mRNA_Ecto-sp13_S_contig12629.2175.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12629.2175.1
Unique NamemRNA_Ecto-sp13_S_contig12629.2175.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12629.2175.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 9.740e-7
Identity = 31/64 (48.44%), Postives = 39/64 (60.94%), Query Frame = 2 
Query:  209 TCSNGFPGVESENGKTCCLTSCGFCAGDGCSNQGN---ATDCCATEISLYGEECDIAGSAPCHI 391
            TCSNG PG++S+N   CCL  CG C G  C   G    A +CC ++I  +GE C IA  APC+I
Sbjct: 1272 TCSNGIPGIQSDN--ACCLAECGACGGSDCDEFGGGLGADNCCVSDIVEHGEPCSIALEAPCYI 1333
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12629.2175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJ68_ECTSI9.740e-748.44WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12629contigEcto-sp13_S_contig12629:485..3747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score75.1
Seed ortholog evalue4.8e-11
Seed eggNOG ortholog2880.D7FJ68
Preferred nameMTPAP
Model size3238
KEGG koko:K08342,ko:K16462,ko:K17478,ko:K18060
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.importin-alpha family protein binding
EggNOG OGsCOG0086@1,KOG0260@2759,KOG4725@1,KOG4725@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-13_000690.1
EC2.7.7.19
Cds size690
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462674.0838559-UTR-Ecto-sp13_S_contig12629:484..5421681462674.0838559-UTR-Ecto-sp13_S_contig12629:484..542Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12629 485..542 +
1681462674.106154-UTR-Ecto-sp13_S_contig12629:1232..34191681462674.106154-UTR-Ecto-sp13_S_contig12629:1232..3419Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12629 1233..3419 +
1681462674.1153328-UTR-Ecto-sp13_S_contig12629:3444..37471681462674.1153328-UTR-Ecto-sp13_S_contig12629:3444..3747Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12629 3445..3747 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462674.0963185-CDS-Ecto-sp13_S_contig12629:542..12321681462674.0963185-CDS-Ecto-sp13_S_contig12629:542..1232Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12629 543..1232 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12629.2175.1prot_Ecto-sp13_S_contig12629.2175.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12629 543..1232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12629.2175.1

>prot_Ecto-sp13_S_contig12629.2175.1 ID=prot_Ecto-sp13_S_contig12629.2175.1|Name=mRNA_Ecto-sp13_S_contig12629.2175.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=230bp
MVIDDDVDGADTVAAPAAAAGTLLLLLCFDTNPAAALATAAAAAATDADS
TCSNGFPGVESENGKTCCLTSCGFCAGDGCSNQGNATDCCATEISLYGEE
CDIAGSAPCHIVTPEEDGPEHTLVYFTLFFIIPFLVIALVCNATFPRWCR
GRDPDAALDEAAATAHLHGHNTSPRRVPRPRRKTATVAGEEAIEAATGAE
AVKICEASAATPTPSHHGDTPFVRLPRVE*
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mRNA from alignment at Ecto-sp13_S_contig12629:485..3747+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12629.2175.1 ID=mRNA_Ecto-sp13_S_contig12629.2175.1|Name=mRNA_Ecto-sp13_S_contig12629.2175.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3263bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12629:485..3747+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTGACGAACCTGTTGCTGCTGCTGCTGCTGCTAATGATGATGATCAGAT
GATCATAGATGGTCATAGATGATGATGTTGATGGTGCTGATACTGTTGCT
GCCCCTGCTGCTGCCGCTGGTACTTTGCTGCTGCTCTTGTGCTTCGACAC
GAATCCTGCTGCTGCTCTCGCTACTGCTGCTGCTGCTGCTGCTACAGACG
CTGACTCCACGTGCAGCAACGGGTTCCCGGGCGTGGAGTCCGAAAACGGC
AAAACCTGCTGCCTCACGAGCTGCGGCTTCTGCGCGGGGGACGGGTGCTC
CAACCAGGGCAACGCCACCGACTGCTGCGCCACCGAGATCTCCCTGTACG
GAGAAGAGTGCGACATCGCCGGGTCCGCTCCCTGCCACATCGTCACCCCC
GAAGAGGACGGCCCCGAGCACACCCTCGTGTACTTCACCCTTTTCTTCAT
CATCCCTTTCCTGGTGATCGCCCTGGTGTGCAACGCCACCTTCCCCCGCT
GGTGTAGGGGCAGGGATCCCGACGCGGCGCTTGACGAGGCGGCGGCGACG
GCGCACCTCCACGGGCACAACACCTCGCCCCGCCGGGTTCCACGACCGCG
ACGCAAGACCGCCACGGTTGCCGGCGAGGAGGCGATAGAGGCTGCTACGG
GGGCGGAGGCGGTGAAGATATGCGAGGCTTCCGCTGCGACTCCAACGCCA
TCACACCACGGGGATACACCGTTCGTACGCCTTCCCCGTGTAGAGTAGGT
GGCGCTGTACAGTGGCGTGTTGGGGCAAGGGGAGAATGTTCCATTGTTCA
GGGCAGTTGGGGGCCACTATTCGACATATGTGGGGTGCACGCAAGTGTTG
AGATTTGTGAAAAGAGATTTTGATGCCACTGCATCGGCAGTTCCGCTATT
CAAGTTGCCACTGTATCGGGCCACCTACTGTATACCGAACTATTCGCACT
GTAGATAGCTGGCGGTGTGATAAACTGCCCGTCCGCCTCTTCCAGATACA
GAAGTTTTTTTGCGGTAGAAAGCTTTGGGTAGTATGGTGTAGACACGTCA
CAGTGATCCCCCCTGCTTTCTTCCTACAAACCGACCTACCGTGTACGATA
CGACGCAAGACAGCAAACCCCCCTGGACCATTTTTTGCGGTCGATTACGC
CACGAAGAAAGAGGAGGCATAAACGAAACGATATATTTTCGGGAAAGCTC
TCGACCAGACAGCTTCAACGCCTCGGCCGTTTTTGGCGCTGCGACTCTTT
CTGCTGTCGATGAACCCAGCTTTGAAAATCGGTCCATGGAGTGTGTTTTT
CTGCGTCATGTCGTATACGGTATTCACTTGGTGGATAGCTTGGGTGCGGG
CGTAGAGACTCTCGGTGGCGGTGTGATGCACCACGGTTACACCGCGGATG
TTCTCTCCATGCTGTCAATACTCGTACGGTAAATAGGTCGGTAGAACAGT
TTTTTTGTGCCCGGGCTGATCCCTCGTGGTGCATGCATTCCCGGTAGTAC
ATGTTTGGTTGTCCGCGCTGTTTGGGTTTGTTCGTTGGCGTTGTAACAAG
TCATTGTTTTGAGTGTCGACGTTCTGCGCGCCAAGAGGGACGTGATTTTT
TTGCCGTGGTCGCGTGAATTTCCCCTCGAAAGTGTTTGCAATTGTTAGTC
ATTTACGGTCAGTCTCCGGGAAAGTTGCGGACGTCGGAAGCCATAGCATC
ATGTAGCGATACATTTGAGGATCTCGCTTACATGTTTTGCTTTCTGTTGG
TTGTTGTGTTGCGTTCAGTTGATCATGTCGCGAATGTGGTAGCGGCATCC
CTTGCTGTTCCGCTAGCAGACCACGGCCTCAACAAGCGACGTCACATGCC
