mRNA_Ecto-sp13_S_contig12656.2199.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12656.2199.1
Unique NamemRNA_Ecto-sp13_S_contig12656.2199.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12656.2199.1 vs. uniprot
Match: A0A6H5KB16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB16_9PHAE)

HSP 1 Score: 328 bits (842), Expect = 5.080e-108
Identity = 183/215 (85.12%), Postives = 192/215 (89.30%), Query Frame = 1
Query:   31 SLQVRCPSESMPKVTEMVGALSPLARLDEMHPSLAKFSVPAAGELGDRPPARTGAGEGVTEEVAM-GGLSLSKAFETIESRKTELQVWDYSISQATLETIFMSFAKHQEEEVASVPGVQYTDTDAGNVDAGEQHHGLSSGGNSHSGDGEGGGDG---LRQGRSRSPQSMDVEMGRLGGGRCHSRERGSSQEXXXXEMVHVEEAFRSGEGESAALL 663
            SLQVRCPSESMPKVTEMVG LSPLARLDEMHPSLAKFSVPAAGELGDRPPARTGAGEGVT EVAM GGLSLSKAFETIESRKTEL+VWDYSISQATLE+IFMSFAKHQEEEVASVPGVQYTDTDAG+VDAGEQHHGLS+GGN+HSGD          +RQGRSR PQ MDVEMGRLGGG+CHSRER SS E    E+V VEE FRSGEGE+AALL
Sbjct:    3 SLQVRCPSESMPKVTEMVGTLSPLARLDEMHPSLAKFSVPAAGELGDRPPARTGAGEGVTGEVAMMGGLSLSKAFETIESRKTELRVWDYSISQATLESIFMSFAKHQEEEVASVPGVQYTDTDAGDVDAGEQHHGLSAGGNNHSGDXXXXXXXXXXVRQGRSRPPQLMDVEMGRLGGGKCHSRERDSSHE----EVVRVEEEFRSGEGENAALL 213          
BLAST of mRNA_Ecto-sp13_S_contig12656.2199.1 vs. uniprot
Match: D7G7Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Z8_ECTSI)

HSP 1 Score: 352 bits (902), Expect = 4.060e-104
Identity = 192/212 (90.57%), Postives = 200/212 (94.34%), Query Frame = 1
Query:   31 SLQVRCPSESMPKVTEMVGALSPLARLDEMHPSLAKFSVPAAGELGDRPPARTGAGEGVTEEVAMGGLSLSKAFETIESRKTELQVWDYSISQATLETIFMSFAKHQEEEVASVPGVQYTDTDAGNVDAGEQHHGLSSGGNSHSGDGEGGGDGLRQGRSRSPQSMDVEMGRLGGGRCHSRERGSSQEXXXXEMVHVEEAFRSGEGESAALLV 666
            S++VRCPSESMPKVTEMVGALSPLARLDEMHPSLAKFSVPAAGELGDRPPARTG GEGVT EVA GGLSLSKAFETIESRKTELQVWDYSISQATLETIFMSFAKHQEEEVASVPGVQYTD+DAGNVDAGEQHHGLSSGGNSHSGDG+GGGD +RQGRSRSPQ MDVEMGRLGGG+C SRER S   XXXX +VHVEE FRSGEGE+AALLV
Sbjct: 2004 SIEVRCPSESMPKVTEMVGALSPLARLDEMHPSLAKFSVPAAGELGDRPPARTGFGEGVTGEVATGGLSLSKAFETIESRKTELQVWDYSISQATLETIFMSFAKHQEEEVASVPGVQYTDSDAGNVDAGEQHHGLSSGGNSHSGDGDGGGD-VRQGRSRSPQLMDVEMGRLGGGKCRSRERDSXXXXXXXXVVHVEEVFRSGEGENAALLV 2214          
BLAST of mRNA_Ecto-sp13_S_contig12656.2199.1 vs. uniprot
Match: A0A0G2STG8_PETMA (ABCA1a (Fragment) n=1 Tax=Petromyzon marinus TaxID=7757 RepID=A0A0G2STG8_PETMA)

HSP 1 Score: 61.6 bits (148), Expect = 2.860e-6
Identity = 37/113 (32.74%), Postives = 57/113 (50.44%), Query Frame = 1
Query:   22 YT*SLQVRCPSESMPKVTEMVGALSPLARLDEMHPSLAKFSVPAAGELGDRPPARTGAGEGVTEEVAMGGLSLSKAFETIESRKTELQVWDYSISQATLETIFMSFAKHQEEE 360
            YT +L+V      +P V E +G+  P + L E H ++ ++ +P+A                          SL+K F  +  RK EL V DYS+SQ TL+ +F++FAKHQ +E
Sbjct: 1358 YTVTLRVAGSPPVLPPVEEFIGSAFPGSLLKERHHNMLQYQLPSAES------------------------SLAKIFNLLALRKEELNVEDYSVSQTTLDQVFINFAKHQSDE 1446          
BLAST of mRNA_Ecto-sp13_S_contig12656.2199.1 vs. uniprot
Match: UPI0014023810 (phospholipid-transporting ATPase ABCA1-like isoform X1 n=4 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014023810)

