mRNA_Ecto-sp13_S_contig12645.2189.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12645.2189.1
Unique NamemRNA_Ecto-sp13_S_contig12645.2189.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12645.2189.1 vs. uniprot
Match: D7FT61_ECTSI (CULLIN_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT61_ECTSI)

HSP 1 Score: 276 bits (706), Expect = 1.070e-86
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1 
Query:    1 RCASYLATYIDDLLKSGLRGMAEDQAEAMLEKVIVIFRYLQDKDVFENFYKTHLSKRLLGGRSVSDEMEKNMIVKLKNECGYQFTSKLEGMFTDMKISKDVMEEYRKTGRHTNHGMELVVEMLTTGYWPAQSGPK 405
            RCASYLATYIDDLLKSGLRGMAEDQAEAMLEKVIVIFRYLQDKDVFENFYKTHLSKRLLGGRSVSDEMEKNMIVKLKNECGYQFTSKLEGMFTDMKISKDVMEEYRKTGRHTNHGMELVVEMLTTGYWPAQSGPK
Sbjct:  376 RCASYLATYIDDLLKSGLRGMAEDQAEAMLEKVIVIFRYLQDKDVFENFYKTHLSKRLLGGRSVSDEMEKNMIVKLKNECGYQFTSKLEGMFTDMKISKDVMEEYRKTGRHTNHGMELVVEMLTTGYWPAQSGPK 510
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12645.2189.1 vs. uniprot
Match: A0A4D9CTV1_9STRA (CULLIN_2 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTV1_9STRA)

HSP 1 Score: 196 bits (498), Expect = 2.050e-56
Identity = 93/132 (70.45%), Postives = 107/132 (81.06%), Query Frame = 1 
Query:    1 RCASYLATYIDDLLKSGLRGMAEDQAEAMLEKVIVIFRYLQDKDVFENFYKTHLSKRLLGGRSVSDEMEKNMIVKLKNECGYQFTSKLEGMFTDMKISKDVMEEYRKTGRHTNHGMELVVEMLTTGYWPAQS 396
            RCA YLA Y+DDLLK GL+GM E+ A+  L K IVIF++LQDKDVFEN+YK HLSKRLLGGRSV+DE EK MIVKLK ECGY FTSKLEGMF DM++SKD MEE+RK G     G+EL V MLT GYWP+Q+
Sbjct:  358 RCAHYLALYVDDLLKVGLKGMTEEDADGALSKFIVIFKFLQDKDVFENYYKQHLSKRLLGGRSVNDEFEKQMIVKLKTECGYHFTSKLEGMFNDMRLSKDAMEEFRKAGVSRVGGVELEVNMLTMGYWPSQA 489
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12645.2189.1 vs. uniprot
Match: A0A835Z7J2_9STRA (Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7J2_9STRA)

HSP 1 Score: 189 bits (479), Expect = 1.190e-53
Identity = 89/132 (67.42%), Postives = 109/132 (82.58%), Query Frame = 1 
Query:    1 RCASYLATYIDDLLKSGLRGMAEDQAEAMLEKVIVIFRYLQDKDVFENFYKTHLSKRLLGGRSVSDEMEKNMIVKLKNECGYQFTSKLEGMFTDMKISKDVMEEYRKTGRHTNHGMELVVEMLTTGYWPAQS 396
            R A +LA+Y DDLL+SGLRG+ E + +  LEKVIVIFRYLQDKD+FENF+K HLSKRLL GRS+S++ E+NMI +LK ECGYQFTSKLEGMFTDM+IS+D ME YR+ G   ++G+EL V MLT GYWP Q+
Sbjct:  379 RSARFLASYADDLLRSGLRGVPEHEVDRQLEKVIVIFRYLQDKDIFENFHKIHLSKRLLTGRSISNDYERNMIARLKAECGYQFTSKLEGMFTDMRISQDAMEGYRRAGLSHSYGVELEVSMLTGGYWPTQT 510
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12645.2189.1 vs. uniprot
Match: A0A7S3XP54_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XP54_HETAK)

