mRNA_Ecto-sp13_S_contig12638.2183.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12638.2183.1
Unique NamemRNA_Ecto-sp13_S_contig12638.2183.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12638.2183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12638contigEcto-sp13_S_contig12638:961..2318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size436
Hectar predicted targeting categorysignal peptide
Exons2
Cds size117
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462674.7619524-UTR-Ecto-sp13_S_contig12638:960..10221681462674.7619524-UTR-Ecto-sp13_S_contig12638:960..1022Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12638 961..1022 -
1681462674.7752295-UTR-Ecto-sp13_S_contig12638:1944..21951681462674.7752295-UTR-Ecto-sp13_S_contig12638:1944..2195Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12638 1945..2195 -
1681462674.7930138-UTR-Ecto-sp13_S_contig12638:2312..23181681462674.7930138-UTR-Ecto-sp13_S_contig12638:2312..2318Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12638 2313..2318 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462674.7844582-CDS-Ecto-sp13_S_contig12638:2195..23121681462674.7844582-CDS-Ecto-sp13_S_contig12638:2195..2312Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12638 2196..2312 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12638.2183.1prot_Ecto-sp13_S_contig12638.2183.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12638 2196..2312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12638.2183.1

>prot_Ecto-sp13_S_contig12638.2183.1 ID=prot_Ecto-sp13_S_contig12638.2183.1|Name=mRNA_Ecto-sp13_S_contig12638.2183.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=39bp
MLEMTLIILLGLSALLDTSAGGWMGSFEQHRETRSMGV*
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mRNA from alignment at Ecto-sp13_S_contig12638:961..2318-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12638.2183.1 ID=mRNA_Ecto-sp13_S_contig12638.2183.1|Name=mRNA_Ecto-sp13_S_contig12638.2183.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1358bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12638:961..2318- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGAGAATGCTGGAGATGACTTTGATAATTCTGCTGGGGCTCTCCGCTTT
GTTGGATACCTCCGCAGGTGGGTGGATGGGTTCGTTTGAGCAACATCGGG
AAACACGATCGATGGGTGTGTAAGTCGTACGTGTAACCGCCACGGTCAAC
TCCTTTCGGTGGTCAAAACCGTACCACGGCTCTCCAACATTGTTCTGTGA
CACAGCAGGGCAGACCAGTATTTTGATCCAAACGCTGGCATGTAAACGCT
GTTCCATTTGCATAGTAGGCAGGCAGGGAGACACCGAACAGGGGGGGGTT
CATTCGCTTGCAAGCACAGGATTTACCTCAGGATGGTGGTGTGAAGACAT
GAAGTTTGTTCACTTCTTTGAGCGGTGAGTAGCCAATTTCTCAGGTGGTG
CAGTTGGTCATTGCGAAACCACAATCGTGTGCGGCTCCGCATCACCTTGC
AGTACCCCCCCTGTAGAGTTTGTTAACAAGAGTGACCGATTTTCTTGGAA
AGTCAAAGGTTAACTTCGTAGGCCAACGTTGGTGCCGCCGGTGTGTTGGG
TCGTTTTCGAAGACATTGCCAGCTGTGAAATTTGTTACTGTTTCGGAGGG
GTCGATCTCACGGAACGGAGTTTGTCGAATCGTGCGATGCTGTATGTCCT
TGCAGCAGTCCTTTGGCGGCGTTCAGACTGCCCGACTTAAACGGAACCTA
TCTTCTTCCTCGGTGGACCCCTTAAATTGGGATTTACGTTATTTGAACGG
TTCACGTAGGTAAAGGAAGGTGCACTTTAGCGCATGGGGCGCGTACGCTA
TAGCAGCTTCATTTTGACGACACAGCGTTGGTATTGTAGACATGCTGCTT
TAGGTAGGTTTGGAAACCAAAAATTGAAAGCACTTTCCCCGTTCGGAGAG
TTGTCAGCTTGACATCTAGCCTGCCTGTGTTCGTGTGCTGACGTCATTGG
ACCATGTCCAGTGCCTCGTTTTTTGCCTCGAACATCCACGCCGATTTTGG
TTGTGGAGGCTGCGGTCCATGGTTGATCGACTGGATAAGTTGGCGGTTTC
CCCGCGTTGCTCACACGGAGAGCCGGTGGCATCGATACCAGTTTTTTCGA
GCCCGCTGTTTGGTTTGCCTCGTACTCCGGTATCTCTTCTCTATCGTGGA
ACATCGCAGTGCGGTGCCCTAGTTCACTGGTCGATTCGGCAATATACATT
TCTGATACAGCTGCTGACAGTTGTGTGCCAATCTCACCATCCGCCCACTC
ATCTCCTCTCATATGCCGTCTGTCCTGCGTACGCCGTTGGTTGCAGTGAA
TGAATGCCTGGACTCCACCGACGTCGACAGATGTCGAACTACTACTACCG
GAAGTTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12638:961..2318-

>mRNA_Ecto-sp13_S_contig12638.2183.1 ID=mRNA_Ecto-sp13_S_contig12638.2183.1|Name=mRNA_Ecto-sp13_S_contig12638.2183.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=117bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12638:961..2318- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGAGATGACTTTGATAATTCTGCTGGGGCTCTCCGCTTTGTTGGA
TACCTCCGCAGGTGGGTGGATGGGTTCGTTTGAGCAACATCGGGAAACAC
GATCGATGGGTGTGTAA
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