mRNA_Ecto-sp13_S_contig12656.2199.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12656.2199.1 vs. uniprot
Match: A0A6H5KB16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB16_9PHAE) HSP 1 Score: 328 bits (842), Expect = 5.080e-108 Identity = 183/215 (85.12%), Postives = 192/215 (89.30%), Query Frame = 1
Query: 31 SLQVRCPSESMPKVTEMVGALSPLARLDEMHPSLAKFSVPAAGELGDRPPARTGAGEGVTEEVAM-GGLSLSKAFETIESRKTELQVWDYSISQATLETIFMSFAKHQEEEVASVPGVQYTDTDAGNVDAGEQHHGLSSGGNSHSGDGEGGGDG---LRQGRSRSPQSMDVEMGRLGGGRCHSRERGSSQEXXXXEMVHVEEAFRSGEGESAALL 663
SLQVRCPSESMPKVTEMVG LSPLARLDEMHPSLAKFSVPAAGELGDRPPARTGAGEGVT EVAM GGLSLSKAFETIESRKTEL+VWDYSISQATLE+IFMSFAKHQEEEVASVPGVQYTDTDAG+VDAGEQHHGLS+GGN+HSGD +RQGRSR PQ MDVEMGRLGGG+CHSRER SS E E+V VEE FRSGEGE+AALL
Sbjct: 3 SLQVRCPSESMPKVTEMVGTLSPLARLDEMHPSLAKFSVPAAGELGDRPPARTGAGEGVTGEVAMMGGLSLSKAFETIESRKTELRVWDYSISQATLESIFMSFAKHQEEEVASVPGVQYTDTDAGDVDAGEQHHGLSAGGNNHSGDXXXXXXXXXXVRQGRSRPPQLMDVEMGRLGGGKCHSRERDSSHE----EVVRVEEEFRSGEGENAALL 213
BLAST of mRNA_Ecto-sp13_S_contig12656.2199.1 vs. uniprot
Match: D7G7Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Z8_ECTSI) HSP 1 Score: 352 bits (902), Expect = 4.060e-104 Identity = 192/212 (90.57%), Postives = 200/212 (94.34%), Query Frame = 1
Query: 31 SLQVRCPSESMPKVTEMVGALSPLARLDEMHPSLAKFSVPAAGELGDRPPARTGAGEGVTEEVAMGGLSLSKAFETIESRKTELQVWDYSISQATLETIFMSFAKHQEEEVASVPGVQYTDTDAGNVDAGEQHHGLSSGGNSHSGDGEGGGDGLRQGRSRSPQSMDVEMGRLGGGRCHSRERGSSQEXXXXEMVHVEEAFRSGEGESAALLV 666
S++VRCPSESMPKVTEMVGALSPLARLDEMHPSLAKFSVPAAGELGDRPPARTG GEGVT EVA GGLSLSKAFETIESRKTELQVWDYSISQATLETIFMSFAKHQEEEVASVPGVQYTD+DAGNVDAGEQHHGLSSGGNSHSGDG+GGGD +RQGRSRSPQ MDVEMGRLGGG+C SRER S XXXX +VHVEE FRSGEGE+AALLV
Sbjct: 2004 SIEVRCPSESMPKVTEMVGALSPLARLDEMHPSLAKFSVPAAGELGDRPPARTGFGEGVTGEVATGGLSLSKAFETIESRKTELQVWDYSISQATLETIFMSFAKHQEEEVASVPGVQYTDSDAGNVDAGEQHHGLSSGGNSHSGDGDGGGD-VRQGRSRSPQLMDVEMGRLGGGKCRSRERDSXXXXXXXXVVHVEEVFRSGEGENAALLV 2214
BLAST of mRNA_Ecto-sp13_S_contig12656.2199.1 vs. uniprot
Match: A0A0G2STG8_PETMA (ABCA1a (Fragment) n=1 Tax=Petromyzon marinus TaxID=7757 RepID=A0A0G2STG8_PETMA) HSP 1 Score: 61.6 bits (148), Expect = 2.860e-6 Identity = 37/113 (32.74%), Postives = 57/113 (50.44%), Query Frame = 1
Query: 22 YT*SLQVRCPSESMPKVTEMVGALSPLARLDEMHPSLAKFSVPAAGELGDRPPARTGAGEGVTEEVAMGGLSLSKAFETIESRKTELQVWDYSISQATLETIFMSFAKHQEEE 360
YT +L+V +P V E +G+ P + L E H ++ ++ +P+A SL+K F + RK EL V DYS+SQ TL+ +F++FAKHQ +E
Sbjct: 1358 YTVTLRVAGSPPVLPPVEEFIGSAFPGSLLKERHHNMLQYQLPSAES------------------------SLAKIFNLLALRKEELNVEDYSVSQTTLDQVFINFAKHQSDE 1446
BLAST of mRNA_Ecto-sp13_S_contig12656.2199.1 vs. uniprot
Match: UPI0014023810 (phospholipid-transporting ATPase ABCA1-like isoform X1 n=4 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014023810) HSP 1 Score: 61.6 bits (148), Expect = 3.050e-6 Identity = 37/113 (32.74%), Postives = 57/113 (50.44%), Query Frame = 1
Query: 22 YT*SLQVRCPSESMPKVTEMVGALSPLARLDEMHPSLAKFSVPAAGELGDRPPARTGAGEGVTEEVAMGGLSLSKAFETIESRKTELQVWDYSISQATLETIFMSFAKHQEEE 360
YT +L+V +P V E +G+ P + L E H ++ ++ +P+A SL+K F + RK EL V DYS+SQ TL+ +F++FAKHQ +E
Sbjct: 2170 YTVTLRVAGSPPVLPPVEEFIGSAFPGSLLKERHHNMLQYQLPSAES------------------------SLAKIFNLLALRKEELNVEDYSVSQTTLDQVFINFAKHQSDE 2258
BLAST of mRNA_Ecto-sp13_S_contig12656.2199.1 vs. uniprot
Match: A0A4W3HZE1_CALMI (Uncharacterized protein n=3 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3HZE1_CALMI) HSP 1 Score: 56.2 bits (134), Expect = 8.670e-6 Identity = 34/113 (30.09%), Postives = 55/113 (48.67%), Query Frame = 1
Query: 22 YT*SLQVRCPSESMPKVTEMVGALSPLARLDEMHPSLAKFSVPAAGELGDRPPARTGAGEGVTEEVAMGGLSLSKAFETIESRKTELQVWDYSISQATLETIFMSFAKHQEEE 360
YT L++ + +P V E +GA P L E HP++ ++ +PA SL+K F + S + L++ DYS+SQ TL+ +F++FAK Q +E
Sbjct: 36 YTIVLRLCGLASDLPPVEEFMGASFPGCVLKERHPNMLQYQLPATH------------------------CSLAKIFSALTSNRQRLRIEDYSVSQTTLDQVFVNFAKDQSDE 124
BLAST of mRNA_Ecto-sp13_S_contig12656.2199.1 vs. uniprot
Match: A0A7S1UEC4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UEC4_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 1.050e-5 Identity = 37/83 (44.58%), Postives = 46/83 (55.42%), Query Frame = 1
Query: 181 ARTGAGEGVTEE------VAMGG--LSLSKAFETIESRKTELQVWDYSISQATLETIFMSFAKHQEEEVASVPGVQYTDTDAG 405
AR G G V E V++ G + L + FE IE+ + E V +YS+SQ TLE +FM FAK Q EE V GV Y D D G
Sbjct: 459 ARLGPGARVVERHSPHCRVSLPGTAMPLGRIFEAIEAHQEEAGVLEYSVSQGTLEQVFMGFAKRQREERGQVAGVVYEDDDVG 541
BLAST of mRNA_Ecto-sp13_S_contig12656.2199.1 vs. uniprot
Match: A0A7S1UE30_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UE30_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 1.470e-5 Identity = 37/83 (44.58%), Postives = 46/83 (55.42%), Query Frame = 1
Query: 181 ARTGAGEGVTEE------VAMGG--LSLSKAFETIESRKTELQVWDYSISQATLETIFMSFAKHQEEEVASVPGVQYTDTDAG 405
AR G G V E V++ G + L + FE IE+ + E V +YS+SQ TLE +FM FAK Q EE V GV Y D D G
Sbjct: 1230 ARLGPGARVVERHSPHCRVSLPGTAMPLGRIFEAIEAHQEEAGVLEYSVSQGTLEQVFMGFAKRQREERGQVAGVVYEDDDVG 1312
BLAST of mRNA_Ecto-sp13_S_contig12656.2199.1 vs. uniprot
Match: A0A4W3I096_CALMI (Uncharacterized protein n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3I096_CALMI) HSP 1 Score: 56.2 bits (134), Expect = 1.990e-5 Identity = 34/113 (30.09%), Postives = 55/113 (48.67%), Query Frame = 1
Query: 22 YT*SLQVRCPSESMPKVTEMVGALSPLARLDEMHPSLAKFSVPAAGELGDRPPARTGAGEGVTEEVAMGGLSLSKAFETIESRKTELQVWDYSISQATLETIFMSFAKHQEEE 360
YT L++ + +P V E +GA P L E HP++ ++ +PA SL+K F + S + L++ DYS+SQ TL+ +F++FAK Q +E
Sbjct: 86 YTIVLRLCGLASDLPPVEEFMGASFPGCVLKERHPNMLQYQLPATH------------------------CSLAKIFSALTSNRQRLRIEDYSVSQTTLDQVFVNFAKDQSDE 174 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12656.2199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12656.2199.1 >prot_Ecto-sp13_S_contig12656.2199.1 ID=prot_Ecto-sp13_S_contig12656.2199.1|Name=mRNA_Ecto-sp13_S_contig12656.2199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=203bp MPKVTEMVGALSPLARLDEMHPSLAKFSVPAAGELGDRPPARTGAGEGVTback to top mRNA from alignment at Ecto-sp13_S_contig12656:3294..4916+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12656.2199.1 ID=mRNA_Ecto-sp13_S_contig12656.2199.1|Name=mRNA_Ecto-sp13_S_contig12656.2199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1623bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12656:3294..4916+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12656:3294..4916+ >mRNA_Ecto-sp13_S_contig12656.2199.1 ID=mRNA_Ecto-sp13_S_contig12656.2199.1|Name=mRNA_Ecto-sp13_S_contig12656.2199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=609bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12656:3294..4916+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |