mRNA_Ecto-sp13_S_contig12623.2171.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12623.2171.1
Unique NamemRNA_Ecto-sp13_S_contig12623.2171.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12623.2171.1 vs. uniprot
Match: D7FJ08_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ08_ECTSI)

HSP 1 Score: 291 bits (745), Expect = 3.140e-99
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = 1 
Query:  109 MVLRWHHARKEYVFEWRDWPLWENEAIGRKLSSEGANAVVEELVRTGHAEWNDAGKSMVTLMWHSAEEIAAKLFDFVRKHDMVGSVFTVYELHQGDEVLGTDFFGMDEGLFRKALSVLESQERVVMFKGATSEEDGVKFLG 531
            MVLRWHHARKEY+FEWRDWPLWENEAIGRKLSSEGANAVVEELVRTGHAEWNDAGKSMVTLMWHSAEEIAAKLFDFVRKHDMVGSVFTVYELHQGDEVLGTDFFGMDEGLFRKALSVLESQERVVMFKGATSEEDGVKFLG
Sbjct:    1 MVLRWHHARKEYMFEWRDWPLWENEAIGRKLSSEGANAVVEELVRTGHAEWNDAGKSMVTLMWHSAEEIAAKLFDFVRKHDMVGSVFTVYELHQGDEVLGTDFFGMDEGLFRKALSVLESQERVVMFKGATSEEDGVKFLG 141
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BLAST of mRNA_Ecto-sp13_S_contig12623.2171.1 vs. uniprot
Match: A0A835YLA2_9STRA (ESCRT-II complex subunit-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLA2_9STRA)

HSP 1 Score: 244 bits (624), Expect = 2.810e-80
Identity = 111/176 (63.07%), Postives = 137/176 (77.84%), Query Frame = 1 
Query:    1 MADAGFEKPEFYNFPPFFTLQPVLATREKQLRLWCDMVLRWHHARKEYVFEWRDWPLWENEAIGRKLSSEGANAVVEELVRTGHAEWNDAGKSMVTLMWHSAEEIAAKLFDFVRKHDMVGSVFTVYELHQGDEVLGTDFFGMDEGLFRKALSVLESQERVVMFKGATSEEDGVKFL 528
            M +A F+ PEFY+FPPFFTLQPVLATREKQL+LWCDMVL +H ARK Y F WRDWPLWEN AI R+L   GA AVV ELVRTGHAEW D+GK+ ++L W +  + AA+L+++ R   +VGSV TVYELHQG++   T F GM+EG+ RKA++VLE+  R V+F+GATS EDG KF 
Sbjct:    1 MGEADFQVPEFYSFPPFFTLQPVLATREKQLKLWCDMVLAYHKARKAYAFAWRDWPLWENRAINRRLDEAGAQAVVAELVRTGHAEWQDSGKTSLSLFWDTPADTAARLYEWARSTGLVGSVVTVYELHQGEDTRETQFHGMEEGVLRKAIAVLEADGRAVLFQGATSTEDGFKFF 176
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BLAST of mRNA_Ecto-sp13_S_contig12623.2171.1 vs. uniprot
Match: A0A7S2EJ37_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EJ37_TRICV)

HSP 1 Score: 186 bits (473), Expect = 2.640e-57
Identity = 86/177 (48.59%), Postives = 120/177 (67.80%), Query Frame = 1 
Query:    1 MADAGFEKPEFYNFPPFFTLQPVLATREKQLRLWCDMVLRWHHARKEYVFEWRDWPLWENEAIGRKLSSEGANAVVEELVRTGHAEWNDAG-KSMVTLMWHSAEEIAAKLFDFVRKHDMVGSVFTVYELHQGDEVLGTDFFGMDEGLFRKALSVLESQERVVMFKGATSEEDGVKFL 528
            M+ +GFE PEF++FPPFFT+QPVL TREKQ+ LW +++LR+H  RK       D PLW N  IGRKL  EG  AV+++ V++GH EW D   K+   ++W   E++A+ ++D+   +  + SV TVYELH G++V G  F G DE L R+AL++LE Q +  +FKG TS EDG+KF 
Sbjct:    1 MSLSGFELPEFFSFPPFFTIQPVLVTREKQMGLWRELILRYHTDRKIKTLVVHDCPLWSNPEIGRKLGQEGVKAVMDDFVKSGHGEWEDPDVKTRCRILWRKPEQLASDIYDWADANGYINSVCTVYELHSGEDVNGMSFQGADEELLRRALTILEDQGKCTVFKGETSSEDGIKFF 177
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BLAST of mRNA_Ecto-sp13_S_contig12623.2171.1 vs. uniprot
Match: W7U3C0_9STRA (Vacuolar protein sorting-associated protein 25 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3C0_9STRA)

HSP 1 Score: 185 bits (469), Expect = 1.330e-56
Identity = 81/169 (47.93%), Postives = 119/169 (70.41%), Query Frame = 1 
Query:   25 PEFYNFPPFFTLQPVLATREKQLRLWCDMVLRWHHARKEYVFEWRDWPLWENEAIGRKLSSEGANAVVEELVRTGHAEWNDAGKSMVTLMWHSAEEIAAKLFDFVRKHDMVGSVFTVYELHQGDEV-LGTDFFGMDEGLFRKALSVLESQERVVMFKGATSEEDGVKFL 528
            PE++ FPPFFTLQPVL TR+ QL+LW ++VL+WH A+   + +  +WPL+ N AI R L  +G   VV+ LV +GHAEW D  ++   ++W SA+E+AA +  F+R + M G+V+TVYEL  GDE+ +G DF G +  +FR+AL +LE Q +  +FKG++ E DG+KF+
Sbjct:   13 PEYHGFPPFFTLQPVLETRKMQLKLWRELVLKWHQAKGVQILKLNEWPLFANPAINRTLPLDGRREVVQSLVSSGHAEWKDDSRTTALVLWRSAQEVAASILTFIRDNGMAGNVYTVYELRAGDEITVGADFHGTEPTIFRRALEILERQGKAALFKGSSEEGDGIKFV 181
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BLAST of mRNA_Ecto-sp13_S_contig12623.2171.1 vs. uniprot
Match: A0A7S2XTF5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XTF5_9STRA)

HSP 1 Score: 183 bits (465), Expect = 4.330e-56
Identity = 86/177 (48.59%), Postives = 118/177 (66.67%), Query Frame = 1 
Query:    1 MADAGFEKPEFYNFPPFFTLQPVLATREKQLRLWCDMVLRWHHARKEYVFEWRDWPLWENEAIGRKLSSEGANAVVEELVRTGHAEWNDAG-KSMVTLMWHSAEEIAAKLFDFVRKHDMVGSVFTVYELHQGDEVLGTDFFGMDEGLFRKALSVLESQERVVMFKGATSEEDGVKFL 528
            M  A FE PEFY+FPPFFT+QPVLATREKQ+ LW +++L++H  RK       D PLW N  IGR+L+ E   AV+ + V++GH EW DA  ++   ++W   E++A+ ++D+   +  + SV TVYELH G++V G  F G DE L R+AL +LE Q +  MFKG TS EDG+KF 
Sbjct:    1 MGTAKFEYPEFYSFPPFFTIQPVLATREKQMGLWRELILKYHTDRKIKTLVLHDCPLWMNPDIGRELNQEAIQAVMNDFVKSGHGEWEDADVQTRCRILWRKPEQLASDIYDWAMANGYINSVCTVYELHSGEDVNGMSFEGADEELLRRALGILEDQGKCTMFKGDTSSEDGIKFF 177
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BLAST of mRNA_Ecto-sp13_S_contig12623.2171.1 vs. uniprot
Match: A0A6U3ZAU0_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3ZAU0_9STRA)

HSP 1 Score: 181 bits (458), Expect = 4.990e-55
Identity = 83/177 (46.89%), Postives = 118/177 (66.67%), Query Frame = 1 
Query:    1 MADAGFEKPEFYNFPPFFTLQPVLATREKQLRLWCDMVLRWHHARKEYVFEWRDWPLWENEAIGRKLSSEGANAVVEELVRTGHAEWNDAG-KSMVTLMWHSAEEIAAKLFDFVRKHDMVGSVFTVYELHQGDEVLGTDFFGMDEGLFRKALSVLESQERVVMFKGATSEEDGVKFL 528
            MA A FE PEFY+F PFFT+QPVLATREKQ+ LW D++L++H   +       D PLW+N  IGR+L +E   AV+E+ ++ GH EW D   ++   ++W   E++A+ ++D+   +  + SV TVYELH G+++ G  F G DE L R+ALS+LE Q +  +FKG TS EDG+KF 
Sbjct:    1 MASANFEYPEFYSFKPFFTIQPVLATREKQMGLWRDLILKYHTELRIKTLVVHDCPLWKNPGIGRELDNESIMAVMEDFIKGGHGEWEDPDVRTRCRILWRKPEQLASDIYDWAEANGYINSVCTVYELHSGEDINGMSFEGADEELLRRALSILEDQGKCTIFKGDTSSEDGIKFF 177
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BLAST of mRNA_Ecto-sp13_S_contig12623.2171.1 vs. uniprot
Match: B7G749_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G749_PHATC)

HSP 1 Score: 179 bits (454), Expect = 1.840e-54
Identity = 82/170 (48.24%), Postives = 115/170 (67.65%), Query Frame = 1 
Query:   16 FEKPEFYNFPPFFTLQPVLATREKQLRLWCDMVLRWHHARKEYVFEWRDWPLWENEAIGRKLSSEGANAVVEELVRTGHAEWNDAGKSMVTLMWHSAEEIAAKLFDFVRKHDMVGSVFTVYELHQGDEVLGTDFFGMDEGLFRKALSVLESQERVVMFKGATSEEDGVKF 525
            F+ PEFY+FPPFFT+QPVLATREKQ+ LW +++LR+H  +K       D PLW+N+ I R+L       V+++  R GH EW DA K+   ++W + E++A  +  +  K+  VGSV TVYELH G++V G  F G DE L R+ALS+LE + +  +F+G TSEEDG+KF
Sbjct:    4 FQYPEFYSFPPFFTIQPVLATREKQMALWRELILRYHTEKKIKTLVVHDCPLWKNDNIKRRLQPGEIQEVLDDFCRHGHGEWQDANKTTCRILWRTPEQLATDIHQWAEKNGYVGSVCTVYELHSGEDVNGMSFQGADEELLRRALSILEDRGKCTIFRGETSEEDGIKF 173
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BLAST of mRNA_Ecto-sp13_S_contig12623.2171.1 vs. uniprot
Match: W2JSH0_PHYPR (Uncharacterized protein n=17 Tax=Peronosporaceae TaxID=4777 RepID=W2JSH0_PHYPR)

HSP 1 Score: 176 bits (447), Expect = 2.330e-53
Identity = 85/171 (49.71%), Postives = 114/171 (66.67%), Query Frame = 1 
Query:   16 FEKPEFYNFPPFFTLQPVLATREKQLRLWCDMVLRWHHARKEYVFEWRDWPLWENEAIGRKLSSEGANAVVEELVRTGHAEWNDAGKSMVTLMWHSAEEIAAKLFDFVRKHDMVGSVFTVYELHQGDEVLGTDFFGMDEGLFRKALSVLESQERVVMFKGATSEEDGVKFL 528
            F  PE+Y+FPPFFTLQPV ATREKQL LW  ++L +H A    +F+     L+EN  I R ++ +G  AVVE L+R GH  W D  K+   +MW    E AA+++DF ++H M+G+VFTVYEL+ G+E LGT+  GM+  L R+AL VLE + +  +  G T EEDGVKFL
Sbjct:    4 FSYPEYYDFPPFFTLQPVRATREKQLVLWQQLILEYHRAHDLPLFQPLASTLFENVKISRNMAQDGRMAVVEHLIRCGHGRWEDDTKTRCRIMWKKPAEWAAEIYDFAKEHGMLGNVFTVYELYAGEETLGTNIHGMEPWLLREALRVLEGEGKAAVIAGETCEEDGVKFL 174
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BLAST of mRNA_Ecto-sp13_S_contig12623.2171.1 vs. uniprot
Match: A0A8K1C878_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C878_PYTOL)

HSP 1 Score: 176 bits (445), Expect = 4.690e-53