HSP 1 Score: 183 bits (465), Expect = 1.920e-53
Identity = 87/129 (67.44%), Postives = 105/129 (81.40%), Query Frame = 1 
Query:    1 RCASYLATYIDDLLKSGLRGMAEDQAEAMLEKVIVIFRYLQDKDVFENFYKTHLSKRLLGGRSVSDEMEKNMIVKLKNECGYQFTSKLEGMFTDMKISKDVMEEYRKTGRHTNHGMELVVEMLTTGYWP 387
            RCAS+LA Y+D+ L+ G +G +E++ EA  EKVI IFRYLQDKDVFE+FYK HL+KRLL GR+VSDE E+NMI +LK ECGYQFTSKLEGMFTDM+ISKD M++YR+       G+EL V MLTTGYWP
Sbjct:  181 RCASHLAQYVDEQLRGGFKGASEEEVEARQEKVIAIFRYLQDKDVFESFYKQHLAKRLLAGRNVSDEAERNMIARLKTECGYQFTSKLEGMFTDMRISKDTMQKYREENYFVG-GVELDVNMLTTGYWP 308
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12645.2189.1 vs. uniprot
Match: A0A7S2BUF6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BUF6_9STRA)

HSP 1 Score: 186 bits (473), Expect = 2.010e-53
Identity = 89/135 (65.93%), Postives = 109/135 (80.74%), Query Frame = 1 
Query:    1 RCASYLATYIDDLLKSGLRGMAEDQAEAMLEKVIVIFRYLQDKDVFENFYKTHLSKRLLGGRSVSDEMEKNMIVKLKNECGYQFTSKLEGMFTDMKISKDVMEEYRKTGRHTNHGMELVVEMLTTGYWPAQSGPK 405
            RCASYL  YID+LLKS L+G++E +A+ +LEKVIVIFRYLQDKD+FENFYK HL+KRLL GRSVS++ E++MI KLK ECGYQFTSKLEGMFTDM ISK+ ME +++    T   +EL V +LT GYWP  S P+
Sbjct:  269 RCASYLVLYIDELLKSSLKGLSEQEADVLLEKVIVIFRYLQDKDIFENFYKQHLAKRLLSGRSVSEDAERSMIAKLKQECGYQFTSKLEGMFTDMSISKETMENFQRPADST---VELEVNVLTAGYWPTASVPQ 400
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12645.2189.1 vs. uniprot
Match: A0A7S2W0A7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W0A7_9STRA)

HSP 1 Score: 186 bits (472), Expect = 1.070e-52
Identity = 92/140 (65.71%), Postives = 109/140 (77.86%), Query Frame = 1 
Query:    1 RCASYLATYIDDLLKSGLRGMAEDQAEAMLEKVIVIFRYLQDKDVFENFYKTHLSKRLLGGRSVSDEMEKNMIVKLKNECGYQFTSKLEGMFTDMKISKDVMEEYRKTGRHTNHGMELV------VEMLTTGYWPAQSGP 402
            RCASYL  YID+LLKSGL+GM+ED+A+A LEKVIVIFRYLQDKD+FENFYK HL+KRLL GRSVS++ E++MI KLK ECGYQFTSKLEGMF DM +SK+ ME+YR+  R  +    L       V +LT GYWP Q  P
Sbjct:  375 RCASYLVLYIDELLKSGLKGMSEDEADAHLEKVIVIFRYLQDKDIFENFYKQHLAKRLLQGRSVSEDAERSMITKLKTECGYQFTSKLEGMFVDMNVSKESMEKYREARRDMSSTRSLDGKPTLDVTVLTAGYWPTQKIP 514
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12645.2189.1 vs. uniprot
Match: A0A7S4J4U9_9EUKA (Hypothetical protein n=2 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4J4U9_9EUKA)

HSP 1 Score: 171 bits (434), Expect = 8.490e-48
Identity = 80/133 (60.15%), Postives = 107/133 (80.45%), Query Frame = 1 
Query:   13 YLATYIDDLLKSGLRGMAEDQAEAMLEKVIVIFRYLQDKDVFENFYKTHLSKRLLGGRSVSDEMEKNMIVKLKNECGYQFTSKLEGMFTDMKISKDVMEEYRKT--GRHTNHGMELVVEMLTTGYWPAQSGPK 405
            Y++ ++DD L+ GL+G +E++ E +LEKV+++FRYLQ+KDVFE +YK HL+KRLLGGRSVSD+ E++MI KLK+ECGYQFTSKLEGMF DMKIS +  +E+RK+  G     G+EL V +LTTG+WP Q G K
Sbjct:  270 YISLFVDDQLRKGLKGTSEEEVEQVLEKVVMLFRYLQEKDVFEKYYKQHLAKRLLGGRSVSDDAERSMIGKLKHECGYQFTSKLEGMFNDMKISAEGQDEFRKSLGGSSKVGGIELSVHVLTTGFWPTQLGAK 402
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12645.2189.1 vs. uniprot
Match: A0A7S0I076_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I076_9EUKA)

HSP 1 Score: 167 bits (423), Expect = 1.150e-46
Identity = 75/133 (56.39%), Postives = 104/133 (78.20%), Query Frame = 1 
Query:   13 YLATYIDDLLKSGLRGMAEDQAEAMLEKVIVIFRYLQDKDVFENFYKTHLSKRLLGGRSVSDEMEKNMIVKLKNECGYQFTSKLEGMFTDMKISKDVMEEYRKTGRHTNH--GMELVVEMLTTGYWPAQSGPK 405
            Y++ ++DD L+ G++G +E++ E  L+KV+++FRYLQ+KDVFE +YK HL+KRLLGGRSVSD+ E++MI KLK+ECGYQFTSKLEGMF DMK+S D  + +R     ++   G+EL V +LTTG+WP Q G K
Sbjct:  382 YISLFVDDQLRKGMKGTSEEEVEQTLDKVVMLFRYLQEKDVFEKYYKQHLAKRLLGGRSVSDDAERSMIAKLKHECGYQFTSKLEGMFVDMKVSADTQDAFRLANGSSSKVDGIELAVHVLTTGFWPTQVGGK 514
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12645.2189.1 vs. uniprot
Match: A0A1B6LRQ2_9HEMI (CULLIN_2 domain-containing protein (Fragment) n=2 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6LRQ2_9HEMI)

HSP 1 Score: 161 bits (407), Expect = 2.310e-46
Identity = 76/131 (58.02%), Postives = 101/131 (77.10%), Query Frame = 1 
Query:   13 YLATYIDDLLKSGLRGMAEDQAEAMLEKVIVIFRYLQDKDVFENFYKTHLSKRLLGGRSVSDEMEKNMIVKLKNECGYQFTSKLEGMFTDMKISKDVMEEYRK---TGRHTNHGMELVVEMLTTGYWPAQS 396
            YL+ +IDD LK G++GM E + E++L+K +V+FR+LQ+KDVFE +YK HL+KRLL  +SVSD+ EKNMI KLK ECG QFTSKLEGMF DM +S  +MEE+++   T     HG++L V +LTTG+WP QS
Sbjct:  128 YLSLFIDDKLKKGVKGMTEQEIESVLDKTMVLFRFLQEKDVFERYYKQHLAKRLLLNKSVSDDSEKNMISKLKTECGCQFTSKLEGMFKDMTVSNTIMEEFKEHVLTSGANLHGVDLSVRVLTTGFWPTQS 258
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12645.2189.1 vs. uniprot
Match: A9RVN5_PHYPA (Predicted protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A9RVN5_PHYPA)

