mRNA_Ecto-sp13_S_contig12652.2196.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12652.2196.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI) HSP 1 Score: 1085 bits (2806), Expect = 0.000e+0 Identity = 545/582 (93.64%), Postives = 559/582 (96.05%), Query Frame = 3
Query: 354 LTCTEFDGSLVRHETFVFLDVVWLARILKPLLNHKDEETFDGLVHLGDTGDTRVTLKDPSDIASWGRLKNEGVLEPRLVRKLWPNGLSEYVLPTIASLGLTFPLENDPAGGLVVLLRLEHDRPELVGKVIDTFCLNQTPAFSASWKIFLGVPAGAIEKVLTRCCSLGGVQTFWRSGVLVHGGLGDEDGHEIFAVVLEYSPSDNELAAQIFGDISTPAPWAALSYTVSAVSLMLLDFPGLRSRGSLKCPQHGDAMPLANMVTRTGEKILEGGRCRQCSPDTRGLGAAAIDLVRMVDIRLDRDVIFSEVKARFVDLEGQYSFSSSTASSNDEGVLVQKMEEVARTLKDGFDDLKGRLSKVLDSTQESLVRLKTLQAPNYPYPRLVAVEEFASGGTLTRARGMKRVLSKPRGVSTREMTLHFLCPVDMTKVPCGYDGEGYRFRETRRWVKKLSPVLQVAMVTAKVAIKATSGLDVDLSDFLKDVNDGLVDELVDRTLDEDELRRVVSGEEDVGTDMQKQTRASYEALTEFVAKLERRKDARDGDGYVDFRENMQRLSDGWGGEVWVRNENVQKWLDSHSSTTPSR 2099
L EFDGSLVRHETFVFLDVVWLARILKPLLNHKDEETFDGLV+LGDTGDTRVTL+DPSDIASWGRLKNEGVLEPRL RKLWPNGLSEYV+PTIASLGLTFPLENDPAGGLVVLLRLEHDRPELVGKVIDTFCL+QTPA ASWKIFLGVPAGAIEKVLTRCCSLGGVQTFWRSGVLVHGG+G++D IFAVVLEYSPSDNEL AQIFGDISTPAPW ALSY VSAVSLMLLDFPGLRSRGSLKCPQHGDAMPLANMVTRTG+KILEG RCRQCSPDTRGLGAAAIDLVRMVDIRLDRDVIF EVKARFVDLEGQYSFSSSTASSNDEGVLVQKMEEVARTLKDGFDDLKGRLSKVLDSTQESL+RL+TLQAPNYPYPRLVA+EE ASGGTLTRARGMKRVLSK RGV T+EMTLHFLCPVDMTKVPCGYDG+GYRFRETRRWVKKLSPVLQVAMVTAKVAIKATSGLDVDLSDFLKDVNDGLVDELVDR LDEDELRRVVSGEEDVGTDMQKQTRASYEALTE + KLERRKDARDGDGYVDFRENMQRLSDG GGEVWVRNENVQKWLDSHSS PSR
Sbjct: 655 LAIREFDGSLVRHETFVFLDVVWLARILKPLLNHKDEETFDGLVNLGDTGDTRVTLEDPSDIASWGRLKNEGVLEPRLARKLWPNGLSEYVIPTIASLGLTFPLENDPAGGLVVLLRLEHDRPELVGKVIDTFCLDQTPALRASWKIFLGVPAGAIEKVLTRCCSLGGVQTFWRSGVLVHGGVGEQDRSGIFAVVLEYSPSDNELTAQIFGDISTPAPWVALSYVVSAVSLMLLDFPGLRSRGSLKCPQHGDAMPLANMVTRTGDKILEGSRCRQCSPDTRGLGAAAIDLVRMVDIRLDRDVIFREVKARFVDLEGQYSFSSSTASSNDEGVLVQKMEEVARTLKDGFDDLKGRLSKVLDSTQESLMRLQTLQAPNYPYPRLVAIEEIASGGTLTRARGMKRVLSKLRGVGTKEMTLHFLCPVDMTKVPCGYDGDGYRFRETRRWVKKLSPVLQVAMVTAKVAIKATSGLDVDLSDFLKDVNDGLVDELVDRMLDEDELRRVVSGEEDVGTDMQKQTRASYEALTELMGKLERRKDARDGDGYVDFRENMQRLSDGRGGEVWVRNENVQKWLDSHSSAAPSR 1236
BLAST of mRNA_Ecto-sp13_S_contig12652.2196.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI) HSP 1 Score: 983 bits (2542), Expect = 0.000e+0 Identity = 492/582 (84.54%), Postives = 526/582 (90.38%), Query Frame = 3
Query: 354 LTCTEFDGSLVRHETFVFLDVVWLARILKPLLNHKDEETFDGLVHLGDTGDTRVTLKDPSDIASWGRLKNEGVLEPRLVRKLWPNGLSEYVLPTIASLGLTFPLENDPAGGLVVLLRLEHDRPELVGKVIDTFCLNQTPAFSASWKIFLGVPAGAIEKVLTRCCSLGGVQTFWRSGVLVHGGLGDEDGHEIFAVVLEYSPSDNELAAQIFGDISTPAPWAALSYTVSAVSLMLLDFPGLRSRGSLKCPQHGDAMPLANMVTRTGEKILEGGRCRQCSPDTRGLGAAAIDLVRMVDIRLDRDVIFSEVKARFVDLEGQYSFSSSTASSNDEGVLVQKMEEVARTLKDGFDDLKGRLSKVLDSTQESLVRLKTLQAPNYPYPRLVAVEEFASGGTLTRARGMKRVLSKPRGVSTREMTLHFLCPVDMTKVPCGYDGEGYRFRETRRWVKKLSPVLQVAMVTAKVAIKATSGLDVDLSDFLKDVNDGLVDELVDRTLDEDELRRVVSGEEDVGTDMQKQTRASYEALTEFVAKLERRKDARDGDGYVDFRENMQRLSDGWGGEVWVRNENVQKWLDSHSSTTPSR 2099
L+ EFDGSLVRHE FVFLDVVWLARILKPLLNHKDEETFDGLV+LGDTGDTRVTL+DP DIASWGRLKN+GVLEPRL R +WPNGLS+YVLPT+ASLGLTFPL+NDPAGGLVVLLRL DRPE VGKVIDTFCL+QTPAFS SWKIFLGVPAGAIEKVLTRCCSLGGVQTFWRSGVLVHGGLGDEDGHEIFAVVLEYS SDNEL AQIFGDISTPAPW ALSY +SAV LMLLDFPGLRSRGSLKCPQHGDAM L N +T+ G K+LE C QCSPDTRGLGAAAIDLV MVDIRLDRDVIF +VK RFV+LE QYSFSSS ASSNDE VL+QKMEEVARTLKDG DDLKGRL KVLDSTQESL+RLK LQA NYPYPRLVAVEE ASGGT ++A G+ RVL+K RGV T+EM LHFLCPVDMTKVPCGY GEGYRFRE RRWVKKLSPVLQVA+VTAKVA+KATSGLDVDLS+FLKDV DG VDELVD+TLDED L RVV GEED G +M+K+TRASYEAL F+ KLERRKDARDGDGYVDFR+NMQRLSDG GGEVWVRNENV++WLDSHS+ PSR
Sbjct: 555 LSIREFDGSLVRHEMFVFLDVVWLARILKPLLNHKDEETFDGLVNLGDTGDTRVTLEDPLDIASWGRLKNQGVLEPRLARTMWPNGLSKYVLPTLASLGLTFPLKNDPAGGLVVLLRLNPDRPERVGKVIDTFCLDQTPAFSTSWKIFLGVPAGAIEKVLTRCCSLGGVQTFWRSGVLVHGGLGDEDGHEIFAVVLEYSSSDNELTAQIFGDISTPAPWVALSYVISAVRLMLLDFPGLRSRGSLKCPQHGDAMLLVNKMTQAGVKLLEPSGCPQCSPDTRGLGAAAIDLVSMVDIRLDRDVIFRDVKQRFVELESQYSFSSSAASSNDEDVLIQKMEEVARTLKDGLDDLKGRLGKVLDSTQESLMRLKNLQAANYPYPRLVAVEEIASGGTPSKAHGINRVLNKLRGVGTKEMVLHFLCPVDMTKVPCGYGGEGYRFREARRWVKKLSPVLQVAVVTAKVALKATSGLDVDLSNFLKDVQDGFVDELVDQTLDEDTLLRVVLGEEDAGFNMRKETRASYEALRGFMGKLERRKDARDGDGYVDFRDNMQRLSDGRGGEVWVRNENVERWLDSHSNAVPSR 1136
BLAST of mRNA_Ecto-sp13_S_contig12652.2196.1 vs. uniprot
Match: A0A6H5K516_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K516_9PHAE) HSP 1 Score: 828 bits (2140), Expect = 1.710e-289 Identity = 415/592 (70.10%), Postives = 485/592 (81.93%), Query Frame = 3
Query: 351 TLTCTEFDGSLVRHETFVFLDVVWLARILKPLLNHKDEETFDGLVHLGDTGDTRVTLKDPSDIASWGRLKNEGVLEPRLVRKLWPNGLSEYVLPTIASLGLTFPLENDPAGGLVVLLRLEHDRPELVGKVIDTFCLNQTPAFSASWKIFLGVPAGAIEKVLTRCCSLGGVQTFWRSGVLVHGGLGDEDGHEIFAVVLEYSPSDNELAAQIFGDISTPAPWAALSYTVSAVSLMLLDFPGLRSRGSLKCPQHGDAMPLANMVTRTGEKILEGGRCRQCSPDTRGLGAAAIDLVRMVDIRLDRDVIFSEVKARFVDLEGQYSFSSSTASSNDEGVLVQKMEEVART-------LKDGFDDLKGRLSKVLDSTQESLVRLKTLQAPNYPYPRLVAVEEFASGGTLTRARGMKRVLSKPRGVSTREMTLHFLCPVDMTKVPCGYDGEGYRFRETRRWVKKLSPVLQVAMVTAKVAIKATSGLDVDLSDFLKDVNDGLVDELVDRTLDEDELRRVVSGEEDVGTDMQKQTRASYEALTEFVAK--LERRKDARDGDGYVDFRENMQRLSDGWGGEVWVRNENVQKWLDSHSSTTPSR 2099
+L+ EFDGSLVRHE FVFLDVVWLARILKPLLNHKD+ETFDG V+LGDTGDT +TL DPSDI SW RLK EGVLEPRL +WP+GLSEYVLPT+ASLG TFPLENDP GLVVLLRL +RPE VGKVIDTFC TPAFSASWKIFLGVP GA+EKVLTRCC LG V+TFWR GVLVHG G +DG FAVVLEYS +DNEL A+IFGDISTPA W ALSY +SAV LML+DFPGLR +GSLKCP+HGDAM + R G+K+LEG RC QCS DT GLGAAAIDLVR VDIRLDRDVIF EVKARF DL+ QYS S T S +EG L++K+++VAR +KDGF + RL KVL+STQESL+R++ LQAPNY YPRLV V+E S GT ++A G K VLSK R + ++MTLHFLCPVDMTKVPCGY GEGYRF+ETR WVKK+SPVLQVA+VTA+VA+ AT+GLDV++S+FL+DV DGLV+ELVDRTLDE+ L R VSG++D+G ++Q+ TRASYEAL +F+ K ++R K+ARDGDGY+DFR+ M+R++DG GG VWVRN+NVQKWLDSHS P+R