GAAGAGCGGAATTAGTTCCGAGAATTTTGTGTTGTGGTTTTATTGCGGAT
TGTTGTTCATTTCATTTCTCATGTCGCGATTGTGGCGGTGGTTCTCCTTG
TTAGCTTTGCGTGTCCACCCCCTCAAAAATCGACTTCAGCTGCGGGAGAG
AGGGAGAGAGAGAGCGAGCGGTAACAATTTTTAGGATCTTGTGTCTAGTT
GGCTTCTTGCCTTGTCAGGTTCTTCCGTGTTCTTCTTTGTCTTATTGTGT
CGCGAATTTGGTGGTGATTTCCTTGTTAGCTTAGCGTGTCCACCCCAAAA
AACGAGAGCCGCATCATTGGAGAACCAGATTCGCCCTGCTGGGTTAGGTT
TTAGAAAGGGGCATGTTCTCTTGTCTAAGCACGGAGCGTGTAGAGGGGAA
CCGAGGGCCCCAGACTCTCTGCCGGTGATTTTAATTGGCATGCGGACCCT
TCGTGTCCTATTCATCTATGTGTTTCTCATTTCAGGGTAAGTTAGCCTGT
GGCCGCGGGGGAAAATCGCACGGTCAAGTGTTAAGATCATTGCGGACAGA
TGGAGGCACTAGGTAGAGAGATCGGGACGGTTCTTTAGTGTGAAGGTAAC
ATTACCAAAGATCTGAACTTGAGGTGCCCACCGCCATGTGAAGGTGGCCT
GGCTTGAGTTCCGATGAGTCCGTCTCACAAGCAATCGACGCGCACGATTG
GCAAGGGATTCTTGGAATTTTGCGAAACCGCGCAACCGTTTGTTTCAGTG
CCGTCGGTTACGGCAAATGAAACAGATTGCTTACTTACGCGTAAACGCCA
ATTTTCGGCAACTTACGCCAGCGATAGGTAACACCCGAGGCCCTGAAAAA
AACGGAGGGGGACGTTGAATCAGGATCCCCGATTTCTCGCTGGTTGCGCA
AGCCAGACGCCGGAAAAGTGCCAACGACAACACCCAACTAAGCCCCCCAG
GAGTAGCCTTCCCAGGGTTTTTCTATAAAGTGAACATGTTGGATGAAGAA
TGCAATCGGGGAAGTCGAGTAACAGGGTTAGGGATAAGGCCTGCGTACCC
GCTTCTTGCTCTATTTCCTAGCAGTAGACGTAGCGTTGTTGCGAATGCGG
TCCAACCCCCCAACTTTTTTTTTTTTTCCTGTGTGTGTGTATCTCGACGA
AAGGCGTCCACAGATGTAACCAAGGGGTACACAGCGAGCGATTATTTGAG
AGAGATGTTTTTTGAAAGATTTGCGAGCAAAGGAAGCATGCCAAAGAAGC
AGAAAATGAGCGAACACCTTACGAGCAGATGACCGCTTGATCTCTAGAGG
GCTAACATAGCCGCACGTGCGTTGGGGAGTTTTCATGGCCGCGCCGTCCC
TCGCCCGGCGTCGGCCATGGGTTCGTGTGGGGCACTTTGGCGATCTCTGG
TAATAGTGTTGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12629:485..3747+

>mRNA_Ecto-sp13_S_contig12629.2175.1 ID=mRNA_Ecto-sp13_S_contig12629.2175.1|Name=mRNA_Ecto-sp13_S_contig12629.2175.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12629:485..3747+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCATAGATGATGATGTTGATGGTGCTGATACTGTTGCTGCCCCTGC
TGCTGCCGCTGGTACTTTGCTGCTGCTCTTGTGCTTCGACACGAATCCTG
CTGCTGCTCTCGCTACTGCTGCTGCTGCTGCTGCTACAGACGCTGACTCC
ACGTGCAGCAACGGGTTCCCGGGCGTGGAGTCCGAAAACGGCAAAACCTG
CTGCCTCACGAGCTGCGGCTTCTGCGCGGGGGACGGGTGCTCCAACCAGG
GCAACGCCACCGACTGCTGCGCCACCGAGATCTCCCTGTACGGAGAAGAG
TGCGACATCGCCGGGTCCGCTCCCTGCCACATCGTCACCCCCGAAGAGGA
CGGCCCCGAGCACACCCTCGTGTACTTCACCCTTTTCTTCATCATCCCTT
TCCTGGTGATCGCCCTGGTGTGCAACGCCACCTTCCCCCGCTGGTGTAGG
GGCAGGGATCCCGACGCGGCGCTTGACGAGGCGGCGGCGACGGCGCACCT
CCACGGGCACAACACCTCGCCCCGCCGGGTTCCACGACCGCGACGCAAGA
CCGCCACGGTTGCCGGCGAGGAGGCGATAGAGGCTGCTACGGGGGCGGAG
GCGGTGAAGATATGCGAGGCTTCCGCTGCGACTCCAACGCCATCACACCA
CGGGGATACACCGTTCGTACGCCTTCCCCGTGTAGAGTAG
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