mRNA_Ecto-sp13_S_contig1263.2177.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1263.2177.1
Unique NamemRNA_Ecto-sp13_S_contig1263.2177.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1263.2177.1 vs. uniprot
Match: A0A6H5J8G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8G0_9PHAE)

HSP 1 Score: 570 bits (1468), Expect = 1.600e-194
Identity = 314/348 (90.23%), Postives = 321/348 (92.24%), Query Frame = 1 
Query:    1 ATKVDGGRTSEWAGAGAGGGDSGAVDPQASEAAAAGDETGIVGAGTESGTGATGTGAKNHGSPVGWLHSREVAVVSSPVRRDQPTLMAQTGHGGGGDADASEVASIPRRRKENKVVADLLVIEEGNAIDGGGARGSGTDDVNGGRGGDSEGPWEEAKHRAWALLVSPVIVAVVAGIVICTIAPLQDMLFHNPQALLRPLGGAIQAVGVPTVTVSSLVMAGSLVAVSADADGAASPAGGDETAVPIWRRPRFVTGFLLVFLRLVAIPAAFFGIFWVAKTYGSVMGENRLMHLILLVEFAMPTATIMIPLLHQIRLPRTAGYISRLLVWQYAASSITVSFWTACAITMLY 1044
            A KVDG R SEWA  GA GGDSGAVDPQA  AAAAGDETG+VGA TESGTGATGTGAK+HGSPVG LHSREV V S+P+ RDQPTLM QTG GG GDADASEVAS+PRRRKENK VADLLVIEEGN IDGGGARGSGT DVNGGRG DSEGPWEEAKHRAWALLVSPVIVAVVAGIVICTI PLQDMLFHNPQALLRPLGGAIQAVGVPTVTVSSLVMAGSLVAVSA AD AA PAGG+E AVPIWRRPRFVTGFLLVFLRLVAIPAAFFGIFWVAKTY SVMGENRLMHLILLVEFAMPTATIMIPLLHQIRLPRTAG+ISRLLVWQYAASSITVSFWTA AITMLY
Sbjct:  276 AAKVDGDRASEWAEGGAVGGDSGAVDPQAG-AAAAGDETGVVGAATESGTGATGTGAKSHGSPVGSLHSREVGVESTPLGRDQPTLMEQTGRGGCGDADASEVASMPRRRKENKAVADLLVIEEGNVIDGGGARGSGTGDVNGGRGSDSEGPWEEAKHRAWALLVSPVIVAVVAGIVICTIEPLQDMLFHNPQALLRPLGGAIQAVGVPTVTVSSLVMAGSLVAVSAVADEAAPPAGGNEVAVPIWRRPRFVTGFLLVFLRLVAIPAAFFGIFWVAKTYSSVMGENRLMHLILLVEFAMPTATIMIPLLHQIRLPRTAGFISRLLVWQYAASSITVSFWTALAITMLY 622
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1263.2177.1 vs. uniprot
Match: D7FW24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW24_ECTSI)

HSP 1 Score: 278 bits (712), Expect = 1.430e-87
Identity = 149/162 (91.98%), Postives = 153/162 (94.44%), Query Frame = 1 
Query:  559 MLFHNPQALLRPLGGAIQAVGVPTVTVSSLVMAGSLVAVSADADGAASPAGGDETAVPIWRRPRFVTGFLLVFLRLVAIPAAFFGIFWVAKTYGSVMGENRLMHLILLVEFAMPTATIMIPLLHQIRLPRTAGYISRLLVWQYAASSITVSFWTACAITMLY 1044
            MLFHNPQALLRPLGGAIQAVGVPTVTVSSLVMAGSLVAVSA A+GAA  AGG E AVPIWRRPRFV GFLLVFLRL+AIPAAFFG+FW AKTY SVMGENRLMHLILLVEFAMPTATIMIPLLHQIRLPRTAG+ISRLLVWQYAASSITVSFWTA AITMLY
Sbjct:    1 MLFHNPQALLRPLGGAIQAVGVPTVTVSSLVMAGSLVAVSAVANGAAPSAGGHEAAVPIWRRPRFVMGFLLVFLRLIAIPAAFFGVFWGAKTYSSVMGENRLMHLILLVEFAMPTATIMIPLLHQIRLPRTAGFISRLLVWQYAASSITVSFWTAFAITMLY 162
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1263.2177.1 vs. uniprot
Match: A0A6H5JAX8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAX8_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 6.340e-52
Identity = 129/269 (47.96%), Postives = 168/269 (62.45%), Query Frame = 1 
Query:  253 TLMAQTGHGGGGDADASEVASIPRRRKENKVVADLLVIEEGNAIDGGGARGSGTDDVNGGRGGD-SEG-PWEEAKHRAWALLVSPVIVAVVAGIVICTIAPLQDMLFHNPQALLRPLGGAIQAVGVPTVTVSSLVMAGSLVAVSADADGAASPAGG---DETAVPIWRRPRFVTGFLLVFLRLVAIPAAFFGIFWVAKTYGSVMGENRLMHLILLVEFAMPTATIMIPLLHQIRLPRTAGYISRLLVWQYAASSITVSFWTACAITMLY 1044
            T  A+  HGG G  +A+E            VV D+       +   G     GT+D     GGD SEG PW   K R   +LVSP I++V  G+VI  IAPLQ+MLF N +++LRPLG A+Q VG P V VS+LVMAGSL  V   A  AAS  GG   D+  +   RR R + GFL V  RL+ +PA  F +FWVA+T  SVMGENRLMHLILL+EFAMP+A  +I  L+Q+R+P TAG+++RL +WQY AS +T++ WTA A+ ++Y
Sbjct:  211 TSSARQEHGGVGRINAAEA-----------VVIDIEPCTGEESSSEGTTNAGGTED-----GGDVSEGGPWAGFKERVSRVLVSPNIISVTIGVVIAMIAPLQEMLFDNSRSILRPLGAALQTVGTPEVAVSTLVMAGSLAQVPTVA--AASTQGGQGDDDGTLRRKRRFRIIAGFLHVVCRLIVVPAIGFTLFWVARTQSSVMGENRLMHLILLIEFAMPSAAFVIVSLNQLRMPATAGFMARLYLWQYGASMLTITAWTALAVHLVY 461
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1263.2177.1 vs. uniprot
Match: D7FW26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW26_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 1.520e-51
Identity = 108/211 (51.18%), Postives = 146/211 (69.19%), Query Frame = 1 
Query:  430 GRGGDSEG--PWEEAKHRAWALLVSPVIVAVVAGIVICTIAPLQDMLFHNPQALLRPLGGAIQAVGVPTVTVSSLVMAGSLVAV-SADADGAASPAGG---DETAVPIWRRPRFVTGFLLVFLRLVAIPAAFFGIFWVAKTYGSVMGENRLMHLILLVEFAMPTATIMIPLLHQIRLPRTAGYISRLLVWQYAASSITVSFWTACAITMLY 1044
            G+ GD EG   W   + R W L+VSP ++AV  G+ I  I  LQ+ LF NP+A+LRPLG A++ +G PTV VS+LVMAGSLV V +  A  AA+  GG   D+  +  WRR R + GFL V  RL+ +PA  F +FWVA+   SVMGENRLMHLILL+E AMP+A  +I  L+Q+R+P TAG+++RL +WQY AS +T++ WTA A+ ++Y
Sbjct:  261 GKDGDDEGCCSWAGLRRRLWRLVVSPNMIAVAIGVTIAMIPALQEQLFDNPRAVLRPLGAAVETIGSPTVAVSTLVMAGSLVQVPTVGAASAAASQGGQGDDDGTLRRWRRFRILVGFLHVVCRLIVVPAVGFTLFWVARNQSSVMGENRLMHLILLIELAMPSAAFVIVSLNQLRMPATAGFMARLYLWQYGASMVTITAWTALAVHLVY 471
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1263.2177.1 vs. uniprot
Match: A0A6H5J918_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J918_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.210e-18
