mRNA_Ecto-sp13_S_contig1264.2185.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1264.2185.1
Unique NamemRNA_Ecto-sp13_S_contig1264.2185.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1264.2185.1 vs. uniprot
Match: D7G173_ECTSI (Bardet-Biedl syndrome 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G173_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 2.520e-53
Identity = 93/95 (97.89%), Postives = 93/95 (97.89%), Query Frame = 2 
Query:    2 QELSSLHQVHATDPILGVDFEEEDSPPAMESRTVAVADDDVEVLDTDEAGTDAFAAYFAEANKACDREVVFDAELGLAVESLPGGASTQSLWKLV 286
            QELSSLHQVHA DPILGVDFEEEDSPPAMESRTVAV DDDVEVLDTDEAGTDAFAAYFAEANKACDREVVFDAELGLAVESLPGGASTQSLWKLV
Sbjct:  251 QELSSLHQVHAADPILGVDFEEEDSPPAMESRTVAVTDDDVEVLDTDEAGTDAFAAYFAEANKACDREVVFDAELGLAVESLPGGASTQSLWKLV 345
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BLAST of mRNA_Ecto-sp13_S_contig1264.2185.1 vs. uniprot
Match: A0A6H5JCP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCP7_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 1.010e-48
Identity = 85/90 (94.44%), Postives = 86/90 (95.56%), Query Frame = 2 
Query:   17 LHQVHATDPILGVDFEEEDSPPAMESRTVAVADDDVEVLDTDEAGTDAFAAYFAEANKACDREVVFDAELGLAVESLPGGASTQSLWKLV 286
            +  VHA DPILGVDFEEEDSPPAMESRTVAV DDDVEVLDTDEAGTDAFAAYFAEANKACDREVVFDAELGLAVESLPGGASTQSLWKLV
Sbjct:  185 MQMVHAADPILGVDFEEEDSPPAMESRTVAVTDDDVEVLDTDEAGTDAFAAYFAEANKACDREVVFDAELGLAVESLPGGASTQSLWKLV 274
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BLAST of mRNA_Ecto-sp13_S_contig1264.2185.1 vs. uniprot
Match: A0A835YZA3_9STRA (Bardet-Biedl syndrome 5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZA3_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.520e-23
Identity = 49/94 (52.13%), Postives = 69/94 (73.40%), Query Frame = 2 
Query:    5 ELSSLHQVHATDPILGVDFEEEDSPPAMESRTVAVADDDVEVLDTDEAGTDAFAAYFAEANKACDREVVFDAELGLAVESLPGGASTQSLWKLV 286
            E+S LHQV++ DP  GV + EE+ P  +E R +A  +DDV+++DTD   ++A A Y+A+ANKA DR +VFD  L LA+ESLP GA+ QSLW++V
Sbjct:  250 EVSLLHQVYSADPNFGVHYREEEKPAVLEKRRIAPREDDVQIVDTDSKASNASAVYYADANKASDRSIVFDPTLCLAIESLPSGATVQSLWEIV 343
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BLAST of mRNA_Ecto-sp13_S_contig1264.2185.1 vs. uniprot
Match: B3RQQ8_TRIAD (Uncharacterized protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3RQQ8_TRIAD)

HSP 1 Score: 89.0 bits (219), Expect = 1.220e-18
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 2 
Query:    2 QELSSLHQVHATDPILGVDFEEEDSPPAMESRTVAVADDDVEVLDTDEAGTDAFAAYFAEANKACDREVVFDAELGLAVESLPGGASTQSLWKLV 286
            +E+ SLH+V++  PI GVD+E  + P  ++  TV V  DDVE+++ +EA TDAFAAYFA+ NK  DR  V++ +LGLAVE L  G +  SLW++V
Sbjct:  250 KEIQSLHRVYSASPIFGVDYELAEKPQQLDELTVDVVQDDVEIVNEEEA-TDAFAAYFADGNKQSDRPPVYNEQLGLAVEKLMDGYTLASLWEVV 343
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BLAST of mRNA_Ecto-sp13_S_contig1264.2185.1 vs. uniprot
Match: A0A8C4WW30_EPTBU (Bardet-Biedl syndrome 5 protein homolog n=2 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4WW30_EPTBU)

HSP 1 Score: 84.7 bits (208), Expect = 4.360e-17
Identity = 46/95 (48.42%), Postives = 62/95 (65.26%), Query Frame = 2 
Query:    2 QELSSLHQVHATDPILGVDFEEEDSPPAMESRTVAVADDDVEVLDTDEAGTDAFAAYFAEANKACDREVVFDAELGLAVESLPGGASTQSLWKLV 286
            +E+ SLH+VH+T+PI GV FE E+ P  +E  TV    DDVE+    +A  D F AYFA++NK  D E V+  ELGLAVE L  G +  SLW+++
Sbjct:  249 KEIRSLHRVHSTNPIFGVQFENEEKPQPLEEVTVQETQDDVEIDSNGQA--DVFVAYFADSNKEQDHEPVYSEELGLAVEKLRDGFTLHSLWEVL 341
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BLAST of mRNA_Ecto-sp13_S_contig1264.2185.1 vs. uniprot
Match: A0A5J4XPR6_9CHLO (Bardet-Biedl syndrome 5 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XPR6_9CHLO)

HSP 1 Score: 83.2 bits (204), Expect = 1.860e-16
Identity = 42/94 (44.68%), Postives = 65/94 (69.15%), Query Frame = 2 
Query:    5 ELSSLHQVHATDPILGVDFEEEDSPPAMESRTVAVADDDVEVLDTDEAGTDAFAAYFAEANKACDREVVFDAELGLAVESLPGGASTQSLWKLV 286
            E+ ++ QV++ +PI GV F  ED+   ++  T++   DDV+++D D   +DAFA Y+AE +K  DREV+F+ ELGLA+E+LP G + Q LW +V
Sbjct:  269 EIETVWQVYSAEPIFGVQFTVEDAARPLKDMTLSRPQDDVQIVDADT--SDAFATYYAEDSKQADREVIFNPELGLAMEALPAGLTLQELWSVV 360
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BLAST of mRNA_Ecto-sp13_S_contig1264.2185.1 vs. uniprot
Match: F0YFS0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFS0_AURAN)

HSP 1 Score: 80.5 bits (197), Expect = 1.850e-15
Identity = 44/99 (44.44%), Postives = 63/99 (63.64%), Query Frame = 2 
Query:    2 QELSSLHQVHATDPILGVDFEEEDSPPAMESRTVAVADDDVEVLDTDEAGTDA-----FAAYFAEANKACDREVVFDAELGLAVESLPGGASTQSLWKL 283
            +E++SLH V A +PI GV  E E  P  ++       +DDVE+++ ++ G  A      AAY+AE  K  DREVVFD  LGLAVE++P G +T+SLW++
Sbjct:  265 KEITSLHAVFAVNPIFGVSHESETKPKQLDDVLQRHIEDDVEIVEGEDGGGGATHDGVVAAYYAEPGKKADREVVFDEHLGLAVEAMPPGVTTKSLWEI 363
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BLAST of mRNA_Ecto-sp13_S_contig1264.2185.1 vs. uniprot
Match: A0A4Y2PT41_ARAVE (Bardet-Biedl syndrome 5 n=4 Tax=Entelegynae TaxID=74971 RepID=A0A4Y2PT41_ARAVE)

HSP 1 Score: 76.6 bits (187), Expect = 4.110e-14
Identity = 47/96 (48.96%), Postives = 64/96 (66.67%), Query Frame = 2 
Query:    2 QELSSLHQVHATDPILGVDFEEEDSPPA-MESRTVAVADDDVEVLDTDEAGTDAFAAYFAEANKACDREVVFDAELGLAVESLPGGASTQSLWKLV 286
            +E+SSL+QVH+T+PILGVDF  E+   A  E       D+DVE+++T E  T  FAAYFA+ N   DRE V+  ELGLAVE +  G +  SLW+++
Sbjct:  250 KEISSLYQVHSTNPILGVDFFIEEKVIADNEVPQCPPLDEDVEIINTKECDT--FAAYFADENHIRDREPVYCEELGLAVEKIKDGFTMSSLWEVI 343
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BLAST of mRNA_Ecto-sp13_S_contig1264.2185.1 vs. uniprot
Match: A0A812S474_SYMMI (BBS5 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812S474_SYMMI)

HSP 1 Score: 74.3 bits (181), Expect = 6.280e-14
Identity = 40/101 (39.60%), Postives = 61/101 (60.40%), Query Frame = 2 
Query:    2 QELSSLHQVHATDPILGVDFEEEDSPPAMESRTVAVADDDVEVLDTDEAGTDAFAAYFAEANKACDREVV------FDAELGLAVESLPGGASTQSLWKLV 286
            +E+ SLHQ++ + PI GVDF  E   P++++      ++DVE+ + D     A AAY+ E +   D E V      FDA+LGL++ESL GG +  SLW++V
Sbjct:  110 KEIMSLHQIYGSTPIFGVDFSVEAEAPSVQALLQPRVEEDVEITEEDSPDAHAVAAYYVEGSGGADFEAVSNADITFDAKLGLSIESLQGGVTLDSLWRVV 210
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BLAST of mRNA_Ecto-sp13_S_contig1264.2185.1 vs. uniprot
Match: A0A485LA64_9STRA (Aste57867_17753 protein n=9 Tax=Aphanomyces TaxID=100860 RepID=A0A485LA64_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.100e-13
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 2 
Query:    2 QELSSLHQVHATDPILGVDFEEEDSPPAMESRTVAVADDDVEVLDTDEAGTDAFAAYFAEANKACDREVVFDAELGLAVESLPGGASTQSLW 277
            +E+ SLH V + +PI GV++  E+ P +++        DDVE+++   +  DAFAAY+A ANK  DR  VF  ++GLA+ESLP G S   LW
Sbjct:  256 KEIKSLHAVFSINPIYGVEYTLEEKPASLDFLKQPRKIDDVEIVEDQSSSIDAFAAYYAVANKNQDRAPVFSKDIGLAIESLPEGISLGDLW 347
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1264.2185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7G173_ECTSI2.520e-5397.89Bardet-Biedl syndrome 5 n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCP7_9PHAE1.010e-4894.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YZA3_9STRA1.520e-2352.13Bardet-Biedl syndrome 5 n=1 Tax=Tribonema minus Ta... [more]
B3RQQ8_TRIAD1.220e-1849.47Uncharacterized protein n=2 Tax=Trichoplax TaxID=1... [more]
A0A8C4WW30_EPTBU4.360e-1748.42Bardet-Biedl syndrome 5 protein homolog n=2 Tax=Ep... [more]
A0A5J4XPR6_9CHLO1.860e-1644.68Bardet-Biedl syndrome 5 n=1 Tax=Trebouxia sp. A1-2... [more]
F0YFS0_AURAN1.850e-1544.44Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A4Y2PT41_ARAVE4.110e-1448.96Bardet-Biedl syndrome 5 n=4 Tax=Entelegynae TaxID=... [more]
A0A812S474_SYMMI6.280e-1439.60BBS5 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A485LA64_9STRA2.100e-1343.48Aste57867_17753 protein n=9 Tax=Aphanomyces TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1264contigEcto-sp13_S_contig1264:698..1691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score129.8
Seed ortholog evalue4.8e-28
Seed eggNOG ortholog2880.D7G173
Preferred nameBBS5
Model size357
KEGG koko:K16748
Hectar predicted targeting categoryother localisation
GOsGO:0001085,GO:0001103,GO:0001654,GO:0001655,GO:0001745,GO:0001751,GO:0001754,GO:0001822,GO:0001947,GO:0002009,GO:0003007,GO:0003143,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0005930,GO:0006810,GO:0006996,GO:0007275,GO:0007368,GO:0007369,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0008134,GO:0008150,GO:0008289,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009987,GO:0015630,GO:0016043,GO:0022008,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0032266,GO:0032400,GO:0032401,GO:0032402,GO:0032501,GO:0032502,GO:0032838,GO:0032991,GO:0033059,GO:0034451,GO:0034464,GO:0035050,GO:0035091,GO:0035239,GO:0035295,GO:0036064,GO:0042051,GO:0042461,GO:0042462,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043473,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0046530,GO:0046907,GO:0048468,GO:0048513,GO:0048562,GO:0048568,GO:0048592,GO:0048598,GO:0048645,GO:0048646,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048749,GO:0048793,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051875,GO:0051877,GO:0051904,GO:0051905,GO:0060271,GO:0060429,GO:0060562,GO:0060993,GO:0061371,GO:0070121,GO:0070491,GO:0070925,GO:0071840,GO:0072001,GO:0072003,GO:0072114,GO:0072116,GO:0072359,GO:0090596,GO:0097014,GO:0097546,GO:0097730,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1901981
Exons3
EggNOG free text desc.phosphatidylinositol-3-phosphate binding
EggNOG OGs28IRP@1,2QR2Z@2759
Ec32 ortholog descriptionBardet-Biedl syndrome 5
Ec32 orthologEc-02_001280.1
Cds size204
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462674.8170433-UTR-Ecto-sp13_S_contig1264:697..7731681462674.8170433-UTR-Ecto-sp13_S_contig1264:697..773Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1264 698..773 +
1681462674.8277855-UTR-Ecto-sp13_S_contig1264:1134..11431681462674.8277855-UTR-Ecto-sp13_S_contig1264:1134..1143Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1264 1135..1143 +
1681462674.8552644-UTR-Ecto-sp13_S_contig1264:1623..16911681462674.8552644-UTR-Ecto-sp13_S_contig1264:1623..1691Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1264 1624..1691 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462674.8376534-CDS-Ecto-sp13_S_contig1264:1143..12631681462674.8376534-CDS-Ecto-sp13_S_contig1264:1143..1263Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1264 1144..1263 +
1681462674.8468988-CDS-Ecto-sp13_S_contig1264:1539..16231681462674.8468988-CDS-Ecto-sp13_S_contig1264:1539..1623Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1264 1540..1623 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1264.2185.1prot_Ecto-sp13_S_contig1264.2185.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1264 1144..1623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1264.2185.1