HSP 1 Score: 169 bits (427), Expect = 2.370e-46
Identity = 77/137 (56.20%), Postives = 106/137 (77.37%), Query Frame = 1 
Query:    1 RCASYLATYIDDLLKSGLRGMAEDQAEAMLEKVIVIFRYLQDKDVFENFYKTHLSKRLLGGRSVSDEMEKNMIVKLKNECGYQFTSKLEGMFTDMKISKDVMEEYRKT--GRHTNHGMELVVEMLTTGYWPAQSGPK 405
            R   +++ ++DD L+ GL+G++E+  E +L+KV+++FRYLQ+KDVFE +YK HL+KRLL GR+VSD+ E+++IVKLK ECGYQFTSKLEGMFTDMK S+D M+ +  T  G   N G  L V++LTTG WP QSG +
Sbjct:  374 RSPEFISLFVDDKLRKGLKGVSEEDVELVLDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGRTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSRDTMQGFNATSAGTEGNEGPTLTVQVLTTGSWPTQSGAR 510
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12645.2189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT61_ECTSI1.070e-86100.00CULLIN_2 domain-containing protein n=2 Tax=Ectocar... [more]
A0A4D9CTV1_9STRA2.050e-5670.45CULLIN_2 domain-containing protein n=2 Tax=Monodop... [more]
A0A835Z7J2_9STRA1.190e-5367.42Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A7S3XP54_HETAK1.920e-5367.44Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S2BUF6_9STRA2.010e-5365.93Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2W0A7_9STRA1.070e-5265.71Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4J4U9_9EUKA8.490e-4860.15Hypothetical protein n=2 Tax=Prymnesium polylepis ... [more]
A0A7S0I076_9EUKA1.150e-4656.39Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A1B6LRQ2_9HEMI2.310e-4658.02CULLIN_2 domain-containing protein (Fragment) n=2 ... [more]
A9RVN5_PHYPA2.370e-4656.20Predicted protein n=2 Tax=Physcomitrium patens Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12645contigEcto-sp13_S_contig12645:3520..4974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score276.2
Seed ortholog evalue8.3e-72
Seed eggNOG ortholog2880.D7FT61
Preferred nameCUL3
Model size405
KEGG koko:K03869
KEGG Pathwayko04120,ko04340,ko04341,map04120,map04340,map04341
KEGG ModuleM00384
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000082,GO:0000122,GO:0000151,GO:0000165,GO:0000209,GO:0000278,GO:0000280,GO:0000819,GO:0000902,GO:0000904,GO:0000922,GO:0001654,GO:0001701,GO:0001709,GO:0001745,GO:0001824,GO:0001825,GO:0001829,GO:0001831,GO:0001889,GO:0002009,GO:0002165,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005102,GO:0005112,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005819,GO:0005827,GO:0005829,GO:0005856,GO:0005874,GO:0005876,GO:0005929,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006508,GO:0006511,GO:0006513,GO:0006515,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006915,GO:0006919,GO:0006928,GO:0006950,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0007050,GO:0007059,GO:0007080,GO:0007088,GO:0007154,GO:0007165,GO:0007166,GO:0007229,GO:0007267,GO:0007275,GO:0007276,GO:0007277,GO:0007278,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007292,GO:0007346,GO:0007349,GO:0007369,GO:0007399,GO:0007409,GO:0007423,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0007610,GO:0007622,GO:0007623,GO:0007626,GO:0008150,GO:0008152,GO:0008219,GO:0008284,GO:0009056,GO:0009057,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009896,GO:0009909,GO:0009911,GO:0009966,GO:0009968,GO:0009987,GO:0009994,GO:0010033,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0010638,GO:0010646,GO:0010648,GO:0010927,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0010965,GO:0012501,GO:0012505,GO:0015630,GO:0016043,GO:0016050,GO:0016055,GO:0016192,GO:0016310,GO:0016358,GO:0016477,GO:0016567,GO:0016740,GO:0017145,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019904,GO:0019941,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0022612,GO:0023014,GO:0023051,GO:0023052,GO:0023057,GO:0030029,GO:0030030,GO:0030036,GO:0030038,GO:0030071,GO:0030111,GO:0030154,GO:0030162,GO:0030163,GO:0030178,GO:0030182,GO:0030239,GO:0030332,GO:0030431,GO:0031032,GO:0031033,GO:0031034,GO:0031145,GO:0031175,GO:0031208,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