HSP 1 Score: 61.6 bits (148), Expect = 3.050e-6
Identity = 37/113 (32.74%), Postives = 57/113 (50.44%), Query Frame = 1
Query:   22 YT*SLQVRCPSESMPKVTEMVGALSPLARLDEMHPSLAKFSVPAAGELGDRPPARTGAGEGVTEEVAMGGLSLSKAFETIESRKTELQVWDYSISQATLETIFMSFAKHQEEE 360
            YT +L+V      +P V E +G+  P + L E H ++ ++ +P+A                          SL+K F  +  RK EL V DYS+SQ TL+ +F++FAKHQ +E
Sbjct: 2170 YTVTLRVAGSPPVLPPVEEFIGSAFPGSLLKERHHNMLQYQLPSAES------------------------SLAKIFNLLALRKEELNVEDYSVSQTTLDQVFINFAKHQSDE 2258          
BLAST of mRNA_Ecto-sp13_S_contig12656.2199.1 vs. uniprot
Match: A0A4W3HZE1_CALMI (Uncharacterized protein n=3 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3HZE1_CALMI)

HSP 1 Score: 56.2 bits (134), Expect = 8.670e-6
Identity = 34/113 (30.09%), Postives = 55/113 (48.67%), Query Frame = 1
Query:   22 YT*SLQVRCPSESMPKVTEMVGALSPLARLDEMHPSLAKFSVPAAGELGDRPPARTGAGEGVTEEVAMGGLSLSKAFETIESRKTELQVWDYSISQATLETIFMSFAKHQEEE 360
            YT  L++   +  +P V E +GA  P   L E HP++ ++ +PA                           SL+K F  + S +  L++ DYS+SQ TL+ +F++FAK Q +E
Sbjct:   36 YTIVLRLCGLASDLPPVEEFMGASFPGCVLKERHPNMLQYQLPATH------------------------CSLAKIFSALTSNRQRLRIEDYSVSQTTLDQVFVNFAKDQSDE 124          
BLAST of mRNA_Ecto-sp13_S_contig12656.2199.1 vs. uniprot
Match: A0A7S1UEC4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UEC4_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.050e-5
Identity = 37/83 (44.58%), Postives = 46/83 (55.42%), Query Frame = 1
Query:  181 ARTGAGEGVTEE------VAMGG--LSLSKAFETIESRKTELQVWDYSISQATLETIFMSFAKHQEEEVASVPGVQYTDTDAG 405
            AR G G  V E       V++ G  + L + FE IE+ + E  V +YS+SQ TLE +FM FAK Q EE   V GV Y D D G
Sbjct:  459 ARLGPGARVVERHSPHCRVSLPGTAMPLGRIFEAIEAHQEEAGVLEYSVSQGTLEQVFMGFAKRQREERGQVAGVVYEDDDVG 541          
BLAST of mRNA_Ecto-sp13_S_contig12656.2199.1 vs. uniprot
Match: A0A7S1UE30_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UE30_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.470e-5
Identity = 37/83 (44.58%), Postives = 46/83 (55.42%), Query Frame = 1
Query:  181 ARTGAGEGVTEE------VAMGG--LSLSKAFETIESRKTELQVWDYSISQATLETIFMSFAKHQEEEVASVPGVQYTDTDAG 405
            AR G G  V E       V++ G  + L + FE IE+ + E  V +YS+SQ TLE +FM FAK Q EE   V GV Y D D G
Sbjct: 1230 ARLGPGARVVERHSPHCRVSLPGTAMPLGRIFEAIEAHQEEAGVLEYSVSQGTLEQVFMGFAKRQREERGQVAGVVYEDDDVG 1312          
BLAST of mRNA_Ecto-sp13_S_contig12656.2199.1 vs. uniprot
Match: A0A4W3I096_CALMI (Uncharacterized protein n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3I096_CALMI)

