mRNA_Ecto-sp13_S_contig12622.2170.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12622.2170.1 vs. uniprot
Match: A0A6H5LD75_9PHAE (GDP-mannose 4,6-dehydratase n=6 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5LD75_9PHAE) HSP 1 Score: 373 bits (957), Expect = 4.230e-128 Identity = 177/180 (98.33%), Postives = 180/180 (100.00%), Query Frame = 1
Query: 10 QAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYLGNLDAKRDWGHARDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVEESFKYVGTEITWVGEGVEEYGHAKGDPENVLVKVDPRYFRPTEVELLLGDCTKAKKELGWVPEISFTELVKDMMKADIAHVDAGNEHL 549
+AYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYLGNLDAKRDWGHA+DYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVEESFKYVGTEITWVGEGVEEYGHAKGDPENVLVKVDPRYFRPTEVELLLGDCTKAKKELGWVPEISFTELVKDMMKADIA+VDAGNEHL
Sbjct: 183 EAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYLGNLDAKRDWGHAKDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVEESFKYVGTEITWVGEGVEEYGHAKGDPENVLVKVDPRYFRPTEVELLLGDCTKAKKELGWVPEISFTELVKDMMKADIAYVDAGNEHL 362
BLAST of mRNA_Ecto-sp13_S_contig12622.2170.1 vs. uniprot
Match: A0A4D9D4U1_9STRA (GDP-mannose 4,6-dehydratase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4U1_9STRA) HSP 1 Score: 269 bits (688), Expect = 5.970e-87 Identity = 125/179 (69.83%), Postives = 152/179 (84.92%), Query Frame = 1
Query: 10 QAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYLGNLDAKRDWGHARDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVEESFKYVGTEITWVGE--GVEEYGHAKGDPENVLVKVDPRYFRPTEVELLLGDCTKAKKELGWVPEISFTELVKDMMKADIAHVDAGN 540
+AY M L NGILFNHESPRRGPTFVTRKITRAVARI +G QKT+YLGNLDAKRDWGHARDY++GMW+M+Q D P D+VL+TGE H V+EFVE++F++VG E+ W GE V E G+ K DPE+VLVK+DP+YFRPTEVELLLGD KAKK +GW PE+SF +LVK+M++ADIA V+ G+
Sbjct: 206 EAYDMFLVNGILFNHESPRRGPTFVTRKITRAVARIQKGLQKTLYLGNLDAKRDWGHARDYVRGMWMMLQHDTPDDFVLATGETHPVREFVEKAFRHVGMEVEWKGEKGSVHEVGYNKADPEHVLVKIDPQYFRPTEVELLLGDPAKAKKHIGWEPEVSFDDLVKEMVEADIALVEKGD 384
BLAST of mRNA_Ecto-sp13_S_contig12622.2170.1 vs. uniprot
Match: A0A8J2SRK3_9STRA (GDP-mannose 4,6-dehydratase n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SRK3_9STRA) HSP 1 Score: 268 bits (684), Expect = 5.170e-86 Identity = 126/175 (72.00%), Postives = 146/175 (83.43%), Query Frame = 1
Query: 10 QAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYLGNLDAKRDWGHARDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVEESFKYVGTEITWVGEG--VEEYGHAKGDPENVLVKVDPRYFRPTEVELLLGDCTKAKKELGWVPEISFTELVKDMMKADIAHV 528
+AYGMHLTNGILFNHESPRRGPTFVTRKITRAVARI +GK KT+YLGNLDAKRDWGHARDY++GMWLMVQRDEP DYVLSTGECHSVKEF E +F VG + W G V+E G DP VLVKVDP+YFRPTEV+LL+GDC+KAKK LGW P+++F L ++M+ AD+A +
Sbjct: 230 EAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARISQGKMKTLYLGNLDAKRDWGHARDYVEGMWLMVQRDEPDDYVLSTGECHSVKEFCEVAFARVGITVQWKGAAGSVDEIGVDATDPSRVLVKVDPKYFRPTEVDLLVGDCSKAKKLLGWAPKVTFKALAEEMVDADLAEL 404
BLAST of mRNA_Ecto-sp13_S_contig12622.2170.1 vs. uniprot
Match: K0T9K6_THAOC (GDP-mannose 4,6-dehydratase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T9K6_THAOC) HSP 1 Score: 256 bits (653), Expect = 1.470e-83 Identity = 125/175 (71.43%), Postives = 143/175 (81.71%), Query Frame = 1
Query: 10 QAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYLGNLDAKRDWGHARDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVEESFKYVGTEITWVGEG--VEEYGHAKGDPENVLVKVDPRYFRPTEVELLLGDCTKAKKELGWVPEISFTELVKDMMKADIAHV 528