031331,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031461,GO:0031463,GO:0031514,GO:0031625,GO:0031647,GO:0031648,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032436,GO:0032446,GO:0032465,GO:0032467,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032990,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033554,GO:0034622,GO:0035023,GO:0035024,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0035556,GO:0035966,GO:0035967,GO:0036126,GO:0036211,GO:0040011,GO:0040016,GO:0042127,GO:0042221,GO:0042692,GO:0042749,GO:0042752,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043009,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043149,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043280,GO:0043281,GO:0043412,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044346,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044843,GO:0045165,GO:0045187,GO:0045475,GO:0045732,GO:0045786,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045892,GO:0045931,GO:0045934,GO:0046578,GO:0046580,GO:0046907,GO:0046982,GO:0046983,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048511,GO:0048512,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048580,GO:0048582,GO:0048583,GO:0048585,GO:0048592,GO:0048598,GO:0048599,GO:0048609,GO:0048646,GO:0048666,GO:0048667,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048732,GO:0048736,GO:0048737,GO:0048749,GO:0048812,GO:0048813,GO:0048831,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050000,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050795,GO:0050896,GO:0051017,GO:0051056,GO:0051058,GO:0051094,GO:0051128,GO:0051130,GO:0051146,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051276,GO:0051301,GO:0051302,GO:0051303,GO:0051310,GO:0051336,GO:0051345,GO:0051603,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051674,GO:0051704,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051788,GO:0051983,GO:0051984,GO:0052547,GO:0052548,GO:0055001,GO:0055002,GO:0060255,GO:0060429,GO:0060562,GO:0060828,GO:0061008,GO:0061024,GO:0061061,GO:0061564,GO:0061572,GO:0061630,GO:0061659,GO:0062033,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070647,GO:0070887,GO:0070925,GO:0071218,GO:0071310,GO:0071630,GO:0071688,GO:0071704,GO:0071840,GO:0072576,GO:0080090,GO:0090068,GO:0090090,GO:0090114,GO:0090596,GO:0097190,GO:0097193,GO:0097223,GO:0097435,GO:0097729,GO:0098813,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0120025,GO:0120036,GO:0120039,GO:0140014,GO:0140096,GO:0198738,GO:1901044,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1903047,GO:1903052,GO:1903320,GO:1903322,GO:1903364,GO:1903506,GO:1903507,GO:1905114,GO:1905818,GO:1905820,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2000116,GO:2000241,GO:2000243,GO:2001056,GO:2001141,GO:2001252
Exons4
EggNOG free text desc.ubiquitin protein ligase binding
EggNOG OGsCOG5647@1,KOG2166@2759
Cds size405
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462675.2669103-CDS-Ecto-sp13_S_contig12645:3519..36271681462675.2669103-CDS-Ecto-sp13_S_contig12645:3519..3627Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12645 3520..3627 -
1681462675.2924075-CDS-Ecto-sp13_S_contig12645:3932..40281681462675.2924075-CDS-Ecto-sp13_S_contig12645:3932..4028Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12645 3933..4028 -
1681462675.301727-CDS-Ecto-sp13_S_contig12645:4291..44171681462675.301727-CDS-Ecto-sp13_S_contig12645:4291..4417Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12645 4292..4417 -
1681462675.3109436-CDS-Ecto-sp13_S_contig12645:4899..49741681462675.3109436-CDS-Ecto-sp13_S_contig12645:4899..4974Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12645 4900..4974 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12645.2189.1prot_Ecto-sp13_S_contig12645.2189.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12645 3520..4974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12645.2189.1