Sbjct: 206 SLSVREFDGSLVRHEKFVFLDVVWLARILKPLLNHKDQETFDGRVNLGDTGDTPITLDDPSDIKSWDRLKKEGVLEPRLAYAMWPDGLSEYVLPTLASLGFTFPLENDPDEGLVVLLRLTPNRPESVGKVIDTFCSGLTPAFSASWKIFLGVPPGAVEKVLTRCCGLGVVRTFWRYGVLVHGSFGAQDGRRTFAVVLEYSSTDNELTAKIFGDISTPAAWVALSYVMSAVKLMLMDFPGLRWKGSLKCPEHGDAMLFVDKARRGGDKLLEGSRCPQCSVDTGGLGAAAIDLVRFVDIRLDRDVIFKEVKARFDDLDSQYSLSCPTDPSQEEGELIRKIDDVARAVRSVKKEMKDGFIMISERLDKVLESTQESLMRIRNLQAPNYRYPRLVVVKEVGSDGTASKAHGKKSVLSKLRRLGKKDMTLHFLCPVDMTKVPCGYGGEGYRFQETRGWVKKISPVLQVAVVTARVALNATTGLDVNISNFLQDVKDGLVNELVDRTLDEEALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNDNVQKWLDSHSIAAPTR 797
BLAST of mRNA_Ecto-sp13_S_contig12652.2196.1 vs. uniprot
Match: D7FUC3_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI) HSP 1 Score: 842 bits (2175), Expect = 2.230e-288 Identity = 449/687 (65.36%), Postives = 501/687 (72.93%), Query Frame = 3
Query: 300 LRLVDRPTRSHIRI------LYQTLTCTEFDGSLVRHETFVFLDVVWLARILKPLLNHKDEETFDGLVHLGDTGDTRVTLKDPSDIASWGRLKNEGVLEPRLVRKLWPNGLSEYVLPTIASLGLTFPLENDPAGGLVVLLRLEHDRPELVGKVIDTFCLNQTPAFSASWKIFLGVPAGAIEKVLTRCCSLGGVQTFWRSGVLVHGGLGDEDGHEIFAVVLEYSPSDNELAAQIFGDISTPAPWAALSYTVSAVSLMLLDFPGLRSRGSLKCPQHGDAMPLANMVTRTGEKILEGGRCRQCSPDTRGLGAAAIDLVRMVDIRLDRDVIFSEVKARFVDLEGQYSFSSSTASSNDEGVLVQKMEEVARTLKDGFDDLKG-------------------------------------------------------------------------------RLSKVLDSTQESLVRLKTLQAPNYPYPRLVAVEEFASGGTLTRARGMKRVLSKPRGVSTREMTLHFLCPVDMTKVPCGYDGEGYRFRETRRWVKKLSPVLQVAMVTAKVAIKATSGLDVDLSDFLKDVNDGLVDELVDRTLDEDELRRVVSGEEDVGTDMQKQTRASYEALTEFVAKLE--RRKDARDGDGYVDFRENMQRLSDGWGGEVWVRNENVQKWLDSHSSTTPSR 2099
L VD R I + L L+ EFDGSLVRHETFVFLDVVWLARILKPLLNHKDEE+FDGLV+LGDTGDTRVTL+DP DI SW RLKNEGV+EPRL LWP+GLSE+VLPT+ASLGLTFPLENDPA GLVVLLR + D PE VGKVIDTFC PAFSASWKIFLGVP GAIEKVLTRCC+LGGV+TFWRS V VHGG G + GHE+FAVVLEYS ++NEL A+IFGDISTP PW ALSY +SAVSLM+ DFPGLRSRGSLKCPQHGDAM LA V R G+K LEG RC QCS DTRGLGAAAIDLVRMVDIRLDRD IF EVK RFVDLEG+YSFSS SS E +L+QK++ VA + GF+++KG RL V +TQE L+RLK LQAPNY YPRLVAVEE ASG T +RA GMKRVLSK RGV +EM LHFLCPVDMTKVPCGY GEGYRFRETR WVKK+SPVLQVA+VTAKVA+ AT+GL+V++S+FLKDV DGL DELVDR+LDED L RVVSGEEDV DMQ TRASYEAL + + K + R K+ARDGDGY+DFR+ M+R+ DG GG VWVRNENVQ+WLDSHS+T PSR
Sbjct: 559 LETVDELARREITVTSAKNALEGALSIREFDGSLVRHETFVFLDVVWLARILKPLLNHKDEESFDGLVNLGDTGDTRVTLEDPLDIVSWFRLKNEGVIEPRLACALWPDGLSEHVLPTLASLGLTFPLENDPAEGLVVLLRQKPDCPESVGKVIDTFCSEHIPAFSASWKIFLGVPPGAIEKVLTRCCNLGGVRTFWRSAVFVHGGHGYQGGHEMFAVVLEYSSANNELTAKIFGDISTPTPWMALSYVMSAVSLMMRDFPGLRSRGSLKCPQHGDAMLLATKVPRPGDKFLEGSRCPQCSADTRGLGAAAIDLVRMVDIRLDRDEIFHEVKERFVDLEGRYSFSSPAGSSKGENLLIQKIDGVAIAVHGGFNEMKGEANGIRAGLGDVKGXIRGGFHEMXXXXXXXXXXXXXXXEDTKAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGRLENVFKNTQEILMRLKNLQAPNYLYPRLVAVEEVASGSTPSRAHGMKRVLSKLRGVGKKEMVLHFLCPVDMTKVPCGYGGEGYRFRETRGWVKKISPVLQVAVVTAKVALNATAGLNVNISEFLKDVKDGLADELVDRSLDEDALLRVVSGEEDVDADMQNDTRASYEALKKLMDKEQVGRLKNARDGDGYIDFRDKMKRVPDGRGGMVWVRNENVQRWLDSHSNTAPSR 1245