+AYGMHLTNGILFNHESPRRG TFVTRKIT AVARI +G +KT+YLGN+DAKRDWGHARDY+KGMW+M+Q D P DYVL+TGE H+V+EFVE++F VGT I W GE V+E G D VLVK+DPRYFRPTEVELLLGD +KAKK LGW E+ F LVKDMMKAD+A V
Sbjct: 61 EAYGMHLTNGILFNHESPRRGATFVTRKITIAVARISQGLEKTLYLGNIDAKRDWGHARDYVKGMWMMLQHDVPDDYVLATGETHTVREFVEKAFAEVGTTIKWKGETGTVDEIGVDADDESRVLVKIDPRYFRPTEVELLLGDPSKAKKTLGWEAELGFEGLVKDMMKADLAMV 235
BLAST of mRNA_Ecto-sp13_S_contig12622.2170.1 vs. uniprot
Match: A0A835Z0Z6_9STRA (GDP-mannose 4,6-dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Z6_9STRA) HSP 1 Score: 258 bits (659), Expect = 7.040e-83 Identity = 121/178 (67.98%), Postives = 146/178 (82.02%), Query Frame = 1
Query: 10 QAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYLGNLDAKRDWGHARDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVEESFKYVGTEITWVGE--GVEEYGHAKGDPENVLVKVDPRYFRPTEVELLLGDCTKAKKELGWVPEISFTELVKDMMKADIAHVDAG 537
+AYGM L+NGILFNHESPRRGPTFVTRKITRAV RIHR +Q+ +YLGNL+++RDWGHARDY++GMW+M+Q+D P D+VL+TGE HSVKEFVE SF YVGT + W GE V+E+G D VLVKVDP YFRPTEV+LL+G KAK+ LGW P+I+F LV+DMMKAD+A VD G
Sbjct: 180 EAYGMFLSNGILFNHESPRRGPTFVTRKITRAVCRIHRQRQECLYLGNLESQRDWGHARDYVEGMWMMLQQDTPDDFVLATGEMHSVKEFVEASFAYVGTTVAWKGERGSVDEHGVDAADESRVLVKVDPSYFRPTEVDLLIGSPAKAKRVLGWSPKITFKALVEDMMKADLAEVDTG 357
BLAST of mRNA_Ecto-sp13_S_contig12622.2170.1 vs. uniprot
Match: F0YLN7_AURAN (GDP-mannose 4,6-dehydratase n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLN7_AURAN) HSP 1 Score: 256 bits (655), Expect = 3.390e-82 Identity = 120/177 (67.80%), Postives = 146/177 (82.49%), Query Frame = 1
Query: 10 QAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYLGNLDAKRDWGHARDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVEESFKYVGTEITWVGEG--VEEYGHAKGDPENVLVKVDPRYFRPTEVELLLGDCTKAKKELGWVPEISFTELVKDMMKADIAHVDA 534
+AYGMHLTNGILFNHESPRRGPTFVTRKITRAV RI +QKT+YLGNLDAKRDWGHARDY++GMWLMVQRD P DYVL+TGECHSV+EFVE SF++VG ++ W GE EE G D + LVKVDP+Y+RPTEV+LL+GD KA+++LGW P+I+F +L +M+ AD+A + A
Sbjct: 186 EAYGMHLTNGILFNHESPRRGPTFVTRKITRAVVRIKAQQQKTLYLGNLDAKRDWGHARDYVEGMWLMVQRDVPDDYVLATGECHSVREFVEVSFEHVGIKVKWTGEPGTAEEVGVDAADESHELVKVDPKYYRPTEVDLLVGDAAKARRDLGWKPKITFKKLATEMVDADMAELKA 362
BLAST of mRNA_Ecto-sp13_S_contig12622.2170.1 vs. uniprot
Match: A0A482T0S9_9ARCH (GDP-mannose 4,6-dehydratase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T0S9_9ARCH) HSP 1 Score: 252 bits (643), Expect = 6.950e-82 Identity = 119/181 (65.75%), Postives = 145/181 (80.11%), Query Frame = 1
Query: 10 QAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYLGNLDAKRDWGHARDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVEESFKYVGTEITWVGEG--VEEYGHAKGDPENVLVKVDPRYFRPTEVELLLGDCTKAKKELGWVPEISFTELVKDMMKADIAHVDAGNEH 546
+AYGMH TNGILFNHESPRRGPTFVTRKITRAVA+IHRG QKT+YLGNLDAKRDWGHA+DY++GMW M+Q ++ DYVL+T E HSV+EF+E++F ++GTEI W+GE V+E G D VLVKVDPRYFRPTEV++L+G+ KA K LGW P F +LVK+M+ ADIA +D H
Sbjct: 76 EAYGMHATNGILFNHESPRRGPTFVTRKITRAVAKIHRGLQKTLYLGNLDAKRDWGHAKDYVEGMWRMLQTEQGDDYVLATNETHSVREFIEKAFGHIGTEIKWIGERGTVDETGVDAKDESRVLVKVDPRYFRPTEVDILIGNPAKATKALGWKPTTLFGDLVKEMVDADIAALDNPGSH 256
BLAST of mRNA_Ecto-sp13_S_contig12622.2170.1 vs. uniprot
Match: A0A7S2XZ47_9STRA (GDP-mannose 4,6-dehydratase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ47_9STRA) HSP 1 Score: 252 bits (643), Expect = 2.480e-80 Identity = 114/178 (64.04%), Postives = 147/178 (82.58%), Query Frame = 1