>prot_Ecto-sp13_S_contig12645.2189.1 ID=prot_Ecto-sp13_S_contig12645.2189.1|Name=mRNA_Ecto-sp13_S_contig12645.2189.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp
RCASYLATYIDDLLKSGLRGMAEDQAEAMLEKVIVIFRYLQDKDVFENFY
KTHLSKRLLGGRSVSDEMEKNMIVKLKNECGYQFTSKLEGMFTDMKISKD
VMEEYRKTGRHTNHGMELVVEMLTTGYWPAQSGPK
back to top

mRNA from alignment at Ecto-sp13_S_contig12645:3520..4974-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12645.2189.1 ID=mRNA_Ecto-sp13_S_contig12645.2189.1|Name=mRNA_Ecto-sp13_S_contig12645.2189.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1455bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12645:3520..4974- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGTGCGCGTCGTACCTGGCGACGTACATCGACGACCTCCTCAAGTCAGG
CCTGAGAGGGATGGCAGAGGACCAGGTTTGTGATGAAAGACAGAGAAGAA
AGAAAGATGCTATTCCTTCTTGTTCAATTCCGACAAGTTTACACGGATCT
TTCGCAGCAGCTGTCTTTTGATTGGTCGGTTTACTTTCTCGGATGTGGGA
GACAAACGCCGGAGAAGAGTGTAGAATTGCGGTTTTGTCGCCAACTAGCA
CTCCCCCTTTTCCTTCGGTGTGCCACCCCCCGCAATCGGTTATGTTTATT
GAAGGCTTGCAGATACCTTGCACACGCGGGTGGATTGTGCTCTGTTTTCG
CCACCTCGTGGAGCTGAAAGACCTTGTCCAAACTTTTTTATGCGTAGGAC
GACGAAGGTGGCCAGCGTTGATTTTTTTTTTTTGCAATCTGCTTTGCCGG
TGATCGTGCTGCCATCTGCTGCACGTCTCGACCTCCACCTCACCCCGCTG
ATTGTGGCTCGCGTTTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTTTGT
TGTCAAGGCGGAAGCGATGCTGGAGAAGGTGATCGTAATCTTCCGGTACT
TGCAGGACAAGGACGTGTTCGAGAACTTCTACAAGACTCACCTCTCCAAG
AGGCTGCTGGGCGGCAGGAGCGTCAGCGATGAGGTACGCTCGCTTTAGGT
GGTGTCGTTTGTGACTGGTTGTAAAGGTCCAGCACTGTTTTTTTTATGGC
GTGCTGGTGCAGGTGGTGTTGATGTTAGTGTCGGCCATGGTTTTGCTATC
GCTAGACTAGGGTGCAGTTAAGCTGTCGAAGACGGCAGCAGACAAGGAGG
GGTGTGAGAGTCGGGCTCAACGCTCGCGACGAAGTTGAAGAAGTCAACCA
GATGCTTTTTTTGCTGTTGTGAAATCTGGTTACAAAATTGGAGCAGATGG
AGAAGAACATGATCGTCAAGCTCAAGAACGAGTGCGGCTACCAGTTCACG
TCCAAGCTGGAGGGAATGTTCACAGATATGAAGATATCGAAGGTAAACGT
CACGCCGTCAACAGGTCCTGGTACCTATTTCGCATACATTGCTTATAATT
TAAAACTTGGCATGTGATGACAAAAGTGTGCGCCTGTTTCTGTTTTGGCA
GCGCGAGCTCTCCCGCTTGTAAGTTCTGTATGTTTTCTCTTTTTTTGCCA
TGAAATTTAGAACTGTTCGTTGTCTGCGCCAACGAACAGCAGTGCTTGTA
AGCCAGCTGTCTTCTTCTCCCAGCGTGACGTGATCGATCCCAACACCTAC
AGCAGTAGTCCACACACCGGCGTCCATTTCGTTTTTTTTTTTTCCAGGAC
GTGATGGAAGAGTACCGCAAGACCGGGAGGCATACAAACCACGGGATGGA
ACTCGTGGTAGAGATGCTCACCACGGGCTACTGGCCGGCCCAGAGCGGGC
CCAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12645:3520..4974-

>mRNA_Ecto-sp13_S_contig12645.2189.1 ID=mRNA_Ecto-sp13_S_contig12645.2189.1|Name=mRNA_Ecto-sp13_S_contig12645.2189.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12645:3520..4974- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGTGCGCGTCGTACCTGGCGACGTACATCGACGACCTCCTCAAGTCAGG
CCTGAGAGGGATGGCAGAGGACCAGGCGGAAGCGATGCTGGAGAAGGTGA
TCGTAATCTTCCGGTACTTGCAGGACAAGGACGTGTTCGAGAACTTCTAC
AAGACTCACCTCTCCAAGAGGCTGCTGGGCGGCAGGAGCGTCAGCGATGA
GATGGAGAAGAACATGATCGTCAAGCTCAAGAACGAGTGCGGCTACCAGT
TCACGTCCAAGCTGGAGGGAATGTTCACAGATATGAAGATATCGAAGGAC
GTGATGGAAGAGTACCGCAAGACCGGGAGGCATACAAACCACGGGATGGA
ACTCGTGGTAGAGATGCTCACCACGGGCTACTGGCCGGCCCAGAGCGGGC
CCAAG
back to top