>prot_Ecto-sp13_S_contig1264.2185.1 ID=prot_Ecto-sp13_S_contig1264.2185.1|Name=mRNA_Ecto-sp13_S_contig1264.2185.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
MESRTVAVADDDVEVLDTDEAGTDAFAAYFAEANKACDREVVFDAELGLA
VESLPGGASTQSLWKLV*
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mRNA from alignment at Ecto-sp13_S_contig1264:698..1691+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1264.2185.1 ID=mRNA_Ecto-sp13_S_contig1264.2185.1|Name=mRNA_Ecto-sp13_S_contig1264.2185.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=994bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1264:698..1691+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCAGGAGCTGTCCTCCTTACACCAGGTGCACGCGACCGATCCTATCTTGG
GGGTCGACTTCGAAGAGGAGGACAGCGTGAGTTTGGGAGGAAGGCTTCTG
AACTCGGCATTGATCAAATATGACGGAGGAACGAAAACAGTGAACAACGG
TTACTTTTGTGTATGTTTTTGTTGTTGTTGTTGTTGTGGTGGTGGTCGTC
GTATTTGTTGCCATCGCCGTTTTGTTGCTTGTGCTTGTGCGTGTACTTCC
ACCTTCGGTCTAGGTCCCCCACACAAACGTTGAGCGGAAAAACACACGTA
CATACATTTCGACAGGTAGGTCTCGTAGAAAATGGTGAAAAACCTGAGAC
CACACACAAACACTTTCGAGGGACACTTTCGTGCTCCCTGTCAAACCAAC
GTAACACATGTAGTTCGTATCTGTTGTATGATGGCAGCCTCCAGCGATGG
AGTCGCGAACGGTGGCCGTGGCGGACGATGACGTAGAGGTGCTCGACACG
GATGAAGCAGGGACGGATGCGTTCGCGGCTTATTTCGCAGAGGCGAACAA
GGCCTGCGATAGAGAGGTAAGACTGCAGCAAAAACAATGCTCACTTGGAC
ACAGGATCAAGAGTTGATTCTGCGTACTTCGAAGCATGCATAGGAAGCGG
ATTGTTTTTTGTTTCTTGGCAAACAAACATGTTTCCCCACATAAATATGT
AGATTTCGTACTCTTGGTAGTGTTTGAGTGAGTGTCTGCTTCCCCAACAA
ACGCAACGAAAGTCTAGGCTACAGGACAACAGCCCAACGTTGACTCAGTC
AGCTCGTTCGCGTCCACTTTCTTCTCGTGTCCTTCTTCGCAGGTTGTGTT
CGACGCGGAGCTGGGTCTAGCGGTGGAGAGCCTACCAGGAGGGGCCTCCA
CGCAAAGCTTGTGGAAACTAGTCTAGCCGCACCGTCCGGCAGTCATTGCA
ATTGCACTGCCCTCGTGAACGAACGGAACACGTCTATCGTTGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1264:698..1691+

>mRNA_Ecto-sp13_S_contig1264.2185.1 ID=mRNA_Ecto-sp13_S_contig1264.2185.1|Name=mRNA_Ecto-sp13_S_contig1264.2185.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1264:698..1691+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGTCGCGAACGGTGGCCGTGGCGGACGATGACGTAGAGGTGCTCGA
CACGGATGAAGCAGGGACGGATGCGTTCGCGGCTTATTTCGCAGAGGCGA
ACAAGGCCTGCGATAGAGAGGTTGTGTTCGACGCGGAGCTGGGTCTAGCG
GTGGAGAGCCTACCAGGAGGGGCCTCCACGCAAAGCTTGTGGAAACTAGT
CTAG
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