BLAST of mRNA_Ecto-sp13_S_contig12652.2196.1 vs. uniprot
Match: A0A6H5K1K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE) HSP 1 Score: 821 bits (2121), Expect = 3.930e-284 Identity = 415/620 (66.94%), Postives = 490/620 (79.03%), Query Frame = 3
Query: 354 LTCTEFDGSLVRHETFVFLDVVWLARILKPLLNHKDEETFDGLVHLGDTGDTRVTLKDPSDIASWGRLKNEGVLEPRLVRKLWPNGLSEYVLPTIASLGLTFPLENDPAGGLVVLLRLEHDRPELVGKVIDTFCLNQTPAFSASWKIFLGVPAGAIEKVLTRCCSLGGVQTFWRSGVLVHGGLGDEDGHEIFAVVLEYSPSDNELAAQIFGDISTPAPWAALSYTVSAVSLMLLDFPGLRSRGSLKCPQHGDAMPLANMVTRTGEKILEGGRCRQCSPDTRGLGAAAIDLVRMVDIRLDRDVIFSEVKARFVDLEGQYSFSSSTASSNDEGVLVQKMEEVARTLKDGFDDLKGRLS------------------------------------KVLDSTQESLVRLKTLQAPNYPYPRLVAVEEFASGGTLTRARGMKRVLSKPRGVSTREMTLHFLCPVDMTKVPCGYDGEGYRFRETRRWVKKLSPVLQVAMVTAKVAIKATSGLDVDLSDFLKDVNDGLVDELVDRTLDEDELRRVVSGEEDVGTDMQKQTRASYEALTEFVAK--LERRKDARDGDGYVDFRENMQRLSDGWGGEVWVRNENVQKWLDSHSSTTPSR 2099
L+ EFDGSLVR E FVFLDVVWLARILKPLLNHKD+ETFDG V+LGDTGDT +TL DPSDI SW RLK EGVLEP+L +WP+GLSEYVLPT+ASLGLTFPLENDP GLVVLLRL+ +RPE VGKVIDTFC TPAFSASWKIFLGVP GA+EKVLTRCC LGGV+TFWR GVLVHG LG +DG FAVVLEYS +DNEL A+IFGDISTPA W ALSY +SAV LML+DFPGLR +GSLKCPQHGDAM +M R G+K+LEG RC QCS DT GLGAAAIDLVR VDIRLDRDVIF++VKARF DL+ QYS S T S +EG L++K+++VA +K GF +++G +S KVL+ST+ESL+R++ LQAPNY YPRLV V+E + GT ++A G K VLSK R + ++MTLHFLCPVDMTKVPCGY GEGYRF+ETR WVKK+SPVLQVA+VTAKVA+ AT+GLDVD+S+FLKDV DGLV+ELVDRT+DE+ L R VSG++D+G ++Q+ TRASYEAL +F+ K ++R K+ARDGDGY+DFR+ M+R++DG GG VWVRN+NVQKWLDSHS P+R
Sbjct: 346 LSVREFDGSLVRRENFVFLDVVWLARILKPLLNHKDQETFDGRVNLGDTGDTPITLDDPSDITSWDRLKKEGVLEPKLAYAMWPDGLSEYVLPTLASLGLTFPLENDPDEGLVVLLRLKPNRPESVGKVIDTFCSGLTPAFSASWKIFLGVPPGAVEKVLTRCCGLGGVRTFWRYGVLVHGSLGVQDGRRTFAVVLEYSSTDNELTAKIFGDISTPAAWVALSYVMSAVRLMLVDFPGLRWKGSLKCPQHGDAMLFVDMARRGGDKLLEGSRCPQCSVDTGGLGAAAIDLVRFVDIRLDRDVIFNDVKARFDDLDSQYSLSCPTDPSQEEGELIRKIDDVATAVKGGFAEVEGGVSNLKGEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVLESTKESLMRIRNLQAPNYRYPRLVVVKEVGADGTASKAHGKKSVLSKLRRLGKKDMTLHFLCPVDMTKVPCGYGGEGYRFQETRGWVKKISPVLQVAVVTAKVALNATTGLDVDISNFLKDVKDGLVNELVDRTIDEEALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNDNVQKWLDSHSIAAPTR 965
BLAST of mRNA_Ecto-sp13_S_contig12652.2196.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI) HSP 1 Score: 800 bits (2066), Expect = 6.970e-275 Identity = 427/653 (65.39%), Postives = 483/653 (73.97%), Query Frame = 3
Query: 183 VLDR*AINEGRVLEDWFGPVSRWKSGNAPSQGHRW--FVNSLRLVDRPTRSHIRILYQTLTCTEFDGSLVRHETFVFLDVVWLARILKPLLNHKDEETFDGLVHLGDTGDTRVTLKDPSDIASWGRLKNEGVLEPRLVRKLWPNGLSEYVLPTIASLGLTFPLENDPAGGLVVLLRLEHDRPELVGKVIDTFCLNQTPAFSASWKIFLGVPAGAIEKVLTRCCSLGGVQTFWRSGVLVHGGLGDEDGHEIFAVVLEYSPSDNELAAQIFGDISTPAPWAALSYTVSAVSLMLLDFPGLRSRGSLKCPQHGDAMPLANMVTRTGEKILEGGRCRQCSPDTRGLGAAAIDLVRMVDIRLDRDVIFSEVKARFVDLEGQYSFSSSTASSNDEGVLVQKMEEVARTLKDGFDDLK----------GRLSKVLDSTQESLVRLKTLQAPNYPYPRLVAVEEFASGGTLTRARGMKRVLSKPRGVSTREMTLHFLCPVDMTKVPCGYDGEGYRFRETRRWVKKLSPVLQVAMVTAKVAIKATSGLDVDLSDFLKDVNDGLVDELVDRTLDEDELRRVVSGEEDVGTDMQKQTRASYEALTEFVAKLERR--KDARDGDGYVDFRENMQRLSDGWGGEVWVRNENVQKWLDSHSSTTPSR 2099