Query: 10 QAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYLGNLDAKRDWGHARDYIKGMWLMVQRD-EPSDYVLSTGECHSVKEFVEESFKYVGTEITWVGEGVEEYGHAKGDPENVLVKVDPRYFRPTEVELLLGDCTKAKKELGWVPEISFTELVKDMMKADIAHVDAGN 540
+AY MH NGILFNHESPRRGPTFVTRK+TRAVARIH+G Q+ + LGNLD++RDWGHARDY++GMW+M+QRD E DYVL+TGECHSV+EFVE++F Y+G + W G GV+E G + + VLVK++PRYFRPTEV+LL+GD +KAK LGW P+++F LV++MM+ADI V+ G+
Sbjct: 193 EAYNMHCINGILFNHESPRRGPTFVTRKVTRAVARIHKGLQQDLQLGNLDSQRDWGHARDYVEGMWMMMQRDGEAEDYVLATGECHSVREFVEKAFHYIGITLGWRGSGVDEVGFDSANEDRVLVKINPRYFRPTEVDLLVGDASKAKNLLGWSPKVTFQALVEEMMQADIDKVEKGD 370
BLAST of mRNA_Ecto-sp13_S_contig12622.2170.1 vs. uniprot
Match: A0A7S2GBW7_9STRA (GDP-mannose 4,6-dehydratase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GBW7_9STRA) HSP 1 Score: 249 bits (635), Expect = 5.530e-79 Identity = 118/179 (65.92%), Postives = 144/179 (80.45%), Query Frame = 1
Query: 10 QAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYLGNLDAKRDWGHARDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVEESFKYVGTEITWVGE--GVEEYGHAKGDPENVLVKVDPRYFRPTEVELLLGDCTKAKKELGWVPEISFTELVKDMMKADIAHVDAGN 540
+AYGMHLTNGILFNHESPRRGPTFVTRKITRAV RI +G Q ++LGN+D++RDWGHARDY+KGMWLMVQRDEP D+VL+T ECHSV+EFVE++F+ V +I W GE V+E G D LVK+D +YFRPTEV+LL+GD KAKK LGW PEI+F LV +MM+ D+ V+AG+
Sbjct: 203 EAYGMHLTNGILFNHESPRRGPTFVTRKITRAVCRISKGLQDILFLGNIDSQRDWGHARDYVKGMWLMVQRDEPEDFVLATNECHSVREFVEKAFEAVDMKIKWTGEKGSVDEVGVDASDESRALVKIDLQYFRPTEVDLLIGDPAKAKKLLGWEPEITFDGLVTEMMEEDMKLVEAGD 381
BLAST of mRNA_Ecto-sp13_S_contig12622.2170.1 vs. uniprot
Match: A0A0L0DC07_THETB (GDP-mannose 4,6-dehydratase n=2 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DC07_THETB) HSP 1 Score: 248 bits (632), Expect = 1.280e-78 Identity = 115/180 (63.89%), Postives = 146/180 (81.11%), Query Frame = 1
Query: 10 QAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYLGNLDAKRDWGHARDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVEESFKYVGTEITWVGEGVEEYGHAK--GDPENVLVKVDPRYFRPTEVELLLGDCTKAKKELGWVPEISFTELVKDMMKADIAHVDAGNE 543
+AY M NGILFNHESPRRG TFVTRKITRAVA+I GKQK +YLGNLDAKRDWGHARDY++GMW+M+Q +EP D+VL+TGE H+V+ F + +FK +G E+TW GEG+EE G + G+P +VKVDP YFRPTEV+LLLGD TKA+ +LGWVPE++F LV+DM+ AD+ + AG++
Sbjct: 196 EAYNMFACNGILFNHESPRRGATFVTRKITRAVAKIAAGKQKVVYLGNLDAKRDWGHARDYVRGMWMMMQAEEPEDFVLATGETHTVRSFCDAAFKVIGVELTWQGEGIEEVGISSVTGEP---VVKVDPAYFRPTEVDLLLGDPTKARTKLGWVPEVTFDALVRDMVVADLEEIGAGDK 372 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12622.2170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12622.2170.1 >prot_Ecto-sp13_S_contig12622.2170.1 ID=prot_Ecto-sp13_S_contig12622.2170.1|Name=mRNA_Ecto-sp13_S_contig12622.2170.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=184bp MGHQAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYLGback to top mRNA from alignment at Ecto-sp13_S_contig12622:2793..4645- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12622.2170.1 ID=mRNA_Ecto-sp13_S_contig12622.2170.1|Name=mRNA_Ecto-sp13_S_contig12622.2170.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1853bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12622:2793..4645- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12622:2793..4645- >mRNA_Ecto-sp13_S_contig12622.2170.1 ID=mRNA_Ecto-sp13_S_contig12622.2170.1|Name=mRNA_Ecto-sp13_S_contig12622.2170.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=552bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12622:2793..4645- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |