mRNA_Ecto-sp13_S_contig12637.2182.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12637.2182.1
Unique NamemRNA_Ecto-sp13_S_contig12637.2182.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12637.2182.1 vs. uniprot
Match: A0A6H5KC42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC42_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 2.670e-56
Identity = 94/102 (92.16%), Postives = 96/102 (94.12%), Query Frame = 1 
Query:    1 QEDSTLRTPRRVARTRNPLHSFHVCPLLLHEKLCDGGGRPVHKFVFACPGTAAGLVGSMEGVCHFNMRLAQEAGMTVVQRAYNAFAVRVLDEEGKRRVVPAL 306
            QE+ TLRT RRVARTRNPLH FHVCPLLLHEKLCDGGGRPVHKFVFACPGTAA LVGSMEGVCHF MRL QEAGMTVV+RAYNAFAVRVLDEEGKRRVVPAL
Sbjct:  384 QEEITLRTSRRVARTRNPLHLFHVCPLLLHEKLCDGGGRPVHKFVFACPGTAAALVGSMEGVCHFKMRLTQEAGMTVVERAYNAFAVRVLDEEGKRRVVPAL 485
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BLAST of mRNA_Ecto-sp13_S_contig12637.2182.1 vs. uniprot
Match: D8LB74_ECTSI (Delta-9 desaturase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB74_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 1.030e-55
Identity = 98/116 (84.48%), Postives = 99/116 (85.34%), Query Frame = 1 
Query:    4 EDSTLRTPRRVARTRNPLHSFHVCPLLLHEKLCDGGGRPVHKFVFACPGTAAGLVGSMEGVCHFNMRLAQEAGM---------------TVVQRAYNAFAVRVLDEEGKRRVVPAL 306
            EDSTLR PRRVARTRNPLHSFHVCPLLLHEKLCDGGGRPVHKFVFACPGTAA LVGSMEGVCHFNMRLAQEAGM               TVVQRAYNAFAVRVLDEEGKRRVVP+L
Sbjct:  641 EDSTLRIPRRVARTRNPLHSFHVCPLLLHEKLCDGGGRPVHKFVFACPGTAAALVGSMEGVCHFNMRLAQEAGMRLPRYRQKPVYVARQTVVQRAYNAFAVRVLDEEGKRRVVPSL 756
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BLAST of mRNA_Ecto-sp13_S_contig12637.2182.1 vs. uniprot
Match: A0A6H5JX59_9PHAE (Cytochrome b5 heme-binding domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX59_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 1.810e-52
Identity = 90/98 (91.84%), Postives = 91/98 (92.86%), Query Frame = 1 
Query:   13 TLRTPRRVARTRNPLHSFHVCPLLLHEKLCDGGGRPVHKFVFACPGTAAGLVGSMEGVCHFNMRLAQEAGMTVVQRAYNAFAVRVLDEEGKRRVVPAL 306
            TLRT RRVARTRNPLH FHVCPLLLHEKLCDGGGRPVHKFVFAC GTA  LVGSMEGVCHF MRLAQEAGM VV+RAYNAFAVRVLDEEGKRRVVPAL
Sbjct:  567 TLRTSRRVARTRNPLHLFHVCPLLLHEKLCDGGGRPVHKFVFACLGTAEALVGSMEGVCHFKMRLAQEAGMIVVERAYNAFAVRVLDEEGKRRVVPAL 664
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BLAST of mRNA_Ecto-sp13_S_contig12637.2182.1 vs. uniprot
Match: A0A6H5KPD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD0_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.170e-24
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:   10 STLRTPRRVARTRNPLHSFHVCPLLLHEKLCDGGGRPVHKFVFACPGTAAGLVGSMEG 183
            +TLR PRRVARTRNPL SFHVCPLLL EKLCDGGGRPV KFVFACPGTAA LV   +G
Sbjct:  341 ATLRVPRRVARTRNPLQSFHVCPLLLREKLCDGGGRPVQKFVFACPGTAAALVSHTDG 398
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BLAST of mRNA_Ecto-sp13_S_contig12637.2182.1 vs. uniprot
Match: D7FX04_ECTSI (Dopamine beta-monooxygenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX04_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.080e-14
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:   55 LHSFHVCPLLLHEKL----CDGGG-----RPVHKFVFACPGTAAGLVGSMEGVCHFNMRLAQEAGMTVVQRAYNAFAVRVLD 273
            L  FHVCPLL  E++      G G     RPV++++F CPG A  L  ++ GVC+FNMR AQE G  V+QR+YNA+AVRV D
Sbjct:  713 LERFHVCPLLFRERMGATSAVGRGNLPTTRPVYRYIFLCPGQAQVLPQNITGVCYFNMR-AQEKGNGVIQRSYNAYAVRVRD 793
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BLAST of mRNA_Ecto-sp13_S_contig12637.2182.1 vs. uniprot
Match: D7FQW8_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW8_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 2.760e-14
Identity = 49/111 (44.14%), Postives = 63/111 (56.76%), Query Frame = 1 
Query:   28 RRVARTRNPLHSFHVCPLLLHEKLCD----GGG-----RPVHKFVFACPGTAAGLVGSMEGVCHFNMRLAQEAGMTVVQRAYNAFAVRVL------DEEGKR----RVVPA 303
            +R   ++  L  FHVCPLL  EK+      G G     RP ++++F+CPG A  LV ++ GVCHF+M   Q  G  V+QRAYNA+AVRV       D  GK     RVVPA
Sbjct:  917 KRTWSSKKLLQRFHVCPLLFREKMGTDSPIGRGLLFTKRPTYRYIFSCPGQAQALVETIHGVCHFHMP-GQVPGKGVIQRAYNAYAVRVQGFVDGKDGSGKGATPPRVVPA 1026
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BLAST of mRNA_Ecto-sp13_S_contig12637.2182.1 vs. uniprot
Match: D7G7J2_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J2_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 2.780e-14
Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:   55 LHSFHVCPLLLHEKL----CDGGG-----RPVHKFVFACPGTAAGLVGSMEGVCHFNMRLAQEAGMTVVQRAYNAFAVRVLDEE 279
            L  F VCPLL  E++      G G     RPV++++F+CP  A     ++ GVC+FNMR AQE G  VVQR YNAFAVR+LD E
Sbjct: 1088 LERFQVCPLLFRERMGAASAVGRGHLPSKRPVYRYIFSCPAKAQAQAQAVSGVCYFNMR-AQEEGKGVVQRPYNAFAVRLLDVE 1170
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BLAST of mRNA_Ecto-sp13_S_contig12637.2182.1 vs. uniprot
Match: D7G7J1_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J1_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 3.790e-14
Identity = 41/81 (50.62%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:   64 FHVCPLLLHEKL----CDGGG-----RPVHKFVFACPGTAAGLVGSMEGVCHFNMRLAQEAGMTVVQRAYNAFAVRVLDEE 279
            F VCPLL  E++      G G     RPV++++F+CP        ++ GVC+FNMR AQE G  VVQRAYNAFAVR+LD E
Sbjct: 1097 FQVCPLLFRERMGAASAVGRGHLPSKRPVYRYIFSCPANGQAQAQAVSGVCYFNMR-AQEEGKGVVQRAYNAFAVRLLDVE 1176
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BLAST of mRNA_Ecto-sp13_S_contig12637.2182.1 vs. uniprot
Match: A0A6H5JBL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL8_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 9.710e-14
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:   55 LHSFHVCPLLLHEKL----CDGGG-----RPVHKFVFACPGTAAGLVGSMEGVCHFNMRLAQEAGMTVVQRAYNAFAVRVLD 273
            L  FHVCPLL  E++      G G     RPV++++F CPG A  L  ++ GVC+FNMR AQE G  V+QR+YNA+AVRV D
Sbjct: 1405 LERFHVCPLLFRERMGATSAVGRGNLPTTRPVYRYIFLCPGQAQVL--NITGVCYFNMR-AQEKGKGVIQRSYNAYAVRVRD 1483
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BLAST of mRNA_Ecto-sp13_S_contig12637.2182.1 vs. uniprot
Match: A0A6H5K906_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K906_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 2.160e-5
Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 1 
Query:  226 TVVQRAYNAFAVRVLDEEGKRRVVPAL 306
            TVVQRAY+AFAVRVLDE+GKRRVVPAL
Sbjct:   46 TVVQRAYSAFAVRVLDEKGKRRVVPAL 72
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12637.2182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KC42_9PHAE2.670e-5692.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB74_ECTSI1.030e-5584.48Delta-9 desaturase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JX59_9PHAE1.810e-5291.84Cytochrome b5 heme-binding domain-containing prote... [more]
A0A6H5KPD0_9PHAE1.170e-2482.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX04_ECTSI1.080e-1451.22Dopamine beta-monooxygenase, putative n=1 Tax=Ecto... [more]
D7FQW8_ECTSI2.760e-1444.14Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G7J2_ECTSI2.780e-1450.00Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G7J1_ECTSI3.790e-1450.62Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JBL8_9PHAE9.710e-1451.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K906_9PHAE2.160e-592.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12637contigEcto-sp13_S_contig12637:2816..4681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score79.0
Seed ortholog evalue1.5e-12
Seed eggNOG ortholog2880.D7FX04
Model size308
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.DOMON domain
EggNOG OGs2D0T2@1,2SFBV@2759
Ec32 ortholog descriptionCytochrome b5-like heme/steroid binding domain
Ec32 orthologEc-27_004940.2
Cds size306
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462674.663399-CDS-Ecto-sp13_S_contig12637:2815..29801681462674.663399-CDS-Ecto-sp13_S_contig12637:2815..2980Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12637 2816..2980 +
1681462674.6813853-CDS-Ecto-sp13_S_contig12637:4075..41351681462674.6813853-CDS-Ecto-sp13_S_contig12637:4075..4135Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12637 4076..4135 +
1681462674.689499-CDS-Ecto-sp13_S_contig12637:4598..46791681462674.689499-CDS-Ecto-sp13_S_contig12637:4598..4679Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12637 4599..4679 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12637.2182.1prot_Ecto-sp13_S_contig12637.2182.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12637 2816..4679 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12637.2182.1

>prot_Ecto-sp13_S_contig12637.2182.1 ID=prot_Ecto-sp13_S_contig12637.2182.1|Name=mRNA_Ecto-sp13_S_contig12637.2182.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp
QEDSTLRTPRRVARTRNPLHSFHVCPLLLHEKLCDGGGRPVHKFVFACPG
TAAGLVGSMEGVCHFNMRLAQEAGMTVVQRAYNAFAVRVLDEEGKRRVVP
AL
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mRNA from alignment at Ecto-sp13_S_contig12637:2816..4681+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12637.2182.1 ID=mRNA_Ecto-sp13_S_contig12637.2182.1|Name=mRNA_Ecto-sp13_S_contig12637.2182.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1866bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12637:2816..4681+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAAGACAGCACGCTCAGGACCCCGCGCAGGGTGGCGAGAACGAGGAA
CCCGCTCCATTCTTTCCACGTGTGTCCCTTGCTGCTGCACGAGAAGCTGT
GTGACGGCGGCGGGCGGCCTGTGCACAAGTTTGTGTTCGCCTGTCCGGGA
ACGGCGGCAGGCCTGGTGAGTCACACAGGTAGATGTAGATCATGTGTTCG
TCTTGCGGCTGTCGTTGAGTTGGATATATTTGCAGAGGGTCACGATACAA
TAGCGGGTACCGTAGGCGACAAGACGATTCACCCGCCCTATAGCGGGCAC
CCACCTTGCTCAAAGTTTGAAAACAAGTAAGATTTCACCCACCCAATGTT
ATGGTATTTGGAAGTAGACATGTGATCGTGGTTGACCTTGGTTGTTTGGC
GCCGTCGGATGCTGAGACGTAACGTCATGCTCGATTAGAGCTTTTTGCCG
AGGCATGTGTCCGTTTGTTCAGGGTGTGCAGACGATCCGTGATGGTGTGT
GCTTGGGATCTTATGAGTTGGCTTGGAAAGCGTTAATCAAAAGAAAAAAA
ACAACGGAAAGCAACAACAACCTGCACCTGTGGTCGGACAACAGAGTTCC
ACACAGCACAGAGGTGATTGATTCTGAAGACGGGGTCAAATCTCAGCACA
GTAATATGCAGTCTACAATATTTCCCGTACAACCCATCCGCTTGAGGGCC
CACGAGTGTACTGGTAAGTAGGGCTCTTGGCACTGGGTTTTGAAGGGGGA
GAATCTGCCGAAACTTATTCGCCCATCAGACCTAGAGGTTCGTGTTCGAG
GCGAGAAATTTTTCCGAATCGAATACTTCAATGTATTGTTCCTCTGCACC
CCCCCTGTGGATTGTAGTTTTGACTTGCTTTCGTTCTTATTGGCGTTGTC
TTGATATTGAAACTATGTTCTGACCTCTTGCTGCCCCCGTCCTGCAGGCA
AAGAGACAGATTCCCGTGTTCGTAAGCTGGCCTGAACAAGTGCTAAGAAA
TCCCCACCACTCGCGGAGGATATCGAACAACACGTACAGGATGACAACGC
GTGGAGGGTAGTTGTTGCTGCCAGTATTGTTAATATGGTGGCAGTTGAAC
GAAATCAAACGTTCCTTGGAAATCAACAATATGCTGGGGGGGAACTCAAC
CCAAAACGTGGATGCTTCCACCCCCTACCGCCCAAACGTCTTCTTCATTC
TTAATTTGTCTTTGTGCGCCGCTGTCGTTGCCGACGGTCTGCCTGCACGC
ATTGTAACAGGTTGGTTCAATGGAGGGGGTCTGCCACTTCAACATGCGGT
TGGCTCAAGAGGCGGGGATGGTGAGTGCTGATTGCGCCAGACTGAGACCA
TTCGAGAGGTCGCGCGCGTGTCTCATTTCTCTTCAAGCTTGATCGCTTGG
AAGGCAGGGGAGGAAATGGTACTTGGCTTAGAATTCACAATCCGTTCTTG
ACGACAGCTGATGCTGCTGCTCTGCTGCTGCTGTTGCTATTTCGGAAACA
AAGGCTAAGGTTATCACTTCTTGAAATCGCACTGCGCTTTACGGTACCTG
TTCACCTCTTGTCCTGTCCGGCGGTACCTGCTTACCTCCTGTCCGGCGTC
CTCTTTGGCAGAGACCGTCCCGCGATCGCCAAAAGCCTGTCCACGTCGCT
CGGCATGAGTGTAGTTAGAGAGCATCATGCCTCTTCCTTAACCTCCGTCC
CCTACCCTTTTCCCGTCTTATCGTCTCCGACAAAACACGTTCGGACTCCT
TGCGGCGGAACAAACACACAACAACCCGCACAGACCGTGGTACAGCGGGC
GTACAACGCTTTCGCGGTACGGGTTCTCGACGAGGAGGGAAAGCGGCGGG
TGGTGCCCGCACTCGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12637:2816..4681+

>mRNA_Ecto-sp13_S_contig12637.2182.1 ID=mRNA_Ecto-sp13_S_contig12637.2182.1|Name=mRNA_Ecto-sp13_S_contig12637.2182.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12637:2816..4681+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAAGACAGCACGCTCAGGACCCCGCGCAGGGTGGCGAGAACGAGGAA
CCCGCTCCATTCTTTCCACGTGTGTCCCTTGCTGCTGCACGAGAAGCTGT
GTGACGGCGGCGGGCGGCCTGTGCACAAGTTTGTGTTCGCCTGTCCGGGA
ACGGCGGCAGGCCTGGTTGGTTCAATGGAGGGGGTCTGCCACTTCAACAT
GCGGTTGGCTCAAGAGGCGGGGATGACCGTGGTACAGCGGGCGTACAACG
CTTTCGCGGTACGGGTTCTCGACGAGGAGGGAAAGCGGCGGGTGGTGCCC
GCACTC
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