Identity = 85/172 (49.42%), Postives = 117/172 (68.02%), Query Frame = 1 
Query:   13 GFEKPEFYNFPPFFTLQPVLATREKQLRLWCDMVLRWHHARKEYVFEWRDWPLWENEAIGRKLSSEGANAVVEELVRTGHAEWNDAGKSMVTLMWHSAEEIAAKLFDFVRKHDMVGSVFTVYELHQGDEVLGTDFFGMDEGLFRKALSVLESQERVVMFKGATSEEDGVKFL 528
             F  PE+Y+FPPFFTLQPV ATREKQL LW  ++L +H  + + +F+    PL+EN  I RK++S+G  AVVE L+R G+  W D  K+   +MW    E AA+++DF  +  M+G+V+TVYEL+ G+E LGT   GM+  L R++L VLES+ +  +  GAT EEDGVKFL
Sbjct:    3 AFSYPEYYDFPPFFTLQPVRATREKQLVLWKQLILEFHRTQGQPLFQPFTSPLFENAKISRKMASDGRLAVVEYLIRCGNVTWEDDTKTRCRIMWKKPAEWAAEIYDFATERAMIGNVYTVYELYAGEETLGTPVHGMEPWLLRESLKVLESEGKAAIIDGATLEEDGVKFL 174
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12623.2171.1 vs. uniprot
Match: A0A024FV78_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FV78_9STRA)

HSP 1 Score: 174 bits (442), Expect = 1.470e-52
Identity = 83/171 (48.54%), Postives = 115/171 (67.25%), Query Frame = 1 
Query:   16 FEKPEFYNFPPFFTLQPVLATREKQLRLWCDMVLRWHHARKEYVFEWRDWPLWENEAIGRKLSSEGANAVVEELVRTGHAEWNDAGKSMVTLMWHSAEEIAAKLFDFVRKHDMVGSVFTVYELHQGDEVLGTDFFGMDEGLFRKALSVLESQERVVMFKGATSEEDGVKFL 528
            F  PE+Y+FPPFFTLQPV ATREKQL LW  ++L +H AR   +F  +  PL+ N  I RK+ +EG  A++E L++ G+A W DA ++   L+W    E AA+L+DFV+   M+G ++TVYEL+ G+E LG+ F GM+    R AL +LE   +VV+  G T EEDGVKF+
Sbjct:    7 FTFPEYYDFPPFFTLQPVRATREKQLGLWKQLILDYHQARHLSIFSPQTSPLFANCKISRKMKAEGQTAIIEYLIQCGNAIWEDASETRCRLIWKKPAEWAAELYDFVKGRGMLGKIYTVYELYAGEETLGSQFHGMEPWSLRDALKILEEHGKVVLISGTTCEEDGVKFI 177
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12623.2171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ08_ECTSI3.140e-9999.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YLA2_9STRA2.810e-8063.07ESCRT-II complex subunit-domain-containing protein... [more]
A0A7S2EJ37_TRICV2.640e-5748.59Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
W7U3C0_9STRA1.330e-5647.93Vacuolar protein sorting-associated protein 25 n=2... [more]
A0A7S2XTF5_9STRA4.330e-5648.59Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A6U3ZAU0_9STRA4.990e-5546.89Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
B7G749_PHATC1.840e-5448.24Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
W2JSH0_PHYPR2.330e-5349.71Uncharacterized protein n=17 Tax=Peronosporaceae T... [more]
A0A8K1C878_PYTOL4.690e-5349.42Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024FV78_9STRA1.470e-5248.54Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12623contigEcto-sp13_S_contig12623:21..3276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score292.4
Seed ortholog evalue1.5e-76
Seed eggNOG ortholog2880.D7FJ08
Preferred nameVPS25
Model size534
KEGG rclassRC00004,RC00010,RC00131,RC01160
KEGG koko:K01904,ko:K01952,ko:K07442,ko:K08867,ko:K12189
KEGG ReactionR01616,R01943,R02194,R02221,R02255,R04463,R06583
KEGG Pathwayko00130,ko00230,ko00360,ko00940,ko01100,ko01110,ko01130,ko04144,map00130,map00230,map00360,map00940,map01100,map01110,map01130,map04144
KEGG ModuleM00039,M00048,M00137,M00350,M00410
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000429,GO:0000430,GO:0000433,GO:0000578,GO:0000814,GO:0001894,GO:0001932,GO:0001933,GO:0002009,GO:0002165,GO:0003002,GO:0003006,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005829,GO:0006355,GO:0006357,GO:0006403,GO:0006469,GO:0006508,GO:0006511,GO:0006605,GO:0006623,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0006886,GO:0006897,GO:0006914,GO:0006996,GO:0007032,GO:0007034,GO:0007154,GO:0007163,GO:0007175,GO:0007176,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007350,GO:0007351,GO:0007389,GO:0007444,GO:0007483,GO:0007484,GO:0007485,GO:0007548,GO:0007552,GO:0007560,GO:0007584,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0008285,GO:0008298,GO:0008358,GO:0008593,GO:0008595,GO:0009056,GO:0009057,GO:0009605,GO:0009653,GO:0009790,GO:0009791,GO:0009798,GO:0009880,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009948,GO:0009952,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0009994,GO:0010008,GO:0010256,GO:0010468,GO:0010469,GO:0010556,GO:0010558,GO:0010563,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0010669,GO:0010941,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015865,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019941,GO:0019953,GO:0021700,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023057,GO:0030011,GO:0030154,GO:0030163,GO:0030539,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031400,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032509,GO:0032511,GO:0032984,GO:0032991,GO:0033036,GO:0033365,GO:0033673,GO:0034613,GO:0035088,GO:0035090,GO:0035112,GO:0035126,GO:0035215,GO:0035239,GO:0035282,GO:0035295,GO:0036257,GO:0036258,GO:0036452,GO:0042058,GO:0042059,GO:0042127,GO:0042221,GO:0042325,GO:0042326,GO:0042493,GO:0042592,GO:0042802,GO:0042803,GO:0042886,GO:0042981,GO:0043067,GO:0043086,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043328,GO:0043549,GO:0043632,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045013,GO:0045014,GO:0045184,GO:0045197,GO:0045199,GO:0045324,GO:0045450,GO:0045859,GO:0045892,GO:0045934,GO:0045936,GO:0045990,GO:0046015,GO:0046618,GO:0046661,GO:0046907,GO:0046983,GO:0047485,GO:0048468,GO:0048469,GO:0048477,GO:0048513,GO:0048519,GO:0048523,GO:0048563,GO:0048569,GO:0048583,GO:0048585,GO:0048599,GO:0048608,GO:0048609,GO:0048707,GO:0048729,GO:0048731,GO:0048803,GO:0048805,GO:0048806,GO:0048808,GO:0048856,GO:0048869,GO:0048871,GO:0050678,GO:0050680,GO:0050730,GO:0050732,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051338,GO:0051348,GO:0051503,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0060249,GO:0060255,GO:0060429,GO:0060562,GO:0060810,GO:0060811,GO:0061097,GO:0061099,GO:0061245,GO:0061458,GO:0061919,GO:0061984,GO:0061985,GO:0061986,GO:0061987,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070086,GO:0070727,GO:0070887,GO:0070925,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0080090,GO:0090598,GO:0097352,GO:0097708,GO:0098588,GO:0098657,GO:0098796,GO:0098805,GO:1901184,GO:1901185,GO:1901264,GO:1901564,GO:1901565,GO:1901575,GO:1902679,GO:1903506,GO:1903507,GO:1904669,GO:2000112,GO:2000113,GO:2000272,GO:2001141
Exons3
EggNOG free text desc.protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
EggNOG OGsKOG4068@1,KOG4068@2759
Ec32 ortholog descriptionESCRT-II complex, Vps25 subunit, N-terminal winged helix
Ec32 orthologEc-07_004870.1
EC2.1.1.219,2.1.1.220,2.7.11.1,6.2.1.12,6.3.5.3
Cds size534
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko01009,ko03016,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462673.8771336-CDS-Ecto-sp13_S_contig12623:20..1431681462673.8771336-CDS-Ecto-sp13_S_contig12623:20..143Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12623 21..143 -
1681462673.8914278-CDS-Ecto-sp13_S_contig12623:524..8551681462673.8914278-CDS-Ecto-sp13_S_contig12623:524..855Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12623 525..855 -
1681462673.9026144-CDS-Ecto-sp13_S_contig12623:3196..32761681462673.9026144-CDS-Ecto-sp13_S_contig12623:3196..3276Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12623 3197..3276 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12623.2171.1prot_Ecto-sp13_S_contig12623.2171.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12623 21..3276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12623.2171.1

>prot_Ecto-sp13_S_contig12623.2171.1 ID=prot_Ecto-sp13_S_contig12623.2171.1|Name=mRNA_Ecto-sp13_S_contig12623.2171.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=178bp
