mRNA_Ecto-sp13_S_contig12650.2195.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12650.2195.1
Unique NamemRNA_Ecto-sp13_S_contig12650.2195.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12650.2195.1 vs. uniprot
Match: A0A6H5L1D6_9PHAE (TPT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1D6_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 5.100e-61
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1
Query:  178 YNEVSFYALNIIHPVTHALGNTLKRVVMIIVSVLVLNHRFTPLGLAGCTTAIGGVMAYSLTKARLEQAGVVVPVGKVAAVKVQLENEXXXXXXXXXXXXVAVAVVAAAKNKKEGATGEEDGGTAAE 555
            YNEVSFYALNIIHPVTHALGNTLKRVVMIIVSVLVLNHRFTPLGLAGCTTAIGGVMAYSLTKARLEQAGVVVPVGKVAAVKVQLENEXXXXXXXXXXXXVAVAVVAAAKNKKEGATGEEDGGTAAE
Sbjct:  389 YNEVSFYALNIIHPVTHALGNTLKRVVMIIVSVLVLNHRFTPLGLAGCTTAIGGVMAYSLTKARLEQAGVVVPVGKVAAVKVQLENEXXXXXXXXXXXXVAVAVVAAAKNKKEGATGEEDGGTAAE 514          
BLAST of mRNA_Ecto-sp13_S_contig12650.2195.1 vs. uniprot
Match: D8LKK2_ECTSI (Triosephosphate/phosphate translocator n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKK2_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 8.130e-60
Identity = 120/126 (95.24%), Postives = 120/126 (95.24%), Query Frame = 1
Query:  178 YNEVSFYALNIIHPVTHALGNTLKRVVMIIVSVLVLNHRFTPLGLAGCTTAIGGVMAYSLTKARLEQAGVVVPVGKVAAVKVQLENEXXXXXXXXXXXXVAVAVVAAAKNKKEGATGEEDGGTAAE 555
            YNEVSFYALNIIHPVTHALGNTLKRVVMIIVSVLVLNHRFTPLGLAGCTTAIGGVMAYSLTKARLEQAGVVVPVGKVAAVK QLENEXXXXXXXXXXX VA AV AAAKNKKEGATGEEDG TA E
Sbjct:  194 YNEVSFYALNIIHPVTHALGNTLKRVVMIIVSVLVLNHRFTPLGLAGCTTAIGGVMAYSLTKARLEQAGVVVPVGKVAAVKAQLENEXXXXXXXXXXXEVAAAVAAAAKNKKEGATGEEDGSTATE 319          
BLAST of mRNA_Ecto-sp13_S_contig12650.2195.1 vs. uniprot
Match: A0A835YPU6_9STRA (Triosephosphate/phosphate translocator n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU6_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.870e-19
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1
Query:  178 YNEVSFYALNIIHPVTHALGNTLKRVVMIIVSVLVLNHRFTPLGLAGCTTAIGGVMAYSLTKARLEQ 378
            YNEV+FY LN IHP+TH +GNT+KRVVMI VSV+  +HRFTPLG+ G  TAIGGV+ YS+ K   ++
Sbjct:  203 YNEVAFYCLNAIHPLTHGIGNTIKRVVMIAVSVIAFHHRFTPLGVVGSATAIGGVLLYSIVKGHYDE 269          
BLAST of mRNA_Ecto-sp13_S_contig12650.2195.1 vs. uniprot
Match: A0A835ZDI5_9STRA (Triose-phosphate transporter family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDI5_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.110e-14
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 1
Query:  178 YNEVSFYALNIIHPVTHALGNTLKRVVMIIVSVLVLNHRFTPLGLAGCTTAIGGVMAYSLTK 363
            YNEV+FY LN I   THA+GNT+KRVV++ VSVLV  H+ TPLG  G   AIGGV+ YSLTK
Sbjct:  254 YNEVAFYCLNSIDATTHAVGNTVKRVVLLGVSVLVFGHQLTPLGATGSAVAIGGVLVYSLTK 315          
BLAST of mRNA_Ecto-sp13_S_contig12650.2195.1 vs. uniprot
Match: A0A6H5KYA6_9PHAE (TPT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYA6_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 3.550e-14
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  178 YNEVSFYALNIIHPVTHALGNTLKRVVMIIVSVLVLNHRFTPLGLAGCTTAIGGVMAYSLTK 363
            YNEV+FY L+ IHPVTHA+ NT+KRV +I VS+LV  H+ TPLG  G   AI GV+ YSL K
Sbjct:  342 YNEVAFYCLDAIHPVTHAVANTVKRVFLIAVSILVFGHKLTPLGSIGSAVAIAGVLLYSLAK 403          
BLAST of mRNA_Ecto-sp13_S_contig12650.2195.1 vs. uniprot
Match: B5AJS9_GALSU (Sugar-phosphate:phosphate translocator, DMT family n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=B5AJS9_GALSU)

HSP 1 Score: 76.3 bits (186), Expect = 5.850e-13
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 1
Query:  178 YNEVSFYALNIIHPVTHALGNTLKRVVMIIVSVLVLNHRFTPLGLAGCTTAIGGVMAYSLTK 363
            YNEV+FYAL+ +HP+TH++GNT+KRVV+II S+LV  +  TP    G   AI GV+ YSLTK
Sbjct:  338 YNEVAFYALDSVHPITHSVGNTMKRVVIIITSLLVFKNPITPANAIGSAIAISGVLLYSLTK 399          
BLAST of mRNA_Ecto-sp13_S_contig12650.2195.1 vs. uniprot
Match: A0A7S2SP14_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SP14_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.460e-12
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 1
Query:  178 YNEVSFYALNIIHPVTHALGNTLKRVVMIIVSVLVLNHRFTPLGLAGCTTAIGGVMAYSLTK 363
            YNEV+F AL+ + PVTHA+GNT+KRVV+I+ S++V N + TPLG AG   AI G + YSL K
Sbjct:  315 YNEVAFLALDSVAPVTHAVGNTIKRVVIILASIVVFNTQLTPLGAAGSGIAIAGTLMYSLAK 376          
BLAST of mRNA_Ecto-sp13_S_contig12650.2195.1 vs. uniprot
Match: A0A7S3RTE4_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RTE4_9SPIT)

HSP 1 Score: 73.2 bits (178), Expect = 5.090e-12
Identity = 34/68 (50.00%), Postives = 49/68 (72.06%), Query Frame = 1
Query:  178 YNEVSFYALNIIHPVTHALGNTLKRVVMIIVSVLVLNHRFTPLGLAGCTTAIGGVMAYSLTKARLEQA 381
            YNEV+F AL+ + P+TH++ NT+KRV +I+ +VLV  ++ TPLG AG   A+ G   YSL KA+ +QA
Sbjct:  213 YNEVAFIALDKVSPITHSIANTIKRVCIILATVLVFGNKLTPLGAAGSAIAVAGTFVYSLAKAKYKQA 280          
BLAST of mRNA_Ecto-sp13_S_contig12650.2195.1 vs. uniprot
Match: R1E2C9_EMIHU (TPT domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E2C9_EMIHU)

HSP 1 Score: 73.2 bits (178), Expect = 6.370e-12
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 1
Query:  178 YNEVSFYALNIIHPVTHALGNTLKRVVMIIVSVLVLNHRFTPLGLAGCTTAIGGVMAYSLTKAR 369
            YNE +F AL+ +HPVTHA+ NT+KRV +I++S++V  +  TP G  G   AIGGV  YSL KAR
Sbjct:  312 YNECAFLALSSVHPVTHAVANTVKRVAVILISLVVFRNPLTPAGALGSAVAIGGVFLYSLAKAR 375          
BLAST of mRNA_Ecto-sp13_S_contig12650.2195.1 vs. uniprot
Match: A0A7S2QNU4_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2QNU4_9DINO)

HSP 1 Score: 69.3 bits (168), Expect = 8.490e-12
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 1
Query:  178 YNEVSFYALNIIHPVTHALGNTLKRVVMIIVSVLVLNHRFTPLGLAGCTTAIGGVMAYSLTKARLE 375
            YNEV+F AL  + PV+HA+ NT+KRVV+II SV+V     TPLG+AG   AI G + YSL K R +
Sbjct:   73 YNEVAFLALGKLDPVSHAVSNTMKRVVIIITSVIVFRTAVTPLGVAGSGIAIAGTLLYSLAKNRFK 138          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12650.2195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1D6_9PHAE5.100e-61100.00TPT domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LKK2_ECTSI8.130e-6095.24Triosephosphate/phosphate translocator n=1 Tax=Ect... [more]
A0A835YPU6_9STRA1.870e-1962.69Triosephosphate/phosphate translocator n=1 Tax=Tri... [more]
A0A835ZDI5_9STRA1.110e-1464.52Triose-phosphate transporter family-domain-contain... [more]
A0A6H5KYA6_9PHAE3.550e-1461.29TPT domain-containing protein n=2 Tax=Ectocarpus T... [more]
B5AJS9_GALSU5.850e-1358.06Sugar-phosphate:phosphate translocator, DMT family... [more]
A0A7S2SP14_9STRA3.460e-1258.06Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3RTE4_9SPIT5.090e-1250.00Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
R1E2C9_EMIHU6.370e-1254.69TPT domain-containing protein n=1 Tax=Emiliania hu... [more]
A0A7S2QNU4_9DINO8.490e-1254.55Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12650contigEcto-sp13_S_contig12650:1704..2261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score199.5
Seed ortholog evalue1.4e-48
Seed eggNOG ortholog2880.D8LKK2
Preferred nameSLC35E3
Model size559
KEGG koko:K06643,ko:K15285
KEGG Pathwayko01522,ko01524,ko04068,ko04110,ko04115,ko04120,ko04144,ko04151,ko04218,ko04919,ko05165,ko05169,ko05200,ko05202,ko05203,ko05205,ko05206,ko05214,ko05215,ko05218,ko05219,ko05220,map01522,map01524,map04068,map04110,map04115,map04120,map04144,map04151,map04218,map04919,map05165,map05169,map05200,map05202,map05203,map05205,map05206,map05214,map05215,map05218,map05219,map05220
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.carbohydrate transport
EggNOG OGsKOG1441@1,KOG1441@2759
EC2.3.2.27
Cds size558
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko04121,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462675.6477442-CDS-Ecto-sp13_S_contig12650:1703..22611681462675.6477442-CDS-Ecto-sp13_S_contig12650:1703..2261Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12650 1704..2261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12650.2195.1prot_Ecto-sp13_S_contig12650.2195.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12650 1704..2261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12650.2195.1

>prot_Ecto-sp13_S_contig12650.2195.1 ID=prot_Ecto-sp13_S_contig12650.2195.1|Name=mRNA_Ecto-sp13_S_contig12650.2195.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=186bp
RLAAPGDVANEGLNQSEESSPFSPLPLAVPPSTHMSTGVCACTSVCLRVC
AFHEPPPIRYNEVSFYALNIIHPVTHALGNTLKRVVMIIVSVLVLNHRFT
PLGLAGCTTAIGGVMAYSLTKARLEQAGVVVPVGKVAAVKVQLENEAGVS
VPVGKAAEVAVAVVAAAKNKKEGATGEEDGGTAAE*
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mRNA from alignment at Ecto-sp13_S_contig12650:1704..2261+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12650.2195.1 ID=mRNA_Ecto-sp13_S_contig12650.2195.1|Name=mRNA_Ecto-sp13_S_contig12650.2195.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=558bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12650:1704..2261+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTCTCGCTGCTCCAGGGGATGTAGCAAATGAAGGGTTGAATCAGAGCGA GGAATCATCACCCTTTTCCCCCCTCCCTCTTGCCGTCCCGCCGTCCACGC ACATGTCAACCGGTGTGTGTGCATGTACATCCGTGTGTTTGCGCGTGTGT GCTTTCCATGAACCGCCACCCATCAGGTACAACGAGGTGTCGTTCTACGC GCTCAACATTATCCACCCGGTGACGCACGCTCTCGGCAACACCCTGAAGC GCGTAGTGATGATCATCGTCAGCGTCCTGGTCCTGAACCACAGGTTCACC CCCCTGGGGCTGGCCGGCTGCACGACCGCCATCGGCGGCGTGATGGCGTA CTCGCTCACCAAGGCCAGGCTCGAGCAGGCCGGAGTGGTCGTTCCCGTGG GAAAGGTGGCCGCCGTTAAGGTTCAGCTCGAGAACGAGGCCGGGGTCTCG GTGCCGGTGGGCAAGGCCGCCGAGGTGGCGGTGGCGGTGGTGGCGGCGGC GAAGAACAAAAAGGAGGGGGCGACGGGGGAGGAGGATGGGGGCACGGCGG CGGAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12650:1704..2261+

>mRNA_Ecto-sp13_S_contig12650.2195.1 ID=mRNA_Ecto-sp13_S_contig12650.2195.1|Name=mRNA_Ecto-sp13_S_contig12650.2195.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=558bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12650:1704..2261+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTCTCGCTGCTCCAGGGGATGTAGCAAATGAAGGGTTGAATCAGAGCGA
GGAATCATCACCCTTTTCCCCCCTCCCTCTTGCCGTCCCGCCGTCCACGC
ACATGTCAACCGGTGTGTGTGCATGTACATCCGTGTGTTTGCGCGTGTGT
GCTTTCCATGAACCGCCACCCATCAGGTACAACGAGGTGTCGTTCTACGC
GCTCAACATTATCCACCCGGTGACGCACGCTCTCGGCAACACCCTGAAGC
GCGTAGTGATGATCATCGTCAGCGTCCTGGTCCTGAACCACAGGTTCACC
CCCCTGGGGCTGGCCGGCTGCACGACCGCCATCGGCGGCGTGATGGCGTA
CTCGCTCACCAAGGCCAGGCTCGAGCAGGCCGGAGTGGTCGTTCCCGTGG
GAAAGGTGGCCGCCGTTAAGGTTCAGCTCGAGAACGAGGCCGGGGTCTCG
GTGCCGGTGGGCAAGGCCGCCGAGGTGGCGGTGGCGGTGGTGGCGGCGGC
GAAGAACAAAAAGGAGGGGGCGACGGGGGAGGAGGATGGGGGCACGGCGG
CGGAGTAG
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