTGTG
ATGCTGGAAGGATGTTTGTCGGGTCGGCGATTGGGGAACGATCCAGCTTC
GAAATCGGTCCGAGAGGTTGCTGTTGTTGTTGTTGGTGGTGTTGGTGTCA
CTCTGTTGTTGTTGTTGTTTGTTGTCGTTGTTGTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGGTATTGGTGTTGTTTGTGTTGTTGCTGTGTCG
TTCGTGGTGCTTGTAGGCGGCTGTAGCTGCTGACTGTTTCGCCCAACATG
ACCTCATCTTTTTGACCTAGAGTCTTCTTTGTCTCCCCCACCCCTCTTGT
TCTCGTGTGTGCCTTGCCCTTCCATCATGGAACACATACCGATATGGCAA
CGACAATGGCATTGACAATGACAACGACATCAACAATGCCCACGGCAATG
CCCATGGCAATGGCAATGGAAATGGTCATGGTAATGGCAACAGTATGCCA
CCGGAGCGTCGTCTGTGCGACACGTCCTTGAGCAAAGCGGATTTGCTGGG
CTGTTCCTAGGGGTTAGGTCGTCAATCTTGAACGTTCTCCTTCCCTTCGG
TGAGACTTTTATTTCTTGTGTCTACTGCTGTATCCACAGTATGCGGGATG
GTGGCCTTGAATGTAAAACCCCCAATTAAAATCATTAGACCCGTTGGGGT
TTTGCTTTATTCTACGGAAAATGAGTACCTGATCCATCTTTGTCCCAAAC
GTAGGAGTTCAGGATAGATTCGTGGCAGTGATTTACAGGGTTGTGGCTTG
TAGCAACACAAAATCAAACCATTGGCAGACTGTCAGCACTAAATTAAACC
TTTAGAGCTGCGTTTCGGTTGCTGAGGCAGTATGTCGTAAGGCTGGGAGG
AAGGGATGATCTATGGTGTCAACTTTTGCGCTGAATCGCTCGTGTAACCT
CCTACACGCTCAATGTCTTGTCTTAAACCCCTGTACACCCCATCTGTTAT
CTTGAATGACCATGTTTTGTCTAAAACCGTGTACGTCTGCGACATAACTC
TGGTGTGGTTGTAGACGGTGCTCGCACGGCGAGGAAAAAGCGAACCTATA
TCCCCTACAACTGTTTATGTTGCCAACTATGATCCGCGATGATGATGCCG
TTTATCCTACGGCGTTGCCACAAAGTGTAGAGGTGGCTATGTTTTTTTTT
AGAGGACGATGGTGTTTATCGGCAGCATCATAGAAATCGCTTCACCATTG
GTGTGTCCTTTCTACGCGTGTGCGTTTTCTGTGTGTGTGTGTGTGTTTTT
TTTTTTTTTTTCGGGAACTTCTATATCCTAGGGGTCCCCTTCTTTGTCAT
GACTCGCAGGGTGCTGGATGGCATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12660:1153..4977+

>mRNA_Ecto-sp13_S_contig12660.2203.1 ID=mRNA_Ecto-sp13_S_contig12660.2203.1|Name=mRNA_Ecto-sp13_S_contig12660.2203.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=750bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12660:1153..4977+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGGGTTCAGCCAACGGGGGGAGGGGCTTGACCCCGATGAAGACGTTTA
CGGCAGCAACGACATCAACAGCAGTCCCTCCGAAGGGTTCGGAGCAGACA
ACGGGGGCATGGTGCCCATGGGGAAGGAGCCGCAACTGTGGGAGTTCGCG
AGGGACGTGGCGACATCTCTGGTCAGCGACCTAGCAGTGATTCCGCTGTG
GCAGGTCAAGGTCAGCGCCGTGGCGCACAGAGGTCGACTGCCGGAGCTGT
GGCCTTTCATCGGGTACAGGAAGGCTTTGATGGCCATCATCATCGAGGAG
GGAACGTCGTCCTTGTTTCGAGGGTGGGGACCCGTCTGTGCTGCCGGTCT
CCTCAGGTATTTCCGTCGGAGCAAGCTGCTGTACACGGACTACTACTGGA
AAACCACACACCGCGTCACCACGAGGTTCATCATGCGATCGGACAGCTAT
AGCCGTCACGTCAACGACCCGGAGGTCTTGGCCCAGACCTACGAAGGTTT
CGCCACGAGAATACTGTGGGCTAGCATCCTTCACCCCTTCGACCTCCTGG
CGACAAGGATGATGACGGAATCACGCCCCGAGTATGCCACCGGAGCGTCG
TCTGTGCGACACGTCCTTGAGCAAAGCGGATTTGCTGGGCTGTTCCTAGG
GGTTAGGTCGTCAATCTTGAACGTTCTCCTTCCCTTCGGTGAGACTTTTA
TTTCTTGGGTCCCCTTCTTTGTCATGACTCGCAGGGTGCTGGATGGCATG
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