MADAGFEKPEFYNFPPFFTLQPVLATREKQLRLWCDMVLRWHHARKEYVF
EWRDWPLWENEAIGRKLSSEGANAVVEELVRTGHAEWNDAGKSMVTLMWH
SAEEIAAKLFDFVRKHDMVGSVFTVYELHQGDEVLGTDFFGMDEGLFRKA
LSVLESQERVVMFKGATSEEDGVKFLG*
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mRNA from alignment at Ecto-sp13_S_contig12623:21..3276-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12623.2171.1 ID=mRNA_Ecto-sp13_S_contig12623.2171.1|Name=mRNA_Ecto-sp13_S_contig12623.2171.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3256bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12623:21..3276- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTGATGCAGGTTTCGAGAAACCCGAGTTTTACAACTTCCCCCCCTT
CTTCACTCTACAGCCTGTGCTGGCGACCCGGTGAGTTCTCTTCTCTTTGT
GCTAATATTCCGCTTCTCTCTTTGTGCCAATTTCCACGAGGAAGGCATAG
AAACTCAAGCTGAGAATGAACCTGTGCACACATGGCGCCGCTTTTGTGTG
GAGATGGATAGAAGGCGCAAGTGGTGTGACCCTAGGCTGGCTGGTGTCTT
CAGATTAAAACCCGTACAGGCGTTCGGGTCTGCTCAAGTACCTTGTGCCA
GCCGTACCGATCAAACTGAATATTCCACACAAGCAGTGCACATGTTATAT
GCTCCCTTTTGTCACGCCGAAAATATATATGGTGCCCTTTACCCCCTACA
TTCATTTAGACGGGCTTTAATAGGTTTAATAGGTTCAACAGCAGTATTGC
AACAGCTCTTGCTTGTGGTGATCCAAAATTCTACCGAAGGGATACACTAC
GGTGTAAACACTGAATTCTCCCTTACACTGCTGCCTCTGTGTTTTCGCGT
GCGAGTATTTGGTTTGCTACTCGTTGAAGTTCTTCAGTCGATTATTTAGG
GACCCAGTGACCGTTGCAGACCCATGACGGGCGATGTGATGGCTATCCAA
TACTCTAGCCTGCGATATGGAGCTCTACATATATGTGTTGATATTCTGCT
GTGTGGCGAAGTTTCAGATGGCGTTCGCCACTTCATTTATGCATTTGTTC
GCCGACGACTCGCGTGACGTTGGCCTCCGAGAAACATAGAAAAGGCGAAG
TCTTCAAAGCAGTAAGCGATTACATGACGCAAAAAACTTACACTTTGTCA
TCAATGGCGCTGAAATCCTTTCGTACGATCGTGGCAAGCAATGGTCTACA
TGCATATGTAACAGGAGTACCAACGGTGCCAACAACGTGAATTGGAATGG
CTGAGCGGCATAAAATTTTGGAAGGGATCCGATTGAGCAGTGGCCAAAAT
CAGGTACAGGTACACCCGGTCCAAACACGACCATAGTCGGGTACCCCTAC
AAGATGCTGCTGGAGGCGACCGCATGACACCGTTTGATTGGCCGACGCCC
GCCCCTACCCGACCGCGACCGTCTTTCCACCGGGTGCATCCGATCTTGGC
TACTCACCCCCCGGAGGAGTACCCGGTTTTTCTTTCCCCTACCCGAAAAT
GGCGGGGCTGTTCGGCGAAAACCCACACGCACACAATCACGGGTAGGACG
CACACCGCTGGCCGCTAGTTTGTCACCAATGAGAAAGCAGCAGAAAGCAG
AGAATGTGCCTATCTTTTAGATGCGTCTCGCGTGTGTTGCATCTCGTGAG
TGAGGCCTTCATCCACAGCTCTTCTACATCATTTGCACCGACCGCCTGCC
TGATGCTGTTTCCCTCAAGCGAGAGTTCCACCACCGGCAGTGGGCCCGCC
CCCGCCCGCCGTCAGAACGTCCGAATTCGAGGGCAAGGCATTGCTGACGT
GTACTTGCGTGCATGTTATTTGGCCGAACAGCCCACCCTATTTCGCGTAG
GGGAAAGAAAAACCGGGTACCCCTCCGGGCCCTCCGGGAGGCGAGTAGCC
AAGATCGGGTGCACCCGGTGGAAATATCGTCGAGTTCGGGTAGGGGTGGG
CGTCGGCCGATCAGATAGTGTCATACGGGCGTTTCCAGCAGCGTCTTGTA
GGAGTACCCGATTATGACCGTGTTTGGACCGGGTGTACCAGATTTTGGTC
ACTACTCATCCAATTGCCTAGGTTACCTTTCGTATAGGCGGTAACTCCGG
TGATGTGCCGAAGGTGTACACTGGCGCACCGAAAAGATGGAACGAAAGAC
ACGTAACACTGCTTGACTCCCCACCAGCAAGGCAGCTTGACGTCCGTGTT
GTAAACTGGTTGCTGTGCGCTTTAAGCTTCGATACCGTTTCCTCTGGCGA
TGAGTCCGTGCAGGTCGGGTCATGAGAAACATGCCTTTCAAATGAGCATC
ATTCGAAGACATCCTCTGGCTACATAACGAGACCCCGAGGATTGCAGGAT
CTTTCCTCAGGAATCTTTCTGAGCTTATATTCTACCGTAGTCGTTCTCCC
GTAACAGGTTTCCACATACGTTGCTTCAATGATACGTATAGAGTAGGGCG
CGTGGAGGCGTTCTTCGCAGCGCCTTAACCACGGCGTCTGCATTTGGTTC
TGCTTGTCACCAGGAGCGCCATGTTTCTCCTCTCACTTTGTTTCTATACT
CTCTTCAAAGAGCAGGGCCTCGACTTTTCACCTACGAATATAGTGCCTCG
GCCAGCGCTTCAGCTGTGCCTATCTCTTCCGCTGTCGTCGCGGCTCGAAG
AGATTCGTGAGTTCCCTCAGGTACGAGTATTCACTACCGTGTCATCTATC
GATTTTGCCCACCTCGAACAGAGAAAAACAACTGAGGTTATGGTGCGACA
TGGTACTGAGATGGCACCACGCTAGAAAGGAGTACGTGTTCGAGTGGAGA
GACTGGCCGCTGTGGGAAAACGAAGCAATCGGACGAAAGCTAAGCAGTGA
GGGGGCGAACGCAGTCGTCGAAGAATTGGTTCGGACAGGCCACGCAGAGT
GGAACGATGCTGGAAAGTCCATGGTGACTCTAATGTGGCACAGCGCGGAA
GAGATTGCAGCTAAGCTGTTCGACTTCGTGAGGAAGCACGACATGGTCGG
CAGTGTTTTCACGGTGTACGAATTGCACCAAGGCGATGAGGTCTTGGGGA
CGGTAAGAGCTACTGCGTGTGTGGCTTGGGCCCATGAATCCATGAGCTGG
CTTCAGGTCTAGTATGGCCAAATGCATCAGCTGTCAATGGGTGTCGCGTT
GAGCGACGTCTTCATGGTCCTTGCCCTCTCGATGGTGTGTTAGCAAACCA
ACTTTTACAGCGGTACCAGGCTTTGACGAGAGCTCTCGACTCGTTTGCCG
AGAAGAGGGATTGTCTTTAATGCGATTATGTAGGTGGTACTGTAGTTTAG
CCCCCCTCAACAACACACGCTCTACTCAGGTTTGGTTTCCACGCGCAACG
ACTTTATTGTTCTCGTGCTGAACCAACTGAATTTGGAACACACCTTCGCA
ACTCTTTCTCACTCTTCATTTTGATGTGCGCAGGATTTTTTCGGGATGGA
TGAAGGGCTCTTCAGGAAGGCGCTATCTGTCTTGGAGAGCCAAGAGCGAG
TGGTGATGTTCAAGGGGGCGACTTCGGAAGAGGATGGAGTAAAGTTCTTG
GGATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12623:21..3276-

>mRNA_Ecto-sp13_S_contig12623.2171.1 ID=mRNA_Ecto-sp13_S_contig12623.2171.1|Name=mRNA_Ecto-sp13_S_contig12623.2171.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=534bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12623:21..3276- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTGATGCAGGTTTCGAGAAACCCGAGTTTTACAACTTCCCCCCCTT
CTTCACTCTACAGCCTGTGCTGGCGACCCGAGAAAAACAACTGAGGTTAT
GGTGCGACATGGTACTGAGATGGCACCACGCTAGAAAGGAGTACGTGTTC
GAGTGGAGAGACTGGCCGCTGTGGGAAAACGAAGCAATCGGACGAAAGCT
AAGCAGTGAGGGGGCGAACGCAGTCGTCGAAGAATTGGTTCGGACAGGCC
ACGCAGAGTGGAACGATGCTGGAAAGTCCATGGTGACTCTAATGTGGCAC
AGCGCGGAAGAGATTGCAGCTAAGCTGTTCGACTTCGTGAGGAAGCACGA
CATGGTCGGCAGTGTTTTCACGGTGTACGAATTGCACCAAGGCGATGAGG
TCTTGGGGACGGATTTTTTCGGGATGGATGAAGGGCTCTTCAGGAAGGCG
CTATCTGTCTTGGAGAGCCAAGAGCGAGTGGTGATGTTCAAGGGGGCGAC
TTCGGAAGAGGATGGAGTAAAGTTCTTGGGATAA
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