HSP 1 Score: 56.2 bits (134), Expect = 1.990e-5
Identity = 34/113 (30.09%), Postives = 55/113 (48.67%), Query Frame = 1
Query:   22 YT*SLQVRCPSESMPKVTEMVGALSPLARLDEMHPSLAKFSVPAAGELGDRPPARTGAGEGVTEEVAMGGLSLSKAFETIESRKTELQVWDYSISQATLETIFMSFAKHQEEE 360
            YT  L++   +  +P V E +GA  P   L E HP++ ++ +PA                           SL+K F  + S +  L++ DYS+SQ TL+ +F++FAK Q +E
Sbjct:   86 YTIVLRLCGLASDLPPVEEFMGASFPGCVLKERHPNMLQYQLPATH------------------------CSLAKIFSALTSNRQRLRIEDYSVSQTTLDQVFVNFAKDQSDE 174          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12656.2199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KB16_9PHAE5.080e-10885.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7Z8_ECTSI4.060e-10490.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0G2STG8_PETMA2.860e-632.74ABCA1a (Fragment) n=1 Tax=Petromyzon marinus TaxID... [more]
UPI00140238103.050e-632.74phospholipid-transporting ATPase ABCA1-like isofor... [more]
A0A4W3HZE1_CALMI8.670e-630.09Uncharacterized protein n=3 Tax=Callorhinchus mili... [more]
A0A7S1UEC4_9STRA1.050e-544.58Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1UE30_9STRA1.470e-544.58Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A4W3I096_CALMI1.990e-530.09Uncharacterized protein n=1 Tax=Callorhinchus mili... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12656contigEcto-sp13_S_contig12656:3294..4916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score340.9
Seed ortholog evalue4.1e-91
Seed eggNOG ortholog2880.D7G7Z8
Preferred nameABCA6
Model size1468
KEGG koko:K05643,ko:K05645
KEGG TC3.A.1.211
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006810,GO:0006869,GO:0008150,GO:0009653,GO:0010876,GO:0015399,GO:0015405,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030587,GO:0031288,GO:0032502,GO:0033036,GO:0042623,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044424,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0071702,GO:0090702,GO:0099120
Exons2
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0059@2759
Cds size609
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462675.9086454-UTR-Ecto-sp13_S_contig12656:3293..33531681462675.9086454-UTR-Ecto-sp13_S_contig12656:3293..3353Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12656 3294..3353 +
1681462675.933884-UTR-Ecto-sp13_S_contig12656:4117..49161681462675.933884-UTR-Ecto-sp13_S_contig12656:4117..4916Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12656 4118..4916 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462675.918089-CDS-Ecto-sp13_S_contig12656:3353..35781681462675.918089-CDS-Ecto-sp13_S_contig12656:3353..3578Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12656 3354..3578 +
1681462675.925918-CDS-Ecto-sp13_S_contig12656:3733..41171681462675.925918-CDS-Ecto-sp13_S_contig12656:3733..4117Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12656 3734..4117 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12656.2199.1prot_Ecto-sp13_S_contig12656.2199.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12656 3354..4117 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12656.2199.1