VL + +E R E G + +++ G W V+ L + L L+ EFDGSLVRHE FVFLDVVWLARILKPLLNHKD+ TFDG V+LGDTGD R+TL D SDIASWGRLKNEGVLEPRL +WP+GLSEYVLPT+ASLGLTFPLE DP GLVVLLRLE +RP VG+ IDTFC TPAFSASW+IFLGVP GAIEKVLTRCC LG VQTFWR GVLVHGGLGD DG IFAVV EYS ++NEL AQIFGDIST APW ALSY SAVSLML+DFPGLR GSLKCPQHG MP A V G+K LE RC +CSP TRGLGAAAIDL+RMVDIRLDR VI EVKARF LE QY F+ SS DE V+KM+EV GRL KVL+STQESL RLK LQAPNY YPRLV V+E S GT ++A G K +LSK RG+ ++M LHFLCPVDMT VPCGY GEGY+F+ETR WVK++SP LQV +VTAKVA+ A +GL+VD+SDFLKDV DGLV+ELVDRTLDED L R VSG++ VG D+Q+ TRASYEAL F+ ERR K+ARDGDGY++FRE M+RL DG GGEVWVRNENV+KWL S+SS PSR
Sbjct: 382 VLLKSPDSERRPTETGVGKTNVYQAIKVEELGTNWRETVDELGKRGIVVTNAENALEGALSIREFDGSLVRHEKFVFLDVVWLARILKPLLNHKDQRTFDGRVNLGDTGDARITLDDSSDIASWGRLKNEGVLEPRLAYAMWPDGLSEYVLPTLASLGLTFPLEGDPDNGLVVLLRLEPNRPASVGEAIDTFCSKYTPAFSASWEIFLGVPPGAIEKVLTRCCGLGDVQTFWRYGVLVHGGLGDLDGRGIFAVVTEYSSTNNELTAQIFGDISTSAPWVALSYVTSAVSLMLMDFPGLRWNGSLKCPQHGYEMPFATKVNCAGDKFLER-RCPRCSPQTRGLGAAAIDLIRMVDIRLDRGVIDREVKARFDVLESQY-FTCPAGSSTDEDEFVRKMDEVKAEXXXXXXXXXXXXXXXXXXAGRLDKVLESTQESLARLKNLQAPNYHYPRLVVVKEVGSHGTSSKAHGKKSMLSKLRGLGKKDMRLHFLCPVDMTTVPCGYGGEGYQFQETRAWVKRVSPALQVTVVTAKVALNAVTGLNVDISDFLKDVKDGLVEELVDRTLDEDALLRAVSGDDTVGADLQRDTRASYEALKVFMENEERRRRKNARDGDGYIEFREEMKRLPDGRGGEVWVRNENVRKWLASNSSPAPSR 1032
BLAST of mRNA_Ecto-sp13_S_contig12652.2196.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI) HSP 1 Score: 806 bits (2081), Expect = 1.680e-273 Identity = 421/613 (68.68%), Postives = 483/613 (78.79%), Query Frame = 3
Query: 276 GHRW--FVNSLRLVDRPTRSHIRILYQTLTCTEFDGSLVRHETFVFLDVVWLARILKPLLNHKDEETFDGLVHLGDTGDTRVTLKDPSDIASWGRLKNEGVLEPRLVRKLWPNGLSEYVLPTIASLGLTFPLENDPAGGLVVLLRLEHDRPELVGKVIDTFCLNQTPAFSASWKIFLGVPAGAIEKVLTRCCSLGGVQTFWRSGVLVHGGLGDEDGHEIFAVVLEYSPSDNELAAQIFGDISTPAPWAALSYTVSAVSLMLLDFPGLRSRGSLKCPQHGDAMPLANMVTRTGEKILEGGRCRQCSPDTRGLGAAAIDLVRMVDIRLDRDVIFSEVKARFVDLEGQYSFSSSTASSNDEGVLVQKMEEVARTLKDGFDDLKGRLSKVLDSTQESLVRLKTLQAPNYPYPRLVAVEEFASGGTLTRARGMKRVL-SKPRGVSTREMTLHFLCPVDMTKVPCGYDGEGYRFRETRRWVKKLSPVLQVAMVTAKVAIKATSGLDVDLSDFLKDVNDGLVDELVDRTLDEDELRRVVSGEEDVGTDMQKQTRASYEALTEFVAKLERR--KDARDGDGYVDFRENMQRLSDGWGGEVWVRNENVQKWLDSHSSTTPSR 2099
G +W V+ L + + L L+ EFDGSLVRHE FVFLDVVWL+RILKPLLNHKD+ TFDG V LGDTGDTR+TL D SDI SW RLK+EGVLEPRL +WP+GLSEYVLPT+ S+GLTFPLE DP GLVVLLRLE RPE VG+VIDTFC TPAFSASW+IFLGVP GAIEKVLTRCC LG VQTFWR GVLVHGGLGD DG IFAVV+EYS +DNEL AQIFGDISTPAPW ALSY +SAVSLML+DFPGLR +G LKCPQHG+ MP AN V R G+K LE +C +CSP+TRGLGAAAIDLV +VDIRLDRDVIF EVKARFV LE QY FS T SS E L++K+E++A +K + GRL VL+STQESL+RLK LQAPNY YPRLV V++ +GG +RA G KR L SK RG+ ++MTLHFLCPVDMT+VPCG GEGYRFRE R WVKK+SPVLQV +VTAKVA+ A +GL+VD+S FLKDV DGL+ E+VDRTLDED L R VSG+ + TD+Q+ TRASYEAL F+ ERR K+ARDGDGY+DFR+ M+ L DG GGEVW+RNENVQKWLDS+SS PSR
Sbjct: 697 GTKWQETVDELERRGITVTNMMNALEGALSIREFDGSLVRHEKFVFLDVVWLSRILKPLLNHKDQRTFDGRVKLGDTGDTRITLHDQSDIDSWDRLKSEGVLEPRLANAMWPHGLSEYVLPTLVSVGLTFPLEGDPDAGLVVLLRLEPHRPESVGEVIDTFCSKHTPAFSASWEIFLGVPPGAIEKVLTRCCGLGDVQTFWRYGVLVHGGLGDLDGRGIFAVVVEYSSTDNELTAQIFGDISTPAPWVALSYVMSAVSLMLVDFPGLRWKGCLKCPQHGNEMPFANKVNRAGDKFLER-KCPRCSPETRGLGAAAIDLVCLVDIRLDRDVIFREVKARFVVLESQY-FSCPTGSSKTEDELLRKIEDMAIAMK----VMTGRLDTVLESTQESLMRLKNLQAPNYLYPRLVVVKKDGNGGRSSRATGWKRCLPSKLRGMGKKDMTLHFLCPVDMTEVPCGPGGEGYRFREMRDWVKKISPVLQVTLVTAKVALNAVTGLNVDVSGFLKDVQDGLLGEIVDRTLDEDALLRAVSGDGAIDTDLQRDTRASYEALKAFMENEERRRRKNARDGDGYIDFRDKMKLLPDGRGGEVWIRNENVQKWLDSNSSPAPSR 1303
BLAST of mRNA_Ecto-sp13_S_contig12652.2196.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI) HSP 1 Score: 792 bits (2045), Expect = 5.460e-268 Identity = 413/654 (63.15%), Postives = 478/654 (73.09%), Query Frame = 3
Query: 354 LTCTEFDGSLVRHETFVFLDVVWLARILKPLLNHKDEETFDGLVHLGDTGDTRVTLKDPSDIASWGRLKNEGVLEPRLVRKLWPNGLSEYVLPTIASLGLTFPLENDPAGGLVVLLRLEHDRPELVGKVIDTFCLNQTPAFSASWKIFLGVPAGAIEKVLTRCCSLGGVQTFWRSGVLVHGGLGDEDGHEIFAVVLEYSPSDNELAAQIFGDISTPAPWAALSYTVSAVSLMLLDFPGLRSRGSLKCPQHGDAMPLANMVTRTGEKILEGGRCRQCSPDTRGLGAAAIDLVRMVDIRLDRDVIFSEVKARFVDLEGQYSFSSSTAS-SNDEGVLVQKMEEVARTLKDGFDDLK---------------------------------------------------------------------GRLSKVLDSTQESLVRLKTLQAPNYPYPRLVAVEEFASGGTLTRARGMKRVLSKPRGVSTREMTLHFLCPVDMTKVPCGYDGEGYRFRETRRWVKKLSPVLQVAMVTAKVAIKATSGLDVDLSDFLKDVNDGLVDELVDRTLDEDELRRVVSGEEDVGTDMQKQTRASYEALTEFVAK--LERRKDARDGDGYVDFRENMQRLSDGWGGEVWVRNENVQKWLDSHSSTTPSR 2099
L+ EFDGSLV HE FVFLDVVWLARILKPLLNHKD+E FDG V+LGDTGDTR+TL D +DIASW RLK EGVLEPRL +WPNGLSEYVLPT+ASLGL FPLENDPA GLVVLLRL+ RPE VGKVIDTFC TPAF ASWKIFLGVP GAIEKVLTRCC LGGVQTFWR GVLVHGGLG +D FAVV+EYS +DNEL AQIFGD+STP PW A SY +SAVSLML+DFPGL +G L+CPQHGD M N TR G+K LEG RC QCS DT GLGAAAIDL+R VDIRLDRDVIF+EVKARF DLE QYSF+ T S +E L++K++ +A ++ F+++K GRL KVL+STQESL+RL+ LQAPNY YPRLV V+E S GT ++ARG K +LSK GV ++MTL FLCPVDMT+VPCGY GEGYRF+ETR WVKK+SPVLQVA+VTAKVA+ AT+GL VD+SDFLKDV DGLV+ELVDRTLD++ L R V G++++G D+Q+ TRASYEAL +F+ K +ER K+ RDGDGY+DFR+ M+R+ DG GG VWVRNENVQKWLDS S P+R
Sbjct: 659 LSIREFDGSLVPHEKFVFLDVVWLARILKPLLNHKDQEMFDGRVNLGDTGDTRITLDDSADIASWDRLKKEGVLEPRLAYAIWPNGLSEYVLPTLASLGLIFPLENDPAEGLVVLLRLKPHRPESVGKVIDTFCSGLTPAFRASWKIFLGVPPGAIEKVLTRCCGLGGVQTFWRYGVLVHGGLGVQDERRTFAVVVEYSSTDNELIAQIFGDVSTPGPWGATSYVMSAVSLMLVDFPGLGWKGYLECPQHGDGMLFVNKATRDGDKFLEGSRCPQCSADTGGLGAAAIDLLRFVDIRLDRDVIFNEVKARFNDLESQYSFTCPTHDRSKEESELIRKIDGMATAVQGAFNEVKVEXXXXXXXXXXXXXXXFAEVEGGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLGMISGRLDKVLESTQESLMRLRDLQAPNYRYPRLVVVKEVGSDGTASKARGRKSMLSKLCGVGKKDMTLQFLCPVDMTQVPCGYGGEGYRFKETRSWVKKISPVLQVAVVTAKVALNATTGLHVDISDFLKDVKDGLVEELVDRTLDDEALLRAVLGDDNIGADLQRDTRASYEALKKFMDKEQIERVKNTRDGDGYIDFRDEMKRVPDGRGGMVWVRNENVQKWLDSRSIAAPTR 1312