Identity = 47/84 (55.95%), Postives = 66/84 (78.57%), Query Frame = 1 
Query:  793 IPAAFFGIFWVAKTYGSVMGENRLMHLILLVEFAMPTATIMIPLLHQIRLPRTAGYISRLLVWQYAASSITVSFWTACAITMLY 1044
            +PA  F +FWVA+   SVMGENRLMHLILL+E AMP+A  +I  L+Q+R+P TAG+++RL +WQY AS +T++ WTA A+ ++Y
Sbjct:  594 VPAVGFTLFWVARNQSSVMGENRLMHLILLIELAMPSAAFVIVSLNQLRMPATAGFMARLYLWQYGASMLTITAWTALAVHLVY 677
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1263.2177.1 vs. uniprot
Match: A0A8J2SPR5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SPR5_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 4.000e-8
Identity = 65/211 (30.81%), Postives = 101/211 (47.87%), Query Frame = 1 
Query:  442 DSEGPWEEAKHRAWALLVSPVIVAVVAGIVICTIAPLQDMLFH-NPQALLRPLGGAIQAVGVPTVTVSSLVMAGSLVAVSADADGAASPAGGDETAVP-------IWRRPRFVTGFL--LVFLRLVAIPAAFFGIFWVAKTYGSVMGENRLMHLILLVEFAMPTATIMIPLLHQIRLPRTAGYISRLLVWQYAASSITVSFWTACAITMLY 1044
            +S  P  +      + +  P+  A+  G  I  IAPL+  LF    ++ LR +GG ++ +  PTV V+ L++  SL  V  +A  A   +  D  A P       +W     V G +   V +RL+ +PA   G      T    + + RL   +LL+   MPTA IMI LLH+  L + A  +S L V+QYAAS  T++   +  +  +Y
Sbjct:  186 ESGSPAPKPAEAVGSCVREPINAALAVGTAIGLIAPLRRGLFSVGGRSPLRIIGGTVELLASPTVCVAVLLVGASLANVDLNALAAPDKSARDAEAPPPPPAKRSVWGAVYAVRGIISGFVVVRLLVVPAIV-GALEALATATIPIPQARLGRAVLLISSGMPTAQIMIVLLHKFGLSQQASELSFLFVFQYAASIPTMTALISSVLNRVY 395
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1263.2177.1 vs. uniprot
Match: R1DD74_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DD74_EMIHU)

HSP 1 Score: 61.6 bits (148), Expect = 2.010e-6
Identity = 60/214 (28.04%), Postives = 105/214 (49.07%), Query Frame = 1 
Query:  457 WEEAK-------HRAWALLVSPVIVAVVAGIVICTIAPLQDMLFHNPQALLRPLGGAIQAVGVPTVTVSSLVMAGSLVAVSADADGAASPAGGDETAVPIWRR----------PRFVTGFLLVFLRLVAIPAAFFGIFWVAKTYGSVMGE---NRLMHLILLVEFAMPTATIMIPLLHQIRLPRTAGYISRLLVWQYAASSITVSFWTACAITM 1038
            W+ A+        R+ AL   P ++ V+ G++I  I P+Q++LF  P A L P+G A+ A+    V + +L++A SL              G    A+  WR           PR  T   L   R+V  P    G+ +      +V+GE   +RLM +I+ VE A PTA++++ +LH  + PR+A  ++  ++ QY  +++T++     A+ +
Sbjct:  188 WQRARALALLGGKRSVALFRRPPVLGVIVGLIIGLIRPVQEVLFA-PGAALLPIGQALSALSEGAVPIVNLMLAFSL--------------GHKLRALKSWRELLGSKGAGISPR--TMVTLTLGRMVLAPLCHGGVIY------AVLGELPPSRLMRVIVFVEMAPPTASMVVVMLHLAKKPRSAQLVAWAIIPQYLLATVTLTLTITFALAV 378
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1263.2177.1 vs. uniprot
Match: F0XVW1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVW1_AURAN)

HSP 1 Score: 60.5 bits (145), Expect = 9.280e-6
Identity = 65/207 (31.40%), Postives = 97/207 (46.86%), Query Frame = 1 
Query:  499 PVIVAVVAGIVICTIAPLQDMLFHNPQALLRPLGGAIQAVGVPTVTVSSLVMAGSLVAVSADADGA--ASPAGGDETAVPIWR-----------------------RPRFVTGFLLVFLRLVAIPAAFFGIFWVAKTYGSVMGENRLMHLILLVEFAMPTATIMIPLLHQIRLPRTAGYISRLLVWQYAASSITVSFWTACAITMLY 1044
            PV  A+V G  +    PLQ  LF +  + LR LGG I+ +  P V ++ L+   S   V  D+ G+  A+ AG  E A  +                         RP  V GF+LV  RLV +PA    +          + +  +  LIL V   MP+A I+I LLH+  + R A  IS L V+QYAAS +T++   + ++ ++Y
Sbjct:  784 PVNAALVVGTAVGMARPLQKALFVSRTSPLRALGGTIELLASPVVCLAILITGASFANVEFDSIGSDDAAVAGPKEEAKALAAADPELVEAAPPAKKSALDALRGVRP-IVAGFILV--RLVFVPATVVAL---ETLLPRALPQKPIGRLILHVSSGMPSAQILIILLHKFGMSRAAADISFLFVFQYAASILTMTVLISLSLQVVY 984
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1263.2177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5J8G0_9PHAE1.600e-19490.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FW24_ECTSI1.430e-8791.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JAX8_9PHAE6.340e-5247.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FW26_ECTSI1.520e-5151.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J918_9PHAE1.210e-1855.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J2SPR5_9STRA4.000e-830.81Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
R1DD74_EMIHU2.010e-628.04Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
F0XVW1_AURAN9.280e-631.40Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1263contigEcto-sp13_S_contig1263:550..4239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score204.5
Seed ortholog evalue6e-50
Seed eggNOG ortholog2880.D7FW25
Model size1880
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2E8NN@1,2SF47@2759
Cds size789
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1263.2177.1prot_Ecto-sp13_S_contig1263.2177.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1263 808..3406 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462674.1855159-UTR-Ecto-sp13_S_contig1263:549..8071681462674.1855159-UTR-Ecto-sp13_S_contig1263:549..807Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1263 550..807 +
1681462674.228251-UTR-Ecto-sp13_S_contig1263:3406..42391681462674.228251-UTR-Ecto-sp13_S_contig1263:3406..4239Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1263 3407..4239 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462674.1947193-CDS-Ecto-sp13_S_contig1263:807..11611681462674.1947193-CDS-Ecto-sp13_S_contig1263:807..1161Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1263 808..1161 +
1681462674.2028985-CDS-Ecto-sp13_S_contig1263:1714..18941681462674.2028985-CDS-Ecto-sp13_S_contig1263:1714..1894Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1263 1715..1894 +
1681462674.210818-CDS-Ecto-sp13_S_contig1263:2472..25891681462674.210818-CDS-Ecto-sp13_S_contig1263:2472..2589Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1263 2473..2589 +
1681462674.2195137-CDS-Ecto-sp13_S_contig1263:3268..34061681462674.2195137-CDS-Ecto-sp13_S_contig1263:3268..3406Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1263 3269..3406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1263.2177.1

>prot_Ecto-sp13_S_contig1263.2177.1 ID=prot_Ecto-sp13_S_contig1263.2177.1|Name=mRNA_Ecto-sp13_S_contig1263.2177.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=263bp
MAQTGHGGGGDADASEVASIPRRRKENKVVADLLVIEEGNAIDGGGARGS
GTDDVNGGRGGDSEGPWEEAKHRAWALLVSPVIVAVVAGIVICTIAPLQD
MLFHNPQALLRPLGGAIQAVGVPTVTVSSLVMAGSLVAVSADADGAASPA
GGDETAVPIWRRPRFVTGFLLVFLRLVAIPAAFFGIFWVAKTYGSVMGEN
RLMHLILLVEFAMPTATIMIPLLHQIRLPRTAGYISRLLVWQYAASSITV
SFWTACAITMLY*
back to top

mRNA from alignment at Ecto-sp13_S_contig1263:550..4239+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1263.2177.1 ID=mRNA_Ecto-sp13_S_contig1263.2177.1|Name=mRNA_Ecto-sp13_S_contig1263.2177.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3690bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1263:550..4239+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAACGAAGGTTGACGGCGGCAGGACTTCAGAGTGGGCGGGGGCGGGGGC
GGGGGGAGGAGACAGTGGCGCCGTAGATCCCCAAGCGAGCGAAGCAGCAG
CAGCAGGCGATGAAACGGGGATTGTCGGAGCGGGCACCGAATCGGGAACA
GGAGCAACGGGAACGGGTGCCAAGAACCATGGCTCTCCAGTCGGTTGGCT
GCACAGTCGCGAGGTGGCGGTGGTATCATCACCCGTTCGAAGAGATCAAC
CAACTCTCATGGCGCAGACTGGACATGGGGGTGGCGGAGACGCAGACGCT
AGTGAGGTTGCCTCGATACCACGGAGGCGAAAGGAGAACAAAGTAGTGGC
GGACCTCCTTGTTATAGAGGAGGGCAATGCCATTGACGGCGGCGGCGCTC
GCGGCAGCGGCACCGACGATGTGAACGGTGGTCGTGGTGGTGACAGCGAA
GGGCCGTGGGAAGAGGCGAAGCACCGGGCGTGGGCTTTGTTGGTTTCGCC
TGTGATCGTGGCAGTCGTAGCGGGCATCGTGATATGCACGATCGCACCCC
TCCAGGACATGCTGTTCCACAACCCGCAGGCGCTTCTGCGCCCTCTGGGA
GGAGCAATCCAGGTGCTCAGTAGCAGTACTGCTGCGCGATTCTCCCACAG
AAAACCGCCCTCCCGTCACATGTCGGGGTCGAACAGAGAGAGAGGCTTGG
GTTATTGGAGACACATTTAGAGAGTGCCTAGGCTCAGCAGAGCGAAACGC
GCAAGTCCGTGACAATGGTCCACTCTGATCTCGGTTCAACCGGAGCCGAA
ATTGTGTTGTTGGTCGTTTCGTCCCGAGAAAACCGGAAAGTTCTGCCAGC
GACAGAACAGTGCCGCTAGAACAGAAGCCCGACTTTTCTGATCTCTTCGG
TGCCCGAGAAATCAGCCGGACAAACTTTCTTTTCCGCAATCCTTGTGTCA
CGCGGTCAATATTTCGCCGCATCAGGAAAAGAACGCTCGCACGAGAACCA
TGAATGTACGCGAGTCAGACCGCATAAAGAGCCCTTCCGGCCCCCCGCCG
ACAGTCGTCGACCTCTTGCGATTGCCAATATCTTCCTGTTGTCACTCCGG
CATGTCACCGATACTTGCTTCGTTGTCACTCCGCATCACCAAATGGTTTG
TCGCTCCGGATCAAGGCGGTGGGTGTGCCTACGGTGACGGTTTCATCGTT
GGTGATGGCTGGTTCTCTGGTGGCGGTTTCGGCGGATGCCGACGGAGCGG
CATCACCTGCGGGGGGGGACGAGACCGCCGTGCCGATTTGGCGTCGACCC
CGATTCGTCACGGGGTTCTTGCTTGTCTTCCTCCGCCTTGTCGCTGTGAG
GTTGCGTGCTTCTTCCTTTATTGTTTTCTGAACATGTATAGCGCATGAAG
CAGTCCCCATACACTCGCGTTCCTCTGTTGATCTTTGTGTCGGTGGCTGT
GTATGTGTGTGATGTTTTTCGAGAGACAGGTTGTCAGCAGCGAGCGAACA
CGTTCCGTACAGCGGAAAGAAGGTGCGATGACGACTGCTGTCGTTGTTTA
GGTGGGGGTCTCTCGTTCGTTGGCAGTCGTCTCGGCCACCTCCTCAAGCG
CCATTTTCCTACCAGCACACACGGCGCGGAAGGCGAAATCCGAGCACAAC
GAGTGAACTGGGCGAAACGTCAAGTTGTGTCGCGATTTCAAACGCGAAGA
AGGTTGTGCGGCCACCGACCACTCAATCAGAGAGAAGAAAGGACCGAGCA
GACGTGGATGTGCTCCTCGCGTAAATGAGAAGGACGGGTTGGACGGGGTG
GAGAAAAGCCCCGTGCAACCGCAGTGCTACCCAATGAGATTCCAGCTCTG
TGTCTTCTTGTGACAGTTCCAGCCTACGTTTGTCTCTTGCGCCGAATCGT
GTGGCGTCACGTGTGGTGCTCAGATCCCCGCTGCGTTCTTCGGCATTTTC
TGGGTGGCGAAGACGTACGGCTCGGTGATGGGCGAGAACCGGTTAATGCA
CCTCATCCTGTTGGTGGAGTTCGCCATGCCTACGGCGACGGTGCGAAGGC
TGGTGTTTCCAATAGGCTGCCGTAGTTGTGCTTCCTTTGTATTGTCTGTC
CACCGGTGGGACTAGATCGGAGCCTACCTTGAGCTCGTAAAACCTTTCGC
TATGATCATGCTACAGCAGCATCAAAAAGAATAGAATGTTAGCACGCATA
TGGTATGTAGGTCGGTTGAGAAACACGACACTTCCCCATTGGTATGTGTG
AGCGGTGGCCGGACCATGCACACCCTCTCTTGTTTGCTGTTTTTTGTTAG
TTTATGGCACTTCTCCGCCGATGTCGCCCTGCGTAAACGAACTCCAAACA
CCACTCCGACCTGGCCGTCTTGCAACCGGTAGTCGAACCTTGTAGACTTT
ACATCGTACATTTGATCCGCGCAAGTCCAATCCTCCTTCGAGCCACTGGT
GCCGCTGTCGATTGGGTAGGTTCTGGGAAGGCGTTAGGACATGACTACTT
GCTGACAATGTCCGAGAGATCGAGCCTAGTCCGTTCGAAGTAGATGACAT
GCTTGACGCAGCAGTTGCAGGCGATAGTCGACTTGTATAATGAAAATTAC