>prot_Ecto-sp13_S_contig12656.2199.1 ID=prot_Ecto-sp13_S_contig12656.2199.1|Name=mRNA_Ecto-sp13_S_contig12656.2199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=203bp
MPKVTEMVGALSPLARLDEMHPSLAKFSVPAAGELGDRPPARTGAGEGVT
EEVAMGGLSLSKAFETIESRKTELQVWDYSISQATLETIFMSFAKHQEEE
VASVPGVQYTDTDAGNVDAGEQHHGLSSGGNSHSGDGEGGGDGLRQGRSR
SPQSMDVEMGRLGGGRCHSRERGSSQEEEEEEMVHVEEAFRSGEGESAAL
LV*
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mRNA from alignment at Ecto-sp13_S_contig12656:3294..4916+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12656.2199.1 ID=mRNA_Ecto-sp13_S_contig12656.2199.1|Name=mRNA_Ecto-sp13_S_contig12656.2199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1623bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12656:3294..4916+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCTCTACGCCTGTGCTTGTATACACGTAATCTCTGCAGGTGCGCTGTCC CTCGGAGTCCATGCCGAAAGTGACCGAGATGGTCGGGGCCCTGTCCCCCC TGGCGAGGCTCGACGAGATGCACCCCTCGCTGGCAAAGTTCAGCGTGCCG GCGGCGGGAGAGCTTGGCGATCGACCCCCCGCCAGAACCGGCGCCGGCGA AGGGGTAACAGAGGAAGTGGCGATGGGGGGGCTAAGTCTGTCCAAGGCGT TCGAGACCATCGAGTCTCGAAAGACCGAACTCCAGGTGAGAACACATTTT TTTTGTGTGTTTGTCCTCGGTTTGACGGGCGGGATATCACGAAATCAAGT TGCTCTCATTTAAGTCTCCCCCGCCGGGACCAAGAGAACGGAATTGATCG TACTTTTTTTTCGCACTCCCCTGCTTCCGCTGTTCTGTAGGTGTGGGACT ACTCCATCAGTCAGGCGACGCTAGAAACCATCTTCATGAGCTTCGCGAAG CACCAGGAGGAAGAGGTCGCTAGCGTGCCGGGGGTGCAGTACACCGACAC CGATGCCGGAAACGTCGACGCCGGCGAGCAGCATCATGGTCTGTCCTCCG GGGGCAACAGCCACAGCGGCGACGGCGAAGGCGGCGGCGACGGCTTGCGG CAAGGGCGATCCCGTTCTCCCCAGTCGATGGACGTGGAAATGGGCAGGCT TGGGGGGGGGAGATGCCACTCCCGCGAAAGAGGTTCTTCACAAGAAGAAG AAGAAGAAGAAATGGTCCATGTCGAAGAAGCGTTCCGCTCCGGGGAAGGA GAAAGTGCGGCTCTTCTTGTATGATGTGTTGCGTTGGCGTGTGTTGCCGG GGGGGCACAAACCCCGAAATTGTTGTTTTTAATGCGCTCGAATGGTTGTG GTTCCGATAGTCGTACGCATGCGGCTTAAGAACCCCCCCCCACGGTGTTG GAAACAGTTTTGCTTGTAGAAAGATTCACCGTGTGTGTCTCAACGTTGTT TGTGTGGCATCTTCGTATTATGTCGTCCTACAAATGTTACGGTGGAGGGT ACTTTGATGTTTTGGGCTCATGTTGACCCGGGTAAAATAGTGCCAATTGT CTAATGTGGATGTATTATCTTGTGCCGAATTCTCAACTGCACATACACTC ATGGTGAGCCGTTGTTATGTGGTCTGATCGCAAGACTTTTTGTCGAATCT ATGTCGGAAAACGTTGAGTAAGCGGTCCTGTAAGGTTCTTGCGACCGTTT GTTGTAACTGTGAAAGGAGAGCTGATGCAGTCTTGTCAAGCGCATTCTTT GTTGATGTACACCGTGCGTTTTTAACAATGAAAAAGAAAACCAAGTTCTT TGAGAAGGACCGCGTGTTGTTCTTCTGACTCAGGATTTCAACATCGCGCT ATGCGGTTTCTATGATCTGTAGGACGGCTGTTAGGCCGATCGATCGATGC GAACCCCAGCAATTTCGATTAAATTTCGATCCCCTTCTTCGAAACAGTTC CGTTTGCTACATACATTCTAAACCAGCTGTGCCACTCCTTCACAGTTTAA CGTGATGAAGGTTCGATGGGCGCACCGCAGAGTAGTTATTCCTAGTGTCC CAAAGATCGGAACTCTTCAGCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12656:3294..4916+

>mRNA_Ecto-sp13_S_contig12656.2199.1 ID=mRNA_Ecto-sp13_S_contig12656.2199.1|Name=mRNA_Ecto-sp13_S_contig12656.2199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=609bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12656:3294..4916+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGAAAGTGACCGAGATGGTCGGGGCCCTGTCCCCCCTGGCGAGGCT
CGACGAGATGCACCCCTCGCTGGCAAAGTTCAGCGTGCCGGCGGCGGGAG
AGCTTGGCGATCGACCCCCCGCCAGAACCGGCGCCGGCGAAGGGGTAACA
GAGGAAGTGGCGATGGGGGGGCTAAGTCTGTCCAAGGCGTTCGAGACCAT
CGAGTCTCGAAAGACCGAACTCCAGGTGTGGGACTACTCCATCAGTCAGG
CGACGCTAGAAACCATCTTCATGAGCTTCGCGAAGCACCAGGAGGAAGAG
GTCGCTAGCGTGCCGGGGGTGCAGTACACCGACACCGATGCCGGAAACGT
CGACGCCGGCGAGCAGCATCATGGTCTGTCCTCCGGGGGCAACAGCCACA
GCGGCGACGGCGAAGGCGGCGGCGACGGCTTGCGGCAAGGGCGATCCCGT
TCTCCCCAGTCGATGGACGTGGAAATGGGCAGGCTTGGGGGGGGGAGATG
CCACTCCCGCGAAAGAGGTTCTTCACAAGAAGAAGAAGAAGAAGAAATGG
TCCATGTCGAAGAAGCGTTCCGCTCCGGGGAAGGAGAAAGTGCGGCTCTT
CTTGTATGA
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