BLAST of mRNA_Ecto-sp13_S_contig12652.2196.1 vs. uniprot
Match: D7G431_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI) HSP 1 Score: 771 bits (1992), Expect = 6.260e-263 Identity = 402/631 (63.71%), Postives = 475/631 (75.28%), Query Frame = 3
Query: 354 LTCTEFDGSLVRHETFVFLDVVWLARILKPLLNHKDEETFDGLVHLGDTGDTRVTLKDPSDIASWGRLKNEGVLEPRLVRKLWPNGLSEYVLPTIASLGLTFPLENDPAGGLVVLLRLEHDRPELVGKVIDTFCLNQTPAFSASWKIFLGVPAGAIEKVLTRCCSLGGVQTFWRSGVLVHGGLGDEDGHEIFAVVLEYSPSDNELAAQIFGDISTPAPWAALSYTVSAVSLMLLDFPGLRSRGSLKCPQHGDAMPLANMVTRTGEKILEGGRCRQCSPDTRGLGAAAIDLVRMVDIRLDRDVIFSEVKARFVDLEGQYSFSSSTASSNDEGVLVQKMEEVARTLKDGFDD--------------LKGRLSK------------------------------------VLDSTQESLVRLKTLQAPNYPYPRLVAVEEFASGGTLTRARGMKRVLSKPRGVSTREMTLHFLCPVDMTKVPCGYDGEGYRFRETRRWVKKLSPVLQVAMVTAKVAIKATSGLDVDLSDFLKDVNDGLVDELVDRTLDEDELRRVVSGEEDVGTDMQKQTRASYEALTEFVAK--LERRKDARDGDGYVDFRENMQRLSDGWGGEVWVRNENVQKWLDSHSSTT 2090
L+ EFDGSLVRHETFVFLDV+WLARILKPLLNHKD+ETFDG V+LGDTGD R+TL DP IASWGRLKNEGVLEPRL +WP GLSEYVLPT+ASLGLTFPLE D G VVLLRL+ +RP+ VG+VIDTFC TPA SASW IFLGVP GAIEKVLTRCC LG VQTFWR GVLVHGGLGD G IFAVVLEYS +D++L QIFGDI TPAPW ALSY +SAVSLML+DFPGLR G+LKCPQHGDAM +AN VT+ GE L+ RC +CS +T+GLGAAAIDL+RMVDIR+DR IF EV RF L+G YSF SS + L + +E + +T+K G DD ++G + + VL+STQESL+RLK LQAPNY YPRLV V+E SGGT ++A G K +L+K RG++ ++MTLHFLCPVDMT+VPCGY GEG+RF++TR WV+K+SPVLQVA+VTAKVA+ AT+GL+VD SDFLKDV DGLV ELVDRTLDE LRRVV+GEE +G DMQ+ TRASYEAL +F+ K ++R KDA+DGDGYV FR+ M+R++DG GG VWVRN+NVQKWL+S ++ T
Sbjct: 461 LSIREFDGSLVRHETFVFLDVLWLARILKPLLNHKDQETFDGRVNLGDTGDARITLDDPLYIASWGRLKNEGVLEPRLAYAMWPGGLSEYVLPTLASLGLTFPLEGDLDEGQVVLLRLKPERPDSVGEVIDTFCSRHTPALSASWNIFLGVPPGAIEKVLTRCCGLGAVQTFWRYGVLVHGGLGDLGGRGIFAVVLEYSSTDHKLNGQIFGDIGTPAPWVALSYVMSAVSLMLVDFPGLRWGGALKCPQHGDAMLMANKVTQAGETFLKR-RCPRCSTETKGLGAAAIDLLRMVDIRMDRGEIFDEVMERFDALKGHYSFDGQAGSSKKKDGLTRMVESIIKTMKGGVDDXXXXXXXXXXXXXXVQGEVRRGFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLESTQESLMRLKNLQAPNYLYPRLVVVKEVGSGGTSSKAHGKKSMLTKLRGLAKKDMTLHFLCPVDMTRVPCGYGGEGHRFKQTRGWVRKISPVLQVAVVTAKVALNATTGLNVDPSDFLKDVRDGLVGELVDRTLDEHALRRVVTGEEAIGADMQRGTRASYEALKKFMDKEEIKRCKDAKDGDGYVHFRDEMKRVADGKGGMVWVRNKNVQKWLESRAAPT 1090
BLAST of mRNA_Ecto-sp13_S_contig12652.2196.1 vs. uniprot
Match: A0A6H5JYD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD1_9PHAE) HSP 1 Score: 756 bits (1952), Expect = 6.260e-262 Identity = 416/729 (57.06%), Postives = 496/729 (68.04%), Query Frame = 3