GTTTTCCGCTGCTTTGAGACTGTAGCCTTGTTTAGTCATGACTTTCTCTT
CCATTCGTCGTCGATAAAATTTCGAGCATTGCATTTGCACCAAATATTTT
TTTCCCCGTGTCGTGGCAGATCATGATCCCCCTCCTTCACCAGATTCGGT
TGCCAAGGACGGCGGGCTACATCTCGCGACTACTTGTGTGGCAGTACGCA
GCGTCGAGCATAACCGTGAGCTTCTGGACCGCCTGCGCCATAACGATGCT
GTATTAAGGAGCTACGGACAGCGCATGCCGACGTTTATGGGCGGATTTTC
TCTAATTAGTTGCTCCCCACGTGTTTTCGGGGCAGCACAAAGGGACGCTG
ATAGAGGGTCGGGTCTTTGTCCTCCTGATCACTTTGACAGAACTTGGTTG
GAATAGCTGTCCTCGTGTGGCAGGCGGGAGTGGGGGCGGGGCTCGTATCC
CCGAGCCAATAACATGATCCAGCATCGACCACAAAACGCATTTTGCGTGT
AGACTTGACCCGCAACCATTTTTGATCTTGCTTGGTGTGCTCGCGTTGAG
GTCCGTTGCTGGGGGAAAAGAAGGCCAGGCGGGAGGAGGAGGAAGTTGTT
GATTGCTCCCTCCTGGTCATGCGTACAAACTGCTCTGTGCTCGTTTGGTT
GCTACGGGTACCATGACCACTCTTGTTATTTAACTGTATCGTCATATCGG
TTTCTTGCGCCTTCCGGTGTAGGATAGGACGCACCAGCGTGTCCCGCACA
GGAGGAAGAGCCCTGCAGGGTTTGTTTTACTTTTTTTTCTCCGGTCTCCT
TCTGCGGTGCTTGCTTCCATTACCTTCATTTTGACGGCGAGAAGGAGTCA
GCCACCCCATTCCCTCGTCGAGGGGCGTTGGGTCGAAACTTGTGGGCATG
CACGACGGTTTATTGTGTGGTACCATGAGTACTTGCTTTGAAAGTACTTC
ATCGATGTTTGCGGTGAAGTACAAGTAATTGTTTTCAGTCAGTTCTTAGG
GGGAAGATCGAACAACGAGACGCTGGCTTTTACGAAGCTGTCTCTTCGAA
AGCTTAGCTGAGCTGGGCTATTGGAGACGTTGAATAAGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1263:550..4239+

>mRNA_Ecto-sp13_S_contig1263.2177.1 ID=mRNA_Ecto-sp13_S_contig1263.2177.1|Name=mRNA_Ecto-sp13_S_contig1263.2177.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=789bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1263:550..4239+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCAGACTGGACATGGGGGTGGCGGAGACGCAGACGCTAGTGAGGT
TGCCTCGATACCACGGAGGCGAAAGGAGAACAAAGTAGTGGCGGACCTCC
TTGTTATAGAGGAGGGCAATGCCATTGACGGCGGCGGCGCTCGCGGCAGC
GGCACCGACGATGTGAACGGTGGTCGTGGTGGTGACAGCGAAGGGCCGTG
GGAAGAGGCGAAGCACCGGGCGTGGGCTTTGTTGGTTTCGCCTGTGATCG
TGGCAGTCGTAGCGGGCATCGTGATATGCACGATCGCACCCCTCCAGGAC
ATGCTGTTCCACAACCCGCAGGCGCTTCTGCGCCCTCTGGGAGGAGCAAT
CCAGGCGGTGGGTGTGCCTACGGTGACGGTTTCATCGTTGGTGATGGCTG
GTTCTCTGGTGGCGGTTTCGGCGGATGCCGACGGAGCGGCATCACCTGCG
GGGGGGGACGAGACCGCCGTGCCGATTTGGCGTCGACCCCGATTCGTCAC
GGGGTTCTTGCTTGTCTTCCTCCGCCTTGTCGCTATCCCCGCTGCGTTCT
TCGGCATTTTCTGGGTGGCGAAGACGTACGGCTCGGTGATGGGCGAGAAC
CGGTTAATGCACCTCATCCTGTTGGTGGAGTTCGCCATGCCTACGGCGAC
GATCATGATCCCCCTCCTTCACCAGATTCGGTTGCCAAGGACGGCGGGCT
ACATCTCGCGACTACTTGTGTGGCAGTACGCAGCGTCGAGCATAACCGTG
AGCTTCTGGACCGCCTGCGCCATAACGATGCTGTATTAA
back to top