mRNA_Ecto-sp13_S_contig1262.2169.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1262.2169.1
Unique NamemRNA_Ecto-sp13_S_contig1262.2169.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1262.2169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1262contigEcto-sp13_S_contig1262:16505..18120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1616
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-12_002310.1
Cds size252
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462673.7545218-UTR-Ecto-sp13_S_contig1262:16504..172321681462673.7545218-UTR-Ecto-sp13_S_contig1262:16504..17232Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1262 16505..17232 +
1681462673.7744799-UTR-Ecto-sp13_S_contig1262:17484..181201681462673.7744799-UTR-Ecto-sp13_S_contig1262:17484..18120Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1262 17485..18120 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462673.7650714-CDS-Ecto-sp13_S_contig1262:17232..174841681462673.7650714-CDS-Ecto-sp13_S_contig1262:17232..17484Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1262 17233..17484 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1262.2169.1prot_Ecto-sp13_S_contig1262.2169.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1262 17233..17484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1262.2169.1

>prot_Ecto-sp13_S_contig1262.2169.1 ID=prot_Ecto-sp13_S_contig1262.2169.1|Name=mRNA_Ecto-sp13_S_contig1262.2169.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
MEQFMPRRDTSDEAVEGVDFPVKSHEKTFRYIAAAAYELMMCFASAHLSE
DGWTSNFSLMGDVSLRVKCTRTIFLFDMSHRLA*
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mRNA from alignment at Ecto-sp13_S_contig1262:16505..18120+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1262.2169.1 ID=mRNA_Ecto-sp13_S_contig1262.2169.1|Name=mRNA_Ecto-sp13_S_contig1262.2169.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1616bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1262:16505..18120+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAAGGAAGATTGACACATGTAGAGTAATATTTTTCTTGGCCGATCGTCTC
GTAGCTGAGCGTGTGATGCCAGGACCCCCAGTGTTGCCACGTTGTGGTGC
CCATCGTGTGACGTGCGACCCGTTATTTGTCTAGAAGCAGAGTAGACCCC
TTGGTGGTTGTTCAGAGGCGAGCTTCCCATCCCGTAAAGGCCTCATGTTT
GTAGGGTTCGTTTTACGGGGTTCGTTTGCGGACGAGCGCCAGCATGTCGA
CGCGGCGTGCGATTTCCCCCCCCTTAAATTATTTTCGTGAGAACAGCCCC
CTTCGCAGTTGTGTATTTCTAGTGCGCATTAGAGTTTGCTTGGGCGAGGG
GTAGAGGGTGCTTTCGTTGAATCCCTTCGCTTCTCCAGGCGTTGGGTGGT
TATTTGTGTAGTTGCCAGGGGCGATAACGCGCGCCCATGCCACGATCGTC
TCACGTGTAAGTACTCATTTTATTGTTTTGTGGCTAGTAGGGGCATCGCG
AATCGAGCGTTTTGAGGTGACACTTTTTTAGTATGTTTCCCGAACACACA
AAAAAGAAAACAGTGTCGTCGGTTGATCATAGAACCGGATTGCCGGAGGT
GGAGAGCTGCAGTCCGCGAGCCCTCGTCCAGTTTGTTCATTGTCTGGTGC
TGGGATACGATTTTTGGTTGTAGTGAACGTGCTTGCTTGCGTCAACGCCA
ATAACAGGCCGTTGTTGTCAAGAGGACAATGGAGCAATTTATGCCGAGAA
GGGATACGTCCGATGAAGCTGTTGAAGGGGTCGATTTTCCTGTTAAGAGT
CACGAGAAAACGTTTAGATACATAGCTGCCGCGGCTTATGAGCTGATGAT
GTGTTTCGCCTCGGCTCACTTGAGTGAAGATGGTTGGACGTCTAACTTTT
CGCTGATGGGTGATGTATCGTTGCGCGTAAAATGCACGAGGACGATTTTT
TTGTTTGACATGTCTCATCGTTTGGCGTGAACCAGGAGGGTGGCTCTCGG
CCCGATGGTTTTTGTGTTAGTTTGCGACAGGGGTGATCGGGTTGACAACG
ACCCCGCAGGCAGCATTGAAGTGCTTGCGCACAACACACAAGGACGCCCG
CGGCTATGATATCGTCGTGTTGCTTTGAAGCAAGCATTGCGCGATGCGTA
TTCTCACTGCGTGCATGTGGCGCTGTTATGGTTCTAAATTGCTTTTATTT
ATTAACGGAGTGAATGTTATGCCGACTCGGGAGAGGATTACCCACGCATC
GATACGTGCGTGTGGTCTTGGGGGATGTTTATTTTTTGTCTTCACTTCAA
ATCAGCGCTCACAGCATCCCTTGTGCCGTTTTCTCCCATCCCGTGGCCAC
ATAGAAGTGTTCCCCCCTGTGAGCCCCCCTACTCAACCCTCTTGCGGTTC
TTTGCCTTCGATCTTTTTTGCGCGAAGAGGACAGTACTCTCTTCCCTGTG
TACACACGAACTACAGAGTAGGGCTTTACACCCAGGCCAGGGAGCGGAAG
CGAGAGAAAACTCACTTCGTAAGAAATAGCTCGCTTGCGCCGGGATTCGA
ACCCCTGGCCCCGGCCACTATTGTAAAGCTTGTACCGGGAGGGATGTGAT
AGTACGAACATTATCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1262:16505..18120+

>mRNA_Ecto-sp13_S_contig1262.2169.1 ID=mRNA_Ecto-sp13_S_contig1262.2169.1|Name=mRNA_Ecto-sp13_S_contig1262.2169.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1262:16505..18120+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCAATTTATGCCGAGAAGGGATACGTCCGATGAAGCTGTTGAAGG
GGTCGATTTTCCTGTTAAGAGTCACGAGAAAACGTTTAGATACATAGCTG
CCGCGGCTTATGAGCTGATGATGTGTTTCGCCTCGGCTCACTTGAGTGAA
GATGGTTGGACGTCTAACTTTTCGCTGATGGGTGATGTATCGTTGCGCGT
AAAATGCACGAGGACGATTTTTTTGTTTGACATGTCTCATCGTTTGGCGT
GA
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