Query: 186 LDR*AINEGRVLEDWFGPVSRWKSGNAPSQ------------GHRWFVNSLRLVDRP--TRSHIRILYQTLTCTEFDGSLVRHETFVFLDVVWLARILKPLLNHKDEETFDGLVHLGDTGDTRVTLKDPSDIASWGRLKNEGVLEPRLVRKLWPNGLSEYVLPTIASLGLTFPLENDPAGGLVVLLRLEHDRPELVGKVIDTFCLNQTPAFSASWKIFLGVPAGAIEKVLTRCCSLGGVQTFWRSGVLVHGGLGD-EDGHEIFAVVLEYSPSDNELAAQIFGDISTPAPWAALSYTVSAVSLMLLDFPGLRSRGSLKCPQHGDAMPLANMVTRTGEK----------------------------ILEGGRCRQCSPDTRGLGAAAIDLVRMVDIRLDRDVIFSEVKARFVDLEGQYSFSSSTAS-----------------SNDEGVLVQKMEEVA-----------------------------RTLKDGFDDLKGRLSKVLDSTQESLVRLKTLQAPNYPYPRLVAVEEFASGGTLTRARGMKRVLSKPRGVSTREMTLHFLCPVDMTKVPCGYDGEGYRFRETRRWVKKLSPVLQVAMVTAKVAIKATSGLDVDLSDFLKDVNDGLVDELVDRTLDEDELRRVVSGEEDVGTDMQKQTRASYEALTEFV--AKLERRKDARDGDGYVDFRENMQRLSDGWGGEVWVRNENVQKWLDSHSSTTPSR 2099
L R + E ++ GP R + APS+ G +W L L R + L L+ EFDGSL+RHETFVFLDVVWL+RILKPLLNHKD+ETF+G V LGD GD+ +TL D DIASW RLK+EG+LEPRL +WP GLSEYVLPT+ SLGLTFPLEND AGGLVVLLRL+ RP VGKVIDTFC P FSASWKIFLGVPAGA+EKVLTRCCS+GGVQTFWR GVLVHG GD DG FAVVLEYS +NEL AQI+GD S PAPWAALSY +S+V +LL+FPGLR RG LKCPQHGD M L + V R +LE CRQCSP RG GAAAI L+RMVDIRL+RDV+F EVKARF LE ++ FS T S S ++G L++KM++VA + +KDGF + GRL KVL+STQESL+R++ LQAPNY YPRLV V+E S GT ++A G K +LSK R + ++MTLHFLCPVDMTKVPCGY GEGYRF+ETR WVKK+SPVLQVA+VTAKVA+ AT+GLDVD+S+FLKDV DGLV+ELVDRTLDE L R VSG++D+G ++Q TRASYEAL +F+ +++R K+ARDGDGY+D R+ M+R++DG GG VWVRN+NVQKWLDSHS P+R
Sbjct: 17 LHRDPVEE--IVRKLAGPDEREAARTAPSKVEMYRGITVEELGAKWLEAVLELEKREITVANAEHALEGALSIREFDGSLIRHETFVFLDVVWLSRILKPLLNHKDQETFEGFVKLGDNGDSCITLHDQVDIASWRRLKSEGILEPRLAHVIWPAGLSEYVLPTLVSLGLTFPLENDDAGGLVVLLRLKPGRPARVGKVIDTFCSQNIPVFSASWKIFLGVPAGAMEKVLTRCCSIGGVQTFWRFGVLVHGSFGDARDGSGDFAVVLEYSSINNELTAQIYGDKSQPAPWAALSYVISSVRFVLLEFPGLRWRGLLKCPQHGDPMLLDSEVYRRSHSGTLPVLKFPLEALNFEIYDRTILQGDQLLLESAGCRQCSPKIRGQGAAAIKLLRMVDIRLERDVVFDEVKARF--LECEHIFSRPTLSVAVLCLSSRHVCTKQDPSQEQGELIRKMDDVATAVEVGISNLEGVVKGGFHDTNTELRGVKKEVKDGFSMISGRLDKVLESTQESLMRIRHLQAPNYRYPRLVVVKEVGSDGTASKAHGKKSLLSKLRLLGKKDMTLHFLCPVDMTKVPCGYGGEGYRFQETRGWVKKISPVLQVAVVTAKVALNATTGLDVDISNFLKDVKDGLVNELVDRTLDE-ALLRAVSGDDDIGAELQTDTRASYEALKKFMDQEQVDRVKNARDGDGYIDLRDEMKRVTDGRGGMVWVRNDNVQKWLDSHSIAAPTR 740 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12652.2196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12652.2196.1 >prot_Ecto-sp13_S_contig12652.2196.1 ID=prot_Ecto-sp13_S_contig12652.2196.1|Name=mRNA_Ecto-sp13_S_contig12652.2196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=352bp MLLDFPGLRSRGSLKCPQHGDAMPLANMVTRTGEKILEGGRCRQCSPDTRback to top mRNA from alignment at Ecto-sp13_S_contig12652:761..4980- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12652.2196.1 ID=mRNA_Ecto-sp13_S_contig12652.2196.1|Name=mRNA_Ecto-sp13_S_contig12652.2196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4220bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12652:761..4980- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12652:761..4980- >mRNA_Ecto-sp13_S_contig12652.2196.1 ID=mRNA_Ecto-sp13_S_contig12652.2196.1|Name=mRNA_Ecto-sp13_S_contig12652.2196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1056bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12652